data_2JWV # _entry.id 2JWV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.323 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JWV RCSB RCSB100391 WWPDB D_1000100391 BMRB 15538 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type 1OOA PDB 'Crystal structure of NF-kB (p50)2 bound to RNA' unspecified 15538 BMRB . unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JWV _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-10-25 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Reiter, N.J.' 1 'Maher III, L.' 2 'Butcher, S.E.' 3 # _citation.id primary _citation.title 'DNA mimicry by a high-affinity anti-NF-kappaB RNA aptamer' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 36 _citation.page_first 1227 _citation.page_last 1236 _citation.year 2008 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18160411 _citation.pdbx_database_id_DOI 10.1093/nar/gkm1141 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Reiter, N.J.' 1 ? primary 'Maher, L.J.' 2 ? primary 'Butcher, S.E.' 3 ? # _cell.entry_id 2JWV _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JWV _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (29-MER)' _entity.formula_weight 9326.556 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GAUACUUGAAACUGUAAGGUUGGCGUAUC _entity_poly.pdbx_seq_one_letter_code_can GAUACUUGAAACUGUAAGGUUGGCGUAUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 U n 1 4 A n 1 5 C n 1 6 U n 1 7 U n 1 8 G n 1 9 A n 1 10 A n 1 11 A n 1 12 C n 1 13 U n 1 14 G n 1 15 U n 1 16 A n 1 17 A n 1 18 G n 1 19 G n 1 20 U n 1 21 U n 1 22 G n 1 23 G n 1 24 C n 1 25 G n 1 26 U n 1 27 A n 1 28 U n 1 29 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA was prepared by in vitro transcription with T7 RNA polymerase' # _struct_ref.id 1 _struct_ref.db_code 2JWV _struct_ref.db_name PDB _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession 2JWV _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GAUACUUGAAACUGUAAGGUUGGCGUAUC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JWV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 29 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2JWV _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 29 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 29 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H NOESY' 1 3 2 '2D 1H-1H TOCSY' 1 4 1 '2D 1H-13C HSQC' 1 5 1 '3D 1H-13C NOESY' 1 6 1 '3D HCCH-TOCSY' 1 7 1 '2D 1H-1H COSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.05 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM [U-99% 13C; U-99% 15N] RNA, 1 mM RNA, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1 mM RNA, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Varian INOVA 1 'Varian INOVA' 750 Bruker DMX 2 'Bruker DMX' # _pdbx_nmr_refine.entry_id 2JWV _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'CNS 1.1-simulated annealing followed by a XPLOR-NIH refinement protocol' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JWV _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JWV _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.1 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Solution structure of a high affinity 29nt. anti-NFkB RNA aptamer' _exptl.entry_id 2JWV _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JWV _struct.title 'Structure of a high affinity anti-NFkB RNA aptamer' _struct.pdbx_descriptor 29-MER _struct.pdbx_model_details 'Solution structure of a high affinity 29nt. anti-NFkB RNA aptamer' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JWV _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, asymmetric internal bulge, stem loop' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 1 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 1 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 1 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 2 A U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 2 A U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 27 N1 ? ? A U 3 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 27 N6 ? ? A U 3 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 26 N3 ? ? A A 4 A U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 26 O4 ? ? A A 4 A U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 5 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 5 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 5 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A U 6 O4 ? ? ? 1_555 A G 25 N1 ? ? A U 6 A G 25 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog14 hydrog ? ? A U 7 N3 ? ? ? 1_555 A C 24 N3 ? ? A U 7 A C 24 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? hydrog15 hydrog ? ? A U 7 O4 ? ? ? 1_555 A C 24 N4 ? ? A U 7 A C 24 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? hydrog16 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 22 N3 ? ? A A 9 A G 22 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog17 hydrog ? ? A A 9 N7 ? ? ? 1_555 A G 22 N2 ? ? A A 9 A G 22 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog18 hydrog ? ? A A 9 N7 ? ? ? 1_555 A G 23 N2 ? ? A A 9 A G 23 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 21 N3 ? ? A A 10 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 21 O4 ? ? A A 10 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 11 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 11 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A U 13 O2 ? ? ? 1_555 A G 18 N1 ? ? A U 13 A G 18 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog27 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 17 N7 ? ? A G 14 A A 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog28 hydrog ? ? A G 14 N3 ? ? ? 1_555 A A 17 N6 ? ? A G 14 A A 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2JWV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 U 3 3 3 U U A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 G 14 14 14 G G A . n A 1 15 U 15 15 15 U U A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 C 24 24 24 C C A . n A 1 25 G 25 25 25 G G A . n A 1 26 U 26 26 26 U U A . n A 1 27 A 27 27 27 A A A . n A 1 28 U 28 28 28 U U A . n A 1 29 C 29 29 29 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id RNA 1 mM '[U-99% 13C; U-99% 15N]' 1 RNA 1 mM ? 2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O2'" A G 14 ? ? H62 A A 16 ? ? 1.56 2 2 "O2'" A G 14 ? ? H62 A A 16 ? ? 1.58 3 3 "O2'" A G 14 ? ? H62 A A 16 ? ? 1.55 4 4 "O2'" A G 14 ? ? H62 A A 16 ? ? 1.57 5 5 "O2'" A G 14 ? ? H62 A A 16 ? ? 1.55 6 5 "HO2'" A G 14 ? ? N7 A A 16 ? ? 1.56 7 5 "O2'" A U 6 ? ? H6 A U 7 ? ? 1.59 8 6 "O2'" A G 14 ? ? H62 A A 16 ? ? 1.54 9 6 "O2'" A U 7 ? ? H8 A G 8 ? ? 1.57 10 7 "O2'" A G 14 ? ? H62 A A 16 ? ? 1.56 11 8 "O2'" A G 14 ? ? H62 A A 16 ? ? 1.58 12 9 "O2'" A G 14 ? ? H62 A A 16 ? ? 1.58 13 10 "O2'" A G 14 ? ? H62 A A 16 ? ? 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A A 9 ? ? "O4'" A A 9 ? ? "C4'" A A 9 ? ? 105.45 109.70 -4.25 0.70 N 2 2 "C1'" A A 9 ? ? "O4'" A A 9 ? ? "C4'" A A 9 ? ? 104.78 109.70 -4.92 0.70 N 3 4 "C1'" A A 9 ? ? "O4'" A A 9 ? ? "C4'" A A 9 ? ? 