data_2JX6 # _entry.id 2JX6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JX6 pdb_00002jx6 10.2210/pdb2jx6/pdb RCSB RCSB100402 ? ? WWPDB D_1000100402 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 4 'Structure model' 1 3 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_conn 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' pdbx_entry_details 10 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JX6 _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-11-08 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mendonca Moraes, C.' 1 'Verly, R.M.' 2 'Resende, J.M.' 3 'Bemquerer, M.P.' 4 'Pilo-Veloso, D.' 5 'Valente, A.' 6 'Almeida, F.C.L.' 7 'Bechinger, B.' 8 # _citation.id primary _citation.title ;Structure and membrane interactions of the antibiotic peptide dermadistinctin K by multidimensional solution and oriented 15N and 31P solid-state NMR spectroscopy ; _citation.journal_abbrev Biophys.J. _citation.journal_volume 96 _citation.page_first 2194 _citation.page_last 2203 _citation.year 2009 _citation.journal_id_ASTM BIOJAU _citation.country US _citation.journal_id_ISSN 0006-3495 _citation.journal_id_CSD 0030 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19289046 _citation.pdbx_database_id_DOI 10.1016/j.bpj.2008.11.063 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Verly, R.M.' 1 ? primary 'de Moraes, C.M.' 2 ? primary 'Resende, J.M.' 3 ? primary 'Aisenbrey, C.' 4 ? primary 'Bemquerer, M.P.' 5 ? primary 'Pilo-Veloso, D.' 6 ? primary 'Valente, A.P.' 7 ? primary 'Almeida, F.C.L.' 8 ? primary 'Bechinger, B.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Dermadistinctin-K _entity.formula_weight 3156.699 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DD K' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GLWSKIKAAGKEAAKAAAKAAGKAALNAVSEAV(NH2)' _entity_poly.pdbx_seq_one_letter_code_can GLWSKIKAAGKEAAKAAAKAAGKAALNAVSEAVX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 TRP n 1 4 SER n 1 5 LYS n 1 6 ILE n 1 7 LYS n 1 8 ALA n 1 9 ALA n 1 10 GLY n 1 11 LYS n 1 12 GLU n 1 13 ALA n 1 14 ALA n 1 15 LYS n 1 16 ALA n 1 17 ALA n 1 18 ALA n 1 19 LYS n 1 20 ALA n 1 21 ALA n 1 22 GLY n 1 23 LYS n 1 24 ALA n 1 25 ALA n 1 26 LEU n 1 27 ASN n 1 28 ALA n 1 29 VAL n 1 30 SER n 1 31 GLU n 1 32 ALA n 1 33 VAL n 1 34 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Phyllomedusa distincta' _pdbx_entity_src_syn.organism_common_name 'Monkey frog' _pdbx_entity_src_syn.ncbi_taxonomy_id 164618 _pdbx_entity_src_syn.details ;The peptide was synthesized by solid-phase synthesis using fmoc chemistry. The peptide is an antimicrobial peptide that is naturally found from the skin secretion of phyllomedusa distincta, a frog species found in brazilian forests. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 NH2 34 34 34 NH2 NH2 A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JX6 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JX6 _struct.title ;Structure and membrane interactions of the antibiotic peptide dermadistinctin k by solution and oriented 15N and 31P solid-state NMR spectroscopy ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JX6 _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text ;ALPHA HELIX, AMPHIPATHIC CHARACTER, C-TERMINAL CARBOXYAMIDATION, MEMBRANE PEPTIDE, Amphibian defense peptide, Antibiotic, Antimicrobial, Secreted, ANTIMICROBIAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DDSK_PHYDS _struct_ref.pdbx_db_accession P83638 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GLWSKIKAAGKEAAKAAAKAAGKAALNAVSEAV _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JX6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 33 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P83638 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 33 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 33 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id LYS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 7 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id VAL _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 33 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LYS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 7 _struct_conf.end_auth_comp_id VAL _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 33 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id VAL _struct_conn.ptnr1_label_seq_id 33 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id NH2 _struct_conn.ptnr2_label_seq_id 34 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id VAL _struct_conn.ptnr1_auth_seq_id 33 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NH2 _struct_conn.ptnr2_auth_seq_id 34 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.307 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id NH2 _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 34 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id VAL _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 33 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id NH2 _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 34 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id VAL _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 33 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id VAL _pdbx_modification_feature.ref_pcm_id 2 _pdbx_modification_feature.ref_comp_id NH2 _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Terminal amidation' # _pdbx_entry_details.entry_id 2JX6 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 3 ? ? -98.77 31.64 2 1 SER A 4 ? ? 52.16 -171.56 3 1 LYS A 5 ? ? -162.80 -47.11 4 1 ILE A 6 ? ? -117.26 66.33 5 1 ALA A 13 ? ? -60.37 -75.37 6 1 ALA A 16 ? ? 179.54 -62.82 7 2 ALA A 13 ? ? -55.03 -76.76 8 2 ALA A 16 ? ? -175.74 -62.59 9 3 TRP A 3 ? ? -67.53 77.06 10 3 ALA A 13 ? ? -58.10 -90.47 11 3 LYS A 15 ? ? -162.45 77.32 12 3 ALA A 16 ? ? 177.18 -62.75 13 4 TRP A 3 ? ? -160.26 39.97 14 4 SER A 4 ? ? -148.47 48.00 15 4 ALA A 13 ? ? -52.04 -80.83 16 4 ALA A 16 ? ? -179.60 -63.56 17 5 TRP A 3 ? ? -167.33 91.24 18 5 SER A 4 ? ? -141.99 -47.95 19 5 ALA A 13 ? ? -51.75 -77.96 20 5 LYS A 15 ? ? -170.44 54.14 21 5 ALA A 16 ? ? -176.87 -63.19 22 6 SER A 4 ? ? -113.09 74.71 23 6 ALA A 13 ? ? -52.74 -81.30 24 6 ALA A 16 ? ? 178.60 -62.78 25 7 LYS A 5 ? ? -165.54 -42.08 26 7 ALA A 13 ? ? -52.47 -92.30 27 7 LYS A 15 ? ? -68.36 76.13 28 7 ALA A 16 ? ? 176.79 -63.01 29 8 SER A 4 ? ? -164.14 45.48 30 8 ILE A 6 ? ? -104.26 56.14 31 8 LYS A 7 ? ? -100.77 -68.57 32 8 ALA A 13 ? ? -60.94 -73.17 33 8 LYS A 15 ? ? -90.85 52.86 34 8 ALA A 16 ? ? -179.40 -63.17 35 9 LYS A 5 ? ? -69.71 -158.70 36 9 ALA A 13 ? ? -52.94 -77.28 37 9 ALA A 16 ? ? -179.55 -63.31 38 10 TRP A 3 ? ? -95.89 41.31 39 10 LYS A 5 ? ? -101.43 -63.85 40 10 ALA A 13 ? ? -52.81 -75.22 41 10 ALA A 16 ? ? 179.35 -61.95 42 10 ALA A 28 ? ? -136.54 -59.23 43 11 LYS A 5 ? ? 