HEADER TRANSCRIPTION 26-SEP-07 2JVV TITLE SOLUTION STRUCTURE OF E. COLI NUSG CARBOXYTERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ANTITERMINATION PROTEIN NUSG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: NUSG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 11A KEYWDS NUSG, TRANSCRIPTION FACTOR, TRANSCRIPTION ANTITERMINATION, KEYWDS 2 TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SCHWEIMER,U.SCHECKENHOFER,P.ROESCH REVDAT 4 13-AUG-14 2JVV 1 JRNL REVDAT 3 30-JAN-13 2JVV 1 REMARK VERSN REVDAT 2 24-FEB-09 2JVV 1 VERSN REVDAT 1 14-OCT-08 2JVV 0 JRNL AUTH R.A.MOONEY,K.SCHWEIMER,P.ROSCH,M.GOTTESMAN,R.LANDICK JRNL TITL TWO STRUCTURALLY INDEPENDENT DOMAINS OF E. COLI NUSG CREATE JRNL TITL 2 REGULATORY PLASTICITY VIA DISTINCT INTERACTIONS WITH RNA JRNL TITL 3 POLYMERASE AND REGULATORS. JRNL REF J.MOL.BIOL. V. 391 341 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19500594 JRNL DOI 10.1016/J.JMB.2009.05.078 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 1.2.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JVV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-07. REMARK 100 THE RCSB ID CODE IS RCSB100355. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.45 MM [U-95% 13C; U-95% 15N] REMARK 210 NUSG, 10 MM POTASSIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D HCCH REMARK 210 -TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, X-PLOR_NIH 1.2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE PROTEIN SHOWS AGGREGATION VIA THE AMINOTERMINAL REMARK 210 DOMAIN, AND THE RESULTING LINE BROADING OF THE SIGNALS OF THE REMARK 210 AMINOTERMINAL DOMAIN DID NOT ALLOW A STRUCTURE DETERMINATION OF REMARK 210 THE AMINOTERMINAL DOMAIN USING THE FULL LENGTH PROTEIN. BECUASE REMARK 210 OF FLEXIBLE LINKED DOMAINS THE CARBOXYTERMINAL DOMAIN SHOWED REMARK 210 SUFFICIENT SIGNALS TO DETERMINE THE STRUCTURE OF THIS DOMAIN REMARK 210 USING THE FULL LENGTH PROTEIN. ONLY THE CARBOXYTERMINAL DOMAIN REMARK 210 (RES. 124-181) GAVE INTERPRETABLE NMR DATA FOR ASSIGNMENT AND REMARK 210 STRUCTURE DETERMINATION. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 ARG A 8 REMARK 465 TRP A 9 REMARK 465 TYR A 10 REMARK 465 VAL A 11 REMARK 465 VAL A 12 REMARK 465 GLN A 13 REMARK 465 ALA A 14 REMARK 465 PHE A 15 REMARK 465 SER A 16 REMARK 465 GLY A 17 REMARK 465 PHE A 18 REMARK 465 GLU A 19 REMARK 465 GLY A 20 REMARK 465 ARG A 21 REMARK 465 VAL A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 SER A 25 REMARK 465 LEU A 26 REMARK 465 ARG A 27 REMARK 465 GLU A 28 REMARK 465 HIS A 29 REMARK 465 ILE A 30 REMARK 465 LYS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ASN A 34 REMARK 465 MET A 35 REMARK 465 GLU A 36 REMARK 465 ASP A 37 REMARK 465 LEU A 38 REMARK 465 PHE A 39 REMARK 465 GLY A 40 REMARK 465 GLU A 41 REMARK 465 VAL A 42 REMARK 465 MET A 43 REMARK 465 VAL A 44 REMARK 465 PRO A 45 REMARK 465 THR A 46 REMARK 465 GLU A 47 REMARK 465 GLU