HEADER TRANSCRIPTION 02-NOV-07 2JX2 TITLE SOLUTION CONFORMATION OF RNA-BOUND NELF-E RRM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEGATIVE ELONGATION FACTOR E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN; COMPND 5 SYNONYM: NELF-E, RNA-BINDING PROTEIN RD; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RDBP, NELFE, RD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS NELFE-RRM, COILED COIL, NUCLEUS, PHOSPHORYLATION, REPRESSOR, RNA- KEYWDS 2 BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, UBL CONJUGATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.JAMPANI,K.SCHWEIMER,S.WENZEL,B.M.WOEHRL,P.ROESCH REVDAT 4 14-JUN-23 2JX2 1 REMARK REVDAT 3 19-FEB-20 2JX2 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JX2 1 VERSN REVDAT 1 08-APR-08 2JX2 0 JRNL AUTH J.N.RAO,K.SCHWEIMER,S.WENZEL,B.M.WOHRL,P.ROSCH JRNL TITL NELF-E RRM UNDERGOES MAJOR STRUCTURAL CHANGES IN FLEXIBLE JRNL TITL 2 PROTEIN REGIONS ON TARGET RNA BINDING JRNL REF BIOCHEMISTRY V. 47 3756 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18303858 JRNL DOI 10.1021/BI702429M REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, X-PLOR NIH REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JX2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000100398. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-98% 13C; U-98% 15N] REMARK 210 RNA BOUND NELFE-RRM, 0.8 MM REMARK 210 TAR(49-57), 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 160 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 GLY A 22 REMARK 465 PRO A 23 REMARK 465 PHE A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 SER A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 PHE A 30 REMARK 465 PRO A 31 REMARK 465 GLU A 32 REMARK 465 ARG A 33 REMARK 465 ARG A 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASN A 40 O TYR A 80 1.58 REMARK 500 O SER A 68 H PHE A 77 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 98 -154.31 -85.23 REMARK 500 1 SER A 100 24.75 -153.72 REMARK 500 1 GLN A 111 46.51 75.69 REMARK 500 1 LEU A 114 20.02 -155.53 REMARK 500 1 ALA A 116 -76.31 78.02 REMARK 500 1 ALA A 117 -148.35 -165.62 REMARK 500 2 VAL A 98 -148.84 -92.40 REMARK 500 2 SER A 100 30.64 -165.82 REMARK 500 2 ARG A 109 33.64 -99.77 REMARK 500 2 ALA A 116 -84.03 70.29 REMARK 500 2 ALA A 117 24.18 -162.69 REMARK 500 3 LYS A 38 -157.26 -122.94 REMARK 500 3 VAL A 98 -151.92 -101.59 REMARK 500 3 SER A 100 25.84 -165.98 REMARK 500 3 GLN A 111 98.56 -42.40 REMARK 500 3 LEU A 114 26.93 -150.68 REMARK 500 3 ALA A 116 -83.12 72.30 REMARK 500 4 LYS A 38 -167.73 -69.19 REMARK 500 4 VAL A 98 -151.99 -81.13 REMARK 500 