53.31 -172.63 44 11 ALA A 13 ? ? -52.50 -80.78 45 11 ALA A 16 ? ? 178.50 -62.91 46 12 ILE A 6 ? ? -108.15 65.47 47 12 LYS A 7 ? ? -129.71 -55.27 48 12 ALA A 13 ? ? -52.46 -76.56 49 12 ALA A 16 ? ? 178.03 -62.21 50 13 TRP A 3 ? ? 52.44 88.45 51 13 ILE A 6 ? ? -101.89 59.24 52 13 ALA A 13 ? ? -53.96 -71.53 53 13 ALA A 16 ? ? 176.85 -63.28 54 13 ALA A 28 ? ? -75.38 -70.49 55 14 LYS A 5 ? ? -121.47 -68.74 56 14 ILE A 6 ? ? -104.93 48.13 57 14 ALA A 13 ? ? -52.89 -76.30 58 14 ALA A 16 ? ? 178.11 -62.42 59 14 ALA A 28 ? ? -156.13 -60.21 60 15 ILE A 6 ? ? -92.27 50.72 61 15 ALA A 13 ? ? -54.76 -76.93 62 15 ALA A 16 ? ? -177.76 -61.94 63 15 ALA A 28 ? ? -147.67 -58.80 64 16 LEU A 2 ? ? -154.10 -73.03 65 16 LYS A 5 ? ? 53.47 -178.96 66 16 ALA A 13 ? ? -59.86 -79.11 67 16 ALA A 16 ? ? 178.81 -63.08 68 17 ALA A 13 ? ? -57.72 -72.66 69 17 ALA A 16 ? ? 179.02 -63.35 70 17 ALA A 28 ? ? -161.75 -59.58 71 18 SER A 4 ? ? -64.48 99.03 72 18 ILE A 6 ? ? -108.15 78.40 73 18 LYS A 7 ? ? -125.95 -62.54 74 18 ALA A 13 ? ? -52.25 -81.71 75 18 ALA A 16 ? ? 178.62 -62.97 76 19 ALA A 13 ? ? -53.79 -78.50 77 19 ALA A 16 ? ? 179.59 -62.77 78 20 LEU A 2 ? ? -97.47 30.88 79 20 LYS A 7 ? ? -92.65 -71.75 80 20 ALA A 13 ? ? -52.73 -76.72 81 20 ALA A 16 ? ? 178.78 -62.40 82 20 ALA A 32 ? ? -90.65 -65.65 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JX6 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 19 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JX6 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '2.0mM dermadistinctin k; trifluoroethanol; H2O 60%, D2O 40%' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system 'trifluoroethanol; H2O 60%, D2O 40%' # _pdbx_nmr_exptl_sample.component 'dermadistinctin k' _pdbx_nmr_exptl_sample.concentration 2.0 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293.15 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-13C HSQC' 1 4 1 '2D 1H-15N HSQC' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2JX6 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 294 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 178 _pdbx_nmr_constraints.NOE_long_range_total_count 0 _pdbx_nmr_constraints.NOE_medium_range_total_count 38 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 78 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2JX6 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;NOE intensities were converted into semi-quantitative distances restrains. The upper limits of the distances thus obtained were 2.8, 3.4 and 5.0A; (for strong, medium, and weak NOEs, respectively). Structure calculations were performed using the Xplor-NIH software, version 2.17.0 . Starting with the extended structure, 500 structures were generated using a simulated annealing protocol. This was followed by 20000 steps of simulated annealing at 1000 K and a subsequent decrease in tempera ure in 15000 steps in the first slow-cool annealing stage. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection XwinNMR ? 