A 48 REMARK 465 VAL A 49 REMARK 465 VAL A 50 REMARK 465 GLU A 51 REMARK 465 ILE A 52 REMARK 465 ARG A 53 REMARK 465 GLY A 54 REMARK 465 GLY A 55 REMARK 465 GLN A 56 REMARK 465 ARG A 57 REMARK 465 ARG A 58 REMARK 465 LYS A 59 REMARK 465 SER A 60 REMARK 465 GLU A 61 REMARK 465 ARG A 62 REMARK 465 LYS A 63 REMARK 465 PHE A 64 REMARK 465 PHE A 65 REMARK 465 PRO A 66 REMARK 465 GLY A 67 REMARK 465 TYR A 68 REMARK 465 VAL A 69 REMARK 465 LEU A 70 REMARK 465 VAL A 71 REMARK 465 GLN A 72 REMARK 465 MET A 73 REMARK 465 VAL A 74 REMARK 465 MET A 75 REMARK 465 ASN A 76 REMARK 465 ASP A 77 REMARK 465 ALA A 78 REMARK 465 SER A 79 REMARK 465 TRP A 80 REMARK 465 HIS A 81 REMARK 465 LEU A 82 REMARK 465 VAL A 83 REMARK 465 ARG A 84 REMARK 465 SER A 85 REMARK 465 VAL A 86 REMARK 465 PRO A 87 REMARK 465 ARG A 88 REMARK 465 VAL A 89 REMARK 465 MET A 90 REMARK 465 GLY A 91 REMARK 465 PHE A 92 REMARK 465 ILE A 93 REMARK 465 GLY A 94 REMARK 465 GLY A 95 REMARK 465 THR A 96 REMARK 465 SER A 97 REMARK 465 ASP A 98 REMARK 465 ARG A 99 REMARK 465 PRO A 100 REMARK 465 ALA A 101 REMARK 465 PRO A 102 REMARK 465 ILE A 103 REMARK 465 SER A 104 REMARK 465 ASP A 105 REMARK 465 LYS A 106 REMARK 465 GLU A 107 REMARK 465 VAL A 108 REMARK 465 ASP A 109 REMARK 465 ALA A 110 REMARK 465 ILE A 111 REMARK 465 MET A 112 REMARK 465 ASN A 113 REMARK 465 ARG A 114 REMARK 465 LEU A 115 REMARK 465 GLN A 116 REMARK 465 GLN A 117 REMARK 465 VAL A 118 REMARK 465 GLY A 119 REMARK 465 ASP A 120 REMARK 465 LYS A 121 REMARK 465 PRO A 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 170 106.45 -47.95 REMARK 500 2 PRO A 170 103.66 -53.91 REMARK 500 3 PRO A 130 128.90 -39.00 REMARK 500 4 PRO A 170 105.98 -49.09 REMARK 500 5 PRO A 170 100.28 -54.17 REMARK 500 7 PRO A 170 107.80 -53.13 REMARK 500 8 ARG A 167 154.22 165.13 REMARK 500 9 PRO A 170 105.20 -54.24 REMARK 500 10 PRO A 130 131.36 -35.28 REMARK 500 10 ARG A 167 167.14 161.26 REMARK 500 11 PRO A 170 108.42 -52.10 REMARK 500 12 ASP A 143 43.83 71.05 REMARK 500 12 PRO A 170 108.15 -46.88 REMARK 500 13 ARG A 167 148.49 161.78 REMARK 500 14 PRO A 170 104.20 -56.69 REMARK 500 15 PRO A 130 124.11 -35.62 REMARK 500 15 PRO A 170 106.64 -45.55 REMARK 500 16 PRO A 130 133.99 -39.68 REMARK 500 16 PHE A 165 -126.20 48.46 REMARK 500 17 THR A 126 23.30 48.17 REMARK 500 17 PRO A 170 109.90 -49.08 REMARK 500 18 PRO A 170 104.64 -57.60 REMARK 500 19 ARG A 167 146.86 160.48 REMARK 500 20 PRO A 170 106.51 -55.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 123 0.32 SIDE CHAIN REMARK 500 1 ARG A 135 0.21 SIDE CHAIN REMARK 500 1 ARG A 157 0.14 SIDE CHAIN REMARK 500 1 ARG A 167 0.32 SIDE CHAIN REMARK 500 2 ARG A 123 0.30 SIDE CHAIN REMARK 500 2 ARG A 135 0.28 SIDE CHAIN REMARK 500 2 ARG A 157 0.30 SIDE CHAIN REMARK 500 2 ARG A 167 0.29 SIDE CHAIN REMARK 500 3 ARG A 123 0.29 SIDE CHAIN REMARK 500 3 ARG A 135 0.31 SIDE CHAIN REMARK 500 3 ARG A 157 0.20 SIDE CHAIN REMARK 500 3 ARG A 167 0.28 SIDE CHAIN REMARK 500 4 ARG A 123 0.27 SIDE CHAIN REMARK 500 4 ARG A 135 0.20 SIDE CHAIN REMARK 500 4 ARG A 157 0.26 SIDE CHAIN REMARK 500 4 ARG A 167 0.10 SIDE CHAIN REMARK 500 5 ARG A 123 0.25 SIDE CHAIN REMARK 500 5 ARG A 135 0.28 SIDE CHAIN REMARK 500 5 ARG A 157 0.18 SIDE CHAIN REMARK 500 5 ARG A 167 0.24 SIDE CHAIN REMARK 500 6 ARG A 123 0.28 SIDE CHAIN REMARK 500 6 ARG A 135 0.14 SIDE CHAIN REMARK 500 6 ARG A 157 0.30 SIDE CHAIN REMARK 500 7 ARG A 123 0.31 SIDE CHAIN REMARK 500 7 ARG A 135 0.27 SIDE CHAIN REMARK 500 7 ARG A 157 0.26 SIDE CHAIN REMARK 500 7 ARG A 167 0.26 SIDE CHAIN REMARK 500 8 ARG A 123 0.32 SIDE CHAIN REMARK 500 8 ARG A 157 0.32 SIDE CHAIN REMARK 500 8 ARG A 167 0.18 SIDE CHAIN REMARK 500 9 ARG A 123 0.09 SIDE CHAIN REMARK 500 9 ARG A 135 0.24 SIDE CHAIN REMARK 500 9 ARG A 157 0.30 SIDE CHAIN REMARK 500 9 ARG A 167 0.08 SIDE CHAIN REMARK 500 10 ARG A 123 0.21 SIDE CHAIN REMARK 500 10 ARG A 135 0.32 SIDE CHAIN REMARK 500 10 ARG A 157 0.15 SIDE CHAIN REMARK 500 10 ARG A 167 0.17 SIDE CHAIN REMARK 500 11 ARG A 123 0.26 SIDE CHAIN REMARK 500 11 ARG A 135 0.28 SIDE CHAIN REMARK 500 11 ARG A 157 0.27 SIDE CHAIN REMARK 500 11 ARG A 167 0.32 SIDE CHAIN REMARK 500 12 ARG A 123 0.31 SIDE CHAIN REMARK 500 12 ARG A 135 0.32 SIDE CHAIN REMARK 500 12 ARG A 157 0.28 SIDE CHAIN REMARK 500 12 ARG A 167 0.32 SIDE CHAIN REMARK 500 13 ARG A 135 0.08 SIDE CHAIN REMARK 500 13 ARG A 157 0.30 SIDE CHAIN REMARK 500 13 ARG A 167 0.32 SIDE CHAIN REMARK 500 14 ARG A 123 0.14 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 76 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JVV A 1 181 UNP P0AFG0 NUSG_ECOLI 1 181 SEQRES 1 A 181 MET SER GLU ALA PRO LYS LYS ARG TRP TYR VAL VAL GLN SEQRES 2 A 181 ALA PHE SER GLY PHE GLU GLY ARG VAL ALA THR SER LEU SEQRES 3 A 181 ARG GLU HIS ILE LYS LEU HIS ASN MET GLU ASP LEU PHE SEQRES 4 A 181 GLY GLU VAL MET VAL PRO THR GLU GLU VAL VAL GLU ILE SEQRES 5 A 181 ARG GLY GLY GLN ARG ARG LYS SER GLU ARG LYS PHE PHE SEQRES 6 A 181 PRO GLY TYR VAL LEU VAL GLN MET VAL MET ASN ASP ALA SEQRES 7 A 181 SER TRP HIS LEU VAL ARG SER VAL PRO ARG VAL MET GLY SEQRES 8 A 181 PHE ILE GLY GLY THR SER ASP ARG PRO ALA PRO ILE SER SEQRES 9 A 181 ASP LYS GLU VAL ASP ALA ILE MET ASN ARG LEU GLN GLN SEQRES 10 A 181 VAL GLY ASP LYS PRO ARG PRO LYS THR LEU PHE GLU PRO SEQRES 11 A 181 GLY GLU MET VAL ARG VAL ASN ASP GLY PRO PHE ALA ASP SEQRES 12 A 181 PHE ASN GLY VAL VAL GLU GLU VAL ASP TYR GLU LYS SER SEQRES 13 A 181 ARG LEU LYS VAL SER VAL SER ILE PHE GLY ARG ALA THR SEQRES 14 A 181 PRO VAL GLU LEU ASP PHE SER GLN VAL GLU LYS ALA SHEET 1 A 5 ARG A 167 LEU A 173 0 SHEET 2 A 5 ARG A 157 ILE A 164 -1 N VAL A 160 O VAL A 171 SHEET 3 A 5 PHE A 144 ASP A 152 -1 N GLU A 150 O LYS A 159 SHEET 4 A 5 GLU A 132 VAL A 136 -1 N VAL A 134 O GLY A 146 SHEET 5 A 5 VAL A 178 LYS A 180 -1 O GLU A 179 N ARG A 135 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1