4 SER A 100 22.81 -158.10 REMARK 500 4 GLN A 111 47.90 75.61 REMARK 500 4 LEU A 114 17.47 -148.49 REMARK 500 4 ASP A 115 45.24 39.92 REMARK 500 4 ALA A 116 -66.60 76.66 REMARK 500 5 LYS A 38 -162.50 44.49 REMARK 500 5 VAL A 98 -153.31 -108.56 REMARK 500 5 SER A 100 25.48 -162.86 REMARK 500 5 GLN A 111 73.33 -119.08 REMARK 500 5 LEU A 114 25.96 -142.66 REMARK 500 5 ALA A 116 -77.98 62.80 REMARK 500 6 LYS A 38 -163.21 -111.57 REMARK 500 6 GLU A 81 -34.54 -38.88 REMARK 500 6 VAL A 98 -157.48 -81.79 REMARK 500 6 SER A 100 24.04 -155.04 REMARK 500 6 LEU A 114 29.78 -176.01 REMARK 500 6 ALA A 116 -82.32 75.62 REMARK 500 6 ALA A 117 -166.05 -167.03 REMARK 500 7 LYS A 38 -166.01 -78.87 REMARK 500 7 ASN A 40 113.22 -171.23 REMARK 500 7 VAL A 98 -160.25 -113.26 REMARK 500 7 SER A 100 28.59 -164.90 REMARK 500 7 LEU A 114 26.87 -147.69 REMARK 500 7 ALA A 116 -80.57 72.08 REMARK 500 8 LYS A 38 -170.02 -55.36 REMARK 500 8 SER A 100 25.18 -155.59 REMARK 500 8 ALA A 108 -150.99 -114.62 REMARK 500 8 GLN A 111 98.03 61.42 REMARK 500 8 LEU A 114 29.21 -173.07 REMARK 500 8 ALA A 116 -78.18 76.72 REMARK 500 8 ALA A 117 30.29 -176.51 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 37 0.28 SIDE CHAIN REMARK 500 1 ARG A 55 0.19 SIDE CHAIN REMARK 500 1 ARG A 73 0.31 SIDE CHAIN REMARK 500 2 ARG A 37 0.22 SIDE CHAIN REMARK 500 2 ARG A 55 0.26 SIDE CHAIN REMARK 500 2 ARG A 73 0.20 SIDE CHAIN REMARK 500 2 ARG A 109 0.31 SIDE CHAIN REMARK 500 3 ARG A 37 0.31 SIDE CHAIN REMARK 500 3 ARG A 73 0.28 SIDE CHAIN REMARK 500 3 ARG A 109 0.27 SIDE CHAIN REMARK 500 4 ARG A 37 0.26 SIDE CHAIN REMARK 500 4 ARG A 55 0.29 SIDE CHAIN REMARK 500 4 ARG A 73 0.28 SIDE CHAIN REMARK 500 4 ARG A 109 0.21 SIDE CHAIN REMARK 500 5 ARG A 37 0.16 SIDE CHAIN REMARK 500 5 ARG A 55 0.31 SIDE CHAIN REMARK 500 5 ARG A 73 0.19 SIDE CHAIN REMARK 500 5 ARG A 109 0.28 SIDE CHAIN REMARK 500 6 ARG A 37 0.31 SIDE CHAIN REMARK 500 6 ARG A 55 0.17 SIDE CHAIN REMARK 500 6 ARG A 73 0.30 SIDE CHAIN REMARK 500 6 ARG A 109 0.12 SIDE CHAIN REMARK 500 7 ARG A 37 0.32 SIDE CHAIN REMARK 500 7 ARG A 55 0.31 SIDE CHAIN REMARK 500 7 ARG A 73 0.16 SIDE CHAIN REMARK 500 7 ARG A 109 0.29 SIDE CHAIN REMARK 500 8 ARG A 37 0.18 SIDE CHAIN REMARK 500 8 ARG A 55 0.29 SIDE CHAIN REMARK 500 8 ARG A 73 0.24 SIDE CHAIN REMARK 500 8 ARG A 109 0.22 SIDE CHAIN REMARK 500 9 ARG A 55 0.15 SIDE CHAIN REMARK 500 9 ARG A 73 0.31 SIDE CHAIN REMARK 500 9 ARG A 109 0.24 SIDE CHAIN REMARK 500 10 ARG A 37 0.31 SIDE CHAIN REMARK 500 10 ARG A 55 0.32 SIDE CHAIN REMARK 500 10 ARG A 73 0.32 SIDE CHAIN REMARK 500 10 ARG A 109 0.20 SIDE CHAIN REMARK 500 11 ARG A 37 0.31 SIDE CHAIN REMARK 500 11 ARG A 55 0.32 SIDE CHAIN REMARK 500 11 ARG A 73 0.29 SIDE CHAIN REMARK 500 11 ARG A 109 0.28 SIDE CHAIN REMARK 500 12 ARG A 37 0.31 SIDE CHAIN REMARK 500 12 ARG A 55 0.25 SIDE CHAIN REMARK 500 12 ARG A 73 0.12 SIDE CHAIN REMARK 500 12 ARG A 109 0.32 SIDE CHAIN REMARK 500 13 ARG A 37 0.08 SIDE CHAIN REMARK 500 13 ARG A 55 0.08 SIDE CHAIN REMARK 500 13 ARG A 73 0.17 SIDE CHAIN REMARK 500 13 ARG A 109 0.30 SIDE CHAIN REMARK 500 14 ARG A 55 0.20 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 76 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15543 RELATED DB: BMRB DBREF 2JX2 A 22 121 UNP P18615 NELFE_HUMAN 244 343 SEQADV 2JX2 MET A 1 UNP P18615 EXPRESSION TAG SEQADV 2JX2 GLY A 2 UNP P18615 EXPRESSION TAG SEQADV 2JX2 SER A 3 UNP P18615 EXPRESSION TAG SEQADV 2JX2 SER A 4 UNP P18615 EXPRESSION TAG SEQADV 2JX2 HIS A 5 UNP P18615 EXPRESSION TAG SEQADV 2JX2 HIS A 6 UNP P18615 EXPRESSION TAG SEQADV 2JX2 HIS A 7 UNP P18615 EXPRESSION TAG SEQADV 2JX2 HIS A 8 UNP P18615 EXPRESSION TAG SEQADV 2JX2 HIS A 9 UNP P18615 EXPRESSION TAG SEQADV 2JX2 HIS A 10 UNP P18615 EXPRESSION TAG SEQADV 2JX2 SER A 11 UNP P18615 EXPRESSION TAG SEQADV 2JX2 SER A 12 UNP P18615 EXPRESSION TAG SEQADV 2JX2 GLY A 13 UNP P18615 EXPRESSION TAG SEQADV 2JX2 LEU A 14 UNP P18615 EXPRESSION TAG SEQADV 2JX2 VAL A 15 UNP P18615 EXPRESSION TAG SEQADV 2JX2 PRO A 16 UNP P18615 EXPRESSION TAG SEQADV 2JX2 ARG A 17 UNP P18615 EXPRESSION TAG SEQADV 2JX2 GLY A 18 UNP P18615 EXPRESSION TAG SEQADV 2JX2 SER A 19 UNP P18615 EXPRESSION TAG SEQADV 2JX2 HIS A 20 UNP P18615 EXPRESSION TAG SEQADV 2JX2 MET A 21 UNP P18615 EXPRESSION TAG SEQRES 1 A 121 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 121 LEU VAL PRO ARG GLY SER HIS MET GLY PRO PHE ARG ARG SEQRES 3 A 121 SER ASP SER PHE PRO GLU ARG ARG ALA PRO ARG LYS GLY SEQRES 4 A 121 ASN THR LEU TYR VAL TYR GLY GLU ASP MET THR PRO THR SEQRES 5 A 121 LEU LEU ARG GLY ALA PHE SER PRO PHE GLY ASN ILE ILE SEQRES 6 A 121 ASP LEU SER MET ASP PRO PRO ARG ASN CYS ALA PHE VAL SEQRES 7 A 121 THR TYR GLU LYS MET GLU SER ALA ASP GLN ALA VAL ALA SEQRES 8 A 121 GLU LEU ASN GLY THR GLN VAL GLU SER VAL GLN LEU LYS SEQRES 9 A 121 VAL ASN ILE ALA ARG LYS GLN PRO MET LEU ASP ALA ALA SEQRES 10 A 121 THR GLY LYS SER HELIX 1 1 THR A 50 SER A 59 1 10 HELIX 2 2 LYS A 82 ASN A 94 1 13 SHEET 1 A 5 ILE A 64 ASP A 70 0 SHEET 2 A 5 CYS A 75 TYR A 80 -1 O PHE A 77 N SER A 68 SHEET 3 A 5 ASN A 40 TYR A 45 -1 N ASN A 40 O TYR A 80 SHEET 4 A 5 GLN A 102 ILE A 107 -1 O ASN A 106 N TYR A 43 SHEET 5 A 5 THR A 96 GLN A 97 -1 N THR A 96 O LEU A 103 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1