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 2 'Johnson, One Moon Scientific' 'data analysis' NMRView 5.0.4 3 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView 5.0.4 4 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.17.0 5 'Schwieters, Kuszewski, Tjandra and Clore' 'geometry optimization' 'X-PLOR NIH' 2.17.0 6 'Koradi, Billeter and Wuthrich' 'data analysis' MOLMOL 2K.2 7 'Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Th' 'data analysis' Procheck 3.5.4 8 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2.17.0 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 GLU N N N N 31 GLU CA C N S 32 GLU C C N N 33 GLU O O N N 34 GLU CB C N N 35 GLU CG C N N 36 GLU CD C N N 37 GLU OE1 O N N 38 GLU OE2 O N N 39 GLU OXT O N N 40 GLU H H N N 41 GLU H2 H N N 42 GLU HA H N N 43 GLU HB2 H N N 44 GLU HB3 H N N 45 GLU HG2 H N N 46 GLU HG3 H N N 47 GLU HE2 H N N 48 GLU HXT H N N 49 GLY N N N N 50 GLY CA C N N 51 GLY C C N N 52 GLY O O N N 53 GLY OXT O N N 54 GLY H H N N 55 GLY H2 H N N 56 GLY HA2 H N N 57 GLY HA3 H N N 58 GLY HXT H N N 59 ILE N N N N 60 ILE CA C N S 61 ILE C C N N 62 ILE O O N N 63 ILE CB C N S 64 ILE CG1 C N N 65 ILE CG2 C N N 66 ILE CD1 C N N 67 ILE OXT O N N 68 ILE H H N N 69 ILE H2 H N N 70 ILE HA H N N 71 ILE HB H N N 72 ILE HG12 H N N 73 ILE HG13 H N N 74 ILE HG21 H N N 75 ILE HG22 H N N 76 ILE HG23 H N N 77 ILE HD11 H N N 78 ILE HD12 H N N 79 ILE HD13 H N N 80 ILE HXT H N N 81 LEU N N N N 82 LEU CA C N S 83 LEU C C N N 84 LEU O O N N 85 LEU CB C N N 86 LEU CG C N N 87 LEU CD1 C N N 88 LEU CD2 C N N 89 LEU OXT O N N 90 LEU H H N N 91 LEU H2 H N N 92 LEU HA H N N 93 LEU HB2 H N N 94 LEU HB3 H N N 95 LEU HG H N N 96 LEU HD11 H N N 97 LEU HD12 H N N 98 LEU HD13 H N N 99 LEU HD21 H N N 100 LEU HD22 H N N 101 LEU HD23 H N N 102 LEU HXT H N N 103 LYS N N N N 104 LYS CA C N S 105 LYS C C N N 106 LYS O O N N 107 LYS CB C N N 108 LYS CG C N N 109 LYS CD C N N 110 LYS CE C N N 111 LYS NZ N N N 112 LYS OXT O N N 113 LYS H H N N 114 LYS H2 H N N 115 LYS HA H N N 116 LYS HB2 H N N 117 LYS HB3 H N N 118 LYS HG2 H N N 119 LYS HG3 H N N 120 LYS HD2 H N N 121 LYS HD3 H N N 122 LYS HE2 H N N 123 LYS HE3 H N N 124 LYS HZ1 H N N 125 LYS HZ2 H N N 126 LYS HZ3 H N N 127 LYS HXT H N N 128 NH2 N N N N 129 NH2 HN1 H N N 130 NH2 HN2 H N N 131 SER N N N N 132 SER CA C N S 133 SER C C N N 134 SER O O N N 135 SER CB C N N 136 SER OG O N N 137 SER OXT O N N 138 SER H H N N 139 SER H2 H N N 140 SER HA H N N 141 SER HB2 H N N 142 SER HB3 H N N 143 SER HG H N N 144 SER HXT H N N 145 TRP N N N N 146 TRP CA C N S 147 TRP C C N N 148 TRP O O N N 149 TRP CB C N N 150 TRP CG C Y N 151 TRP CD1 C Y N 152 TRP CD2 C Y N 153 TRP NE1 N Y N 154 TRP CE2 C Y N 155 TRP CE3 C Y N 156 TRP CZ2 C Y N 157 TRP CZ3 C Y N 158 TRP CH2 C Y N 159 TRP OXT O N N 160 TRP H H N N 161 TRP H2 H N N 162 TRP HA H N N 163 TRP HB2 H N N 164 TRP HB3 H N N 165 TRP HD1 H N N 166 TRP HE1 H N N 167 TRP HE3 H N N 168 TRP HZ2 H N N 169 TRP HZ3 H N N 170 TRP HH2 H N N 171 TRP HXT H N N 172 VAL N N N N 173 VAL CA C N S 174 VAL C C N N 175 VAL O O N N 176 VAL CB C N N 177 VAL CG1 C N N 178 VAL CG2 C N N 179 VAL OXT O N N 180 VAL H H N N 181 VAL H2 H N N 182 VAL HA H N N 183 VAL HB H N N 184 VAL HG11 H N N 185 VAL HG12 H N N 186 VAL HG13 H N N 187 VAL HG21 H N N 188 VAL HG22 H N N 189 VAL HG23 H N N 190 VAL HXT H N N 191 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 GLU N CA sing N N 29 GLU N H sing N N 30 GLU N H2 sing N N 31 GLU CA C sing N N 32 GLU CA CB sing N N 33 GLU CA HA sing N N 34 GLU C O doub N N 35 GLU C OXT sing N N 36 GLU CB CG sing N N 37 GLU CB HB2 sing N N 38 GLU CB HB3 sing N N 39 GLU CG CD sing N N 40 GLU CG HG2 sing N N 41 GLU CG HG3 sing N N 42 GLU CD OE1 doub N N 43 GLU CD OE2 sing N N 44 GLU OE2 HE2 sing N N 45 GLU OXT HXT sing N N 46 GLY N CA sing N N 47 GLY N H sing N N 48 GLY N H2 sing N N 49 GLY CA C sing N N 50 GLY CA HA2 sing N N 51 GLY CA HA3 sing N N 52 GLY C O doub N N 53 GLY C OXT sing N N 54 GLY OXT HXT sing N N 55 ILE N CA sing N N 56 ILE N H sing N N 57 ILE N H2 sing N N 58 ILE CA C sing N N 59 ILE CA CB sing N N 60 ILE CA HA sing N N 61 ILE C O doub N N 62 ILE C OXT sing N N 63 ILE CB CG1 sing N N 64 ILE CB CG2 sing N N 65 ILE CB HB sing N N 66 ILE CG1 CD1 sing N N 67 ILE CG1 HG12 sing N N 68 ILE CG1 HG13 sing N N 69 ILE CG2 HG21 sing N N 70 ILE CG2 HG22 sing N N 71 ILE CG2 HG23 sing N N 72 ILE CD1 HD11 sing N N 73 ILE CD1 HD12 sing N N 74 ILE CD1 HD13 sing N N 75 ILE OXT HXT sing N N 76 LEU N CA sing N N 77 LEU N H sing N N 78 LEU N H2 sing N N 79 LEU CA C sing N N 80 LEU CA CB sing N N 81 LEU CA HA sing N N 82 LEU C O doub N N 83 LEU C OXT sing N N 84 LEU CB CG sing N N 85 LEU CB HB2 sing N N 86 LEU CB HB3 sing N N 87 LEU CG CD1 sing N N 88 LEU CG CD2 sing N N 89 LEU CG HG sing N N 90 LEU CD1 HD11 sing N N 91 LEU CD1 HD12 sing N N 92 LEU CD1 HD13 sing N N 93 LEU CD2 HD21 sing N N 94 LEU CD2 HD22 sing N N 95 LEU CD2 HD23 sing N N 96 LEU OXT HXT sing N N 97 LYS N CA sing N N 98 LYS N H sing N N 99 LYS N H2 sing N N 100 LYS CA C sing N N 101 LYS CA CB sing N N 102 LYS CA HA sing N N 103 LYS C O doub N N 104 LYS C OXT sing N N 105 LYS CB CG sing N N 106 LYS CB HB2 sing N N 107 LYS CB HB3 sing N N 108 LYS CG CD sing N N 109 LYS CG HG2 sing N N 110 LYS CG HG3 sing N N 111 LYS CD CE sing N N 112 LYS CD HD2 sing N N 113 LYS CD HD3 sing N N 114 LYS CE NZ sing N N 115 LYS CE HE2 sing N N 116 LYS CE HE3 sing N N 117 LYS NZ HZ1 sing N N 118 LYS NZ HZ2 sing N N 119 LYS NZ HZ3 sing N N 120 LYS OXT HXT sing N N 121 NH2 N HN1 sing N N 122 NH2 N HN2 sing N N 123 SER N CA sing N N 124 SER N H sing N N 125 SER N H2 sing N N 126 SER CA C sing N N 127 SER CA CB sing N N 128 SER CA HA sing N N 129 SER C O doub N N 130 SER C OXT sing N N 131 SER CB OG sing N N 132 SER CB HB2 sing N N 133 SER CB HB3 sing N N 134 SER OG HG sing N N 135 SER OXT HXT sing N N 136 TRP N CA sing N N 137 TRP N H sing N N 138 TRP N H2 sing N N 139 TRP CA C sing N N 140 TRP CA CB sing N N 141 TRP CA HA sing N N 142 TRP C O doub N N 143 TRP C OXT sing N N 144 TRP CB CG sing N N 145 TRP CB HB2 sing N N 146 TRP CB HB3 sing N N 147 TRP CG CD1 doub Y N 148 TRP CG CD2 sing Y N 149 TRP CD1 NE1 sing Y N 150 TRP CD1 HD1 sing N N 151 TRP CD2 CE2 doub Y N 152 TRP CD2 CE3 sing Y N 153 TRP NE1 CE2 sing Y N 154 TRP NE1 HE1 sing N N 155 TRP CE2 CZ2 sing Y N 156 TRP CE3 CZ3 doub Y N 157 TRP CE3 HE3 sing N N 158 TRP CZ2 CH2 doub Y N 159 TRP CZ2 HZ2 sing N N 160 TRP CZ3 CH2 sing Y N 161 TRP CZ3 HZ3 sing N N 162 TRP CH2 HH2 sing N N 163 TRP OXT HXT sing N N 164 VAL N CA sing N N 165 VAL N H sing N N 166 VAL N H2 sing N N 167 VAL CA C sing N N 168 VAL CA CB sing N N 169 VAL CA HA sing N N 170 VAL C O doub N N 171 VAL C OXT sing N N 172 VAL CB CG1 sing N N 173 VAL CB CG2 sing N N 174 VAL CB HB sing N N 175 VAL CG1 HG11 sing N N 176 VAL CG1 HG12 sing N N 177 VAL CG1 HG13 sing N N 178 VAL CG2 HG21 sing N N 179 VAL CG2 HG22 sing N N 180 VAL CG2 HG23 sing N N 181 VAL OXT HXT sing N N 182 # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model 'AVANCE DRX' _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance DRX' # _atom_sites.entry_id 2JX6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ #