HEADER HYDROLASE/HYDROLASE INHIBITOR 24-APR-97 2JXR TITLE STRUCTURE OF YEAST PROTEINASE A CAVEAT 2JXR THR A 16 HAS WRONG CHIRALITY AT ATOM CB ASN A 43 HAS WRONG CAVEAT 2 2JXR CHIRALITY AT ATOM CA SER A 63 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 2JXR CA ASN A 161 HAS WRONG CHIRALITY AT ATOM CA TRP A 241 HAS CAVEAT 4 2JXR WRONG CHIRALITY AT ATOM CA MAN B 5 HAS WRONG CHIRALITY AT CAVEAT 5 2JXR ATOM C1 MAN B 5 HAS WRONG CHIRALITY AT ATOM C2 MAN B 5 HAS CAVEAT 6 2JXR WRONG CHIRALITY AT ATOM C5 NAG A 337 HAS WRONG CHIRALITY AT CAVEAT 7 2JXR ATOM C1 NAG A 337 HAS WRONG CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SACCHAROPEPSIN, YEAST ENDOPEPTIDASE A; COMPND 5 EC: 3.4.23.25; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS HYDROLASE-HYDROLASE INHIBITOR COMPLEX, ASPARTYL PROTEASE, KEYWDS 2 GLYCOPROTEIN, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR C.F.AGUILAR,M.BADASSO,T.DREYER,N.B.CRONIN,M.P.NEWMAN,J.B.COOPER, AUTHOR 2 D.J.HOOVER,S.P.WOOD,M.S.JOHNSON,T.L.BLUNDELL REVDAT 5 03-NOV-21 2JXR 1 SEQADV HETSYN REVDAT 4 29-JUL-20 2JXR 1 CAVEAT COMPND REMARK HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 13-JUL-11 2JXR 1 VERSN REVDAT 2 24-FEB-09 2JXR 1 VERSN REVDAT 1 29-OCT-97 2JXR 0 SPRSDE 29-OCT-97 2JXR 1JXR JRNL AUTH C.F.AGUILAR,N.B.CRONIN,M.BADASSO,T.DREYER,M.P.NEWMAN, JRNL AUTH 2 J.B.COOPER,D.J.HOOVER,S.P.WOOD,M.S.JOHNSON,T.L.BLUNDELL JRNL TITL THE THREE-DIMENSIONAL STRUCTURE AT 2.4 A RESOLUTION OF JRNL TITL 2 GLYCOSYLATED PROTEINASE A FROM THE LYSOSOME-LIKE VACUOLE OF JRNL TITL 3 SACCHAROMYCES CEREVISIAE. JRNL REF J.MOL.BIOL. V. 267 899 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9135120 JRNL DOI 10.1006/JMBI.1996.0880 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : RESTRAIN REMARK 3 AUTHORS : MOSS,DRIESSEN,HANEEF,HOWLIN,HARRIS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 18013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 121 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LOOP RESIