HEADER RIBOSOMAL PROTEIN 07-NOV-07 2JX5 TITLE SOLUTION STRUCTURE OF THE UBIQUITIN DOMAIN N-TERMINAL TO THE S27A TITLE 2 RIBOSOMAL SUBUNIT OF GIARDIA LAMBLIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUB(S27A); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-67; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIARDIA LAMBLIA ATCC 50803; SOURCE 3 ORGANISM_TAXID: 184922; SOURCE 4 STRAIN: MR4; SOURCE 5 GENE: S27A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 11 OTHER_DETAILS: CONTAINS GB1 DOMAIN AT THE N-TERMINUS AND 6-HIS TAG SOURCE 12 AT THE C-TERMINUS (BOTH EXCLUDED FROM STRUCTURE CALCULATIONS) KEYWDS UBIQUITIN, RIBOSOME, RECOMBINATION, GLUB, EVOLUTION, RIBOSOMAL KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.CATIC,Z.J.SUN,D.M.RATNER,S.MISAGHI,E.SPOONER,J.SAMUELSON,G.WAGNER, AUTHOR 2 H.L.PLOEGH REVDAT 3 16-MAR-22 2JX5 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JX5 1 VERSN REVDAT 1 04-DEC-07 2JX5 0 JRNL AUTH A.CATIC,Z.J.SUN,D.M.RATNER,S.MISAGHI,E.SPOONER,J.SAMUELSON, JRNL AUTH 2 G.WAGNER,H.L.PLOEGH JRNL TITL SEQUENCE AND STRUCTURE EVOLVED SEPARATELY IN A RIBOSOMAL JRNL TITL 2 UBIQUITIN VARIANT JRNL REF EMBO J. V. 26 3474 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17599068 JRNL DOI 10.1038/SJ.EMBOJ.7601772 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROSA 3.7, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT (PROSA), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DEFAULT ANNEAL MACRO WITH 10000 STEPS REMARK 3 INCLUDE 20 STEREOSPECIFIC SSIGNMENT FOR METHYL GROUPS REMARK 4 REMARK 4 2JX5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000100401. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 GLUB(S27A), 10 MM POTASSIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 10 % D2O, 90% H2O/10% REMARK 210 D2O; 1 MM GLUB(S27A), 10 MM REMARK 210 POTASSIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 100% D2O; 1 MM REMARK 210 [U-10% 13C] GLUB(S27A), 10 MM REMARK 210 POTASSIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D HNCO; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N NOESY; 2D REMARK 210 1H-1H NOESY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.2, RNMRTK 3, TALOS REMARK 210 2003.027.13.05, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 8 -61.42 -26.95 REMARK 500 1 ALA A 20 171.96 -52.22 REMARK 500 1 LEU A 51 -90.21 -74.82 REMARK 500 1 ASN A 52 -168.50 177.79 REMARK 500 1 ALA A 66 -81.51 66.49 REMARK 500 2 GLN A 8 -61.76 -26.90 REMARK 500 2 ALA A 20 150.12 -48.11 REMARK 500 2 SER A 46 -171.69 -62.67 REMARK 500 2 ASN A 52 -167.53 -166.30 REMARK 500 3 GLN A 8 -56.07 -28.87 REMARK 500 3 SER A 32 176.80 -57.85 REMARK 500 3 ALA A 35 83.36 -160.48 REMARK 500 3 SER A 46 -170.77 -62.61 REMARK 500 3 ASP A 64 107.91 -51.62 REMARK 500 4 GLN A 8 -56.14 -28.23 REMARK 500 4 ASP A 9 42.44 -141.01 REMARK 500 4 ALA A 20 163.69 -48.16 REMARK 500 4 MET A 34 93.92 -63.27 REMARK 500 4 ALA A 35 -169.86 -101.34 REMARK 500 4 LEU A 51 -86.27 -96.02 REMARK 500 4 ASN A 52 -153.15 -179.85 REMARK 500 4 MET A 55 -179.17 -64.68 REMARK 500 5 GLN A 8 -52.38 -29.74 REMARK 500 5 ALA A 20 150.22 -44.86 REMARK 500 5 SER A 32 -169.55 -60.71 REMARK 500 5 LEU A 51 -161.64 -76.03 REMARK 500 6 GLN A 8 -54.90 -27.94 REMARK 500 6 ASP A 9 43.17 -143.33 REMARK 500 6 MET A 34 -169.31 50.78 REMARK 500 7 GLN A 8 -57.77 -27.85 REMARK 500 7 ASP A 9 40.93 -140.40 REMARK 500 7 ALA A 20 161.79 -47.96 REMARK 500 7 ALA A 35 94.07 -167.02 REMARK 500 7 LEU A 51 -88.80 -90.97 REMARK 500 7 ASN A 52 -179.52 178.12 REMARK 500 7 LYS A 54 53.10 38.07 REMARK 500 7 ALA A 66 90.31 51.68 REMARK 500 8 ALA A 20 161.71 -48.87 REMARK 500 8 ASN A 52 -166.90 -117.56 REMARK 500 9 GLN A 8 -61.29 -27.95 REMARK 500 9 ALA A 20 175.46 -52.06 REMARK 500 9 LEU A 51 -173.88 -58.60 REMARK 500 9 MET A 55 -166.58 -107.65 REMARK 500 9 ASP A 64 -167.12 50.17 REMARK 500 10 GLN A 8 -55.53 -26.41 REMARK 500 10 ASP A 9 37.92 -146.79 REMARK 500 10 ALA A 20 155.27 -48.94 REMARK 500 10 LEU A 51 -92.65 -92.42 REMARK 500 10 ASN A 52 -167.91 177.66 REMARK 500 10 MET A 55 165.84 -49.12 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JX5 A 1 67 UNP A8BNY1 A8BNY1_GIALA 1 67 SEQADV 2JX5 LEU A 68 UNP A8BNY1 EXPRESSION TAG SEQADV 2JX5 GLU A 69 UNP A8BNY1 EXPRESSION TAG SEQRES 1 A 69 MET LEU VAL ILE VAL ARG LEU GLN ASP GLN THR LEU PRO SEQRES 2 A 69 PHE GLU LEU PRO ALA GLY ALA ARG ALA SER GLN LEU SER SEQRES 3 A 69 ASN LEU LEU SER SER SER GLY MET ALA PHE SER LEU HIS SEQRES 4 A 69 THR GLN GLY ARG VAL LEU SER GLU ALA ALA GLU LEU ASN SEQRES 5 A 69 ASP LYS MET VAL ILE ASP ALA PHE VAL PRO ALA ASP GLY SEQRES 6 A 69 ALA GLY LEU GLU HELIX 1 1 ARG A 21 SER A 32 1 12 SHEET 1 A 5 GLN A 10 GLU A 15 0 SHEET 2 A 5 LEU A 2 LEU A 7 -1 N VAL A 3 O PHE A 14 SHEET 3 A 5 MET A 55 PHE A 60 1 O ILE A 57 N ARG A 6 SHEET 4 A 5 SER A 37 THR A 40 -1 N HIS A 39 O ASP A 58 SHEET 5 A 5 ARG A 43 VAL A 44 -1 O ARG A 43 N THR A 40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1