HEADER MEMBRANE PROTEIN, IMMUNE SYSTEM 12-OCT-07 2JWG TITLE STRUCTURE OF A GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED DOMAIN FROM A TITLE 2 TRYPANOSOME VARIANT SURFACE GLYCOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VARIANT SURFACE GLYCOPROTEIN ILTAT 1.24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 405-450; COMPND 5 SYNONYM: VSG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 STRAIN: BRUCEI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 TRXB; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MEMBRANE PROTEIN, IMMUNE SYSTEM, VSG TYPE 1 C-TERMINAL DOMAIN EXPDTA SOLUTION NMR NUMMDL 35 AUTHOR N.G.JONES,D.NIETLISPACH,R.SHARMA,D.F.BURKE,I.EYRES,M.MUES,H.R.MOTT, AUTHOR 2 M.CARRINGTON REVDAT 4 13-JUL-11 2JWG 1 VERSN REVDAT 3 24-FEB-09 2JWG 1 VERSN REVDAT 2 26-FEB-08 2JWG 1 JRNL REVDAT 1 13-NOV-07 2JWG 0 JRNL AUTH N.G.JONES,D.NIETLISPACH,R.SHARMA,D.F.BURKE,I.EYRES,M.MUES, JRNL AUTH 2 H.R.MOTT,M.CARRINGTON JRNL TITL STRUCTURE OF A GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED DOMAIN JRNL TITL 2 FROM A TRYPANOSOME VARIANT SURFACE GLYCOPROTEIN JRNL REF J.BIOL.CHEM. V. 283 3584 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18003615 JRNL DOI 10.1074/JBC.M706207200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 786 UNAMBIGUOUS AND 192 AMBIGUOUS REMARK 3 DISTANCE RESTRAINTS REMARK 4 REMARK 4 2JWG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-07. REMARK 100 THE RCSB ID CODE IS RCSB100376. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM ILTAT1.24 C1-DOMAIN, 50 REMARK 210 MM SODIUM PHOSPHATE, 150 MM REMARK 210 SODIUM CHLORIDE, 0.05 % SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA, ANSIG, ARIA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 35 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA GLU A 386 HB2 PHE A 419 1.45 REMARK 500 HB3 HIS A 407 HA ASN A 416 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 383 -135.84 -100.52 REMARK 500 1 SER A 421 -132.94 64.16 REMARK 500 1 THR A 422 30.83 -85.57 REMARK 500 2 LYS A 383 -120.36 61.28 REMARK 500 2 LYS A 408 -70.34 -54.70 REMARK 500 2 ALA A 412 109.46 -57.63 REMARK 500 2 GLU A 414 -166.99 -78.80 REMARK 500 2 SER A 421 115.75 67.20 REMARK 500 2 LYS A 423 -56.07 -156.37 REMARK 500 2 ALA A 424 146.07 64.75 REMARK 500 3 THR A 393 31.93 -144.72 REMARK 500 3 GLU A 414 -169.29 -73.74 REMARK 500 3 SER A 421 -129.38 48.59 REMARK 500 3 LYS A 423 -55.55 -177.31 REMARK 500 4 ALA A 412 107.06 -54.94 REMARK 500 4 SER A 421 73.32 60.83 REMARK 500 4 ALA A 424 -141.95 -97.07 REMARK 500 4 SER A 425 -137.94 -172.00 REMARK 500 4 LYS A 426 -51.27 -164.22 REMARK 500 5 LYS A 402 -82.54 -69.32 REMARK 500 5 GLU A 414 -144.97 -77.31 REMARK 500 6 SER A 384 70.36 -158.80 REMARK 500 6 LYS A 411 48.47 -151.67 REMARK 500 6 ALA A 412 37.15 -171.19 REMARK 500 6 SER A 421 -56.53 72.82 REMARK 500 6 LYS A 423 -32.05 175.56 REMARK 500 6 LYS A 426 -71.63 -93.54 REMARK 500 7 ILE A 403 38.29 -83.86 REMARK 500 7 HIS A 407 71.88 -158.87 REMARK 500 7 GLU A 414 -149.82 -80.35 REMARK 500 7 SER A 421 114.61 68.69 REMARK 500 7 LYS A 423 33.63 -153.29 REMARK 500 7 SER A 425 42.46 -109.06 REMARK 500 8 SER A 384 65.47 -168.19 REMARK 500 8 GLU A 401 41.51 -75.79 REMARK 500 8 LYS A 402 -96.20 54.71 REMARK 500 8 GLU A 414 -167.83 -77.02 REMARK 500 8 SER A 421 89.80 66.09 REMARK 500 8 THR A 422 19.51 53.52 REMARK 500 8 LYS A 426 -129.11 58.10 REMARK 500 9 LYS A 408 -70.11 -65.43 REMARK 500 9 ALA A 412 84.19 -61.28 REMARK 500 9 GLU A 414 -147.23 -72.04 REMARK 500 9 SER A 421 -122.75 47.67 REMARK 500 9 THR A 422 32.23 -98.26 REMARK 500 10 GLU A 414 -157.06 -78.90 REMARK 500 10 SER A 421 97.50 64.97 REMARK 500 11 ALA A 412 100.97 -57.94 REMARK 500 11 ASN A 416 -76.66 -93.21 REMARK 500 11 SER A 421 -50.74 72.85 REMARK 500 REMARK 500 THIS ENTRY HAS 189 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XU6 RELATED DB: PDB REMARK 900 STRUCTURE OF THE C-TERMINAL DOMAIN FROM TRYPANOSOMA BRUCEI REMARK 900 VARIANT SURFACE GLYCOPROTEIN MITAT1.2 REMARK 900 RELATED ID: 2JWH RELATED DB: PDB DBREF 2JWG A 382 427 UNP P26329 VSI4_TRYBB 405 450 SEQRES 1 A 46 GLY LYS SER PRO GLU ALA GLU CYS ASN LYS ILE THR GLU SEQRES 2 A 46 GLU PRO LYS CYS SER GLU GLU LYS ILE CYS SER TRP HIS SEQRES 3 A 46 LYS GLU VAL LYS ALA GLY GLU LYS ASN CYS GLN PHE ASN SEQRES 4 A 46 SER THR LYS ALA SER LYS SER HELIX 1 1 SER A 384 LYS A 391 1 8 HELIX 2 2 GLU A 394 GLU A 401 1 8 HELIX 3 3 SER A 421 ALA A 424 5 4 SHEET 1 A 2 CYS A 404 TRP A 406 0 SHEET 2 A 2 CYS A 417 PHE A 419 -1 O GLN A 418 N SER A 405 SSBOND 1 CYS A 389 CYS A 404 1555 1555 2.03 SSBOND 2 CYS A 398 CYS A 417 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1