104.84 109.70 -4.86 0.70 N 4 5 "C1'" A A 9 ? ? "O4'" A A 9 ? ? "C4'" A A 9 ? ? 104.40 109.70 -5.30 0.70 N 5 6 "C1'" A A 9 ? ? "O4'" A A 9 ? ? "C4'" A A 9 ? ? 105.38 109.70 -4.32 0.70 N 6 7 "C1'" A A 9 ? ? "O4'" A A 9 ? ? "C4'" A A 9 ? ? 105.30 109.70 -4.40 0.70 N 7 8 "C1'" A A 9 ? ? "O4'" A A 9 ? ? "C4'" A A 9 ? ? 105.01 109.70 -4.69 0.70 N 8 9 "C1'" A A 9 ? ? "O4'" A A 9 ? ? "C4'" A A 9 ? ? 104.68 109.70 -5.02 0.70 N 9 10 "C1'" A A 9 ? ? "O4'" A A 9 ? ? "C4'" A A 9 ? ? 104.65 109.70 -5.05 0.70 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2JWV 'double helix' 2JWV 'a-form double helix' 2JWV tetraloop 2JWV 'bulge loop' 2JWV 'mismatched base pair' 2JWV 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 2 1_555 A U 28 1_555 -0.285 -0.104 0.298 -0.033 -6.997 -2.419 1 A_A2:U28_A A 2 ? A 28 ? 20 1 1 A U 3 1_555 A A 27 1_555 0.102 -0.113 -0.006 -0.049 -12.788 -3.220 2 A_U3:A27_A A 3 ? A 27 ? 20 1 1 A A 4 1_555 A U 26 1_555 -0.100 -0.132 0.093 0.353 -15.434 -5.296 3 A_A4:U26_A A 4 ? A 26 ? 20 1 1 A C 5 1_555 A G 25 1_555 0.250 -0.131 0.064 1.612 -8.355 -2.170 4 A_C5:G25_A A 5 ? A 25 ? 19 1 1 A U 7 1_555 A C 24 1_555 -0.031 -2.839 1.962 11.455 0.485 15.009 5 A_U7:C24_A A 7 ? A 24 ? 18 1 1 A A 9 1_555 A G 22 1_555 -6.281 -3.686 -1.742 2.076 14.038 -8.772 6 A_A9:G22_A A 9 ? A 22 ? 11 9 1 A A 10 1_555 A U 21 1_555 -0.261 -0.152 -0.219 -1.769 -4.346 -0.118 7 A_A10:U21_A A 10 ? A 21 ? 20 1 1 A A 11 1_555 A U 20 1_555 0.216 -0.075 -0.093 1.032 -6.692 -1.455 8 A_A11:U20_A A 11 ? A 20 ? 20 1 1 A C 12 1_555 A G 19 1_555 0.275 -0.127 -0.129 5.909 9.235 -1.882 9 A_C12:G19_A A 12 ? A 19 ? 19 1 1 A U 13 1_555 A G 18 1_555 2.401 -0.014 0.550 11.805 19.709 19.959 10 A_U13:G18_A A 13 ? A 18 ? ? 1 1 A G 14 1_555 A A 17 1_555 5.922 -5.111 1.587 22.669 11.442 2.448 11 A_G14:A17_A A 14 ? A 17 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 2 1_555 A U 28 1_555 A U 3 1_555 A A 27 1_555 -0.007 -1.512 3.411 3.028 5.924 33.289 -3.545 0.500 3.092 10.214 -5.221 33.928 1 AA_A2U3:A27U28_AA A 2 ? A 28 ? A 3 ? A 27 ? 1 A U 3 1_555 A A 27 1_555 A A 4 1_555 A U 26 1_555 -0.101 -1.583 3.119 0.046 13.410 29.787 -4.815 0.187 2.220 24.579 -0.085 32.604 2 AA_U3A4:U26A27_AA A 3 ? A 27 ? A 4 ? A 26 ? 1 A A 4 1_555 A U 26 1_555 A C 5 1_555 A G 25 1_555 0.259 -1.474 3.400 -0.379 7.147 33.176 -3.666 -0.505 3.023 12.339 0.654 33.918 3 AA_A4C5:G25U26_AA A 4 ? A 26 ? A 5 ? A 25 ? 1 A C 5 1_555 A G 25 1_555 A U 7 1_555 A C 24 1_555 -0.145 -2.610 4.907 5.492 2.136 40.894 -4.040 1.078 4.713 3.039 -7.812 41.298 4 AA_C5U7:C24G25_AA A 5 ? A 25 ? A 7 ? A 24 ? 1 A A 9 1_555 A G 22 1_555 A A 10 1_555 A U 21 1_555 0.466 -0.595 4.296 -6.180 -0.755 55.380 -0.580 -0.967 4.233 -0.810 6.627 55.701 5 AA_A9A10:U21G22_AA A 9 ? A 22 ? A 10 ? A 21 ? 1 A A 10 1_555 A U 21 1_555 A A 11 1_555 A U 20 1_555 -0.200 -1.633 3.360 -0.362 9.118 29.876 -4.694 0.306 2.756 17.188 0.683 31.208 6 AA_A10A11:U20U21_AA A 10 ? A 21 ? A 11 ? A 20 ? 1 A A 11 1_555 A U 20 1_555 A C 12 1_555 A G 19 1_555 -0.046 -1.838 3.351 -1.271 7.879 29.883 -4.907 -0.148 2.787 14.946 2.412 30.907 7 AA_A11C12:G19U20_AA A 11 ? A 20 ? A 12 ? A 19 ? 1 A C 12 1_555 A G 19 1_555 A U 13 1_555 A G 18 1_555 0.823 -1.574 3.150 -5.482 22.579 33.565 -4.308 -1.681 1.662 34.451 8.365 40.631 8 AA_C12U13:G18G19_AA A 12 ? A 19 ? A 13 ? A 18 ? 1 A U 13 1_555 A G 18 1_555 A G 14 1_555 A A 17 1_555 -1.582 -1.103 2.974 -1.687 11.801 41.516 -2.517 2.008 2.639 16.249 2.323 43.121 9 AA_U13G14:A17G18_AA A 13 ? A 18 ? A 14 ? A 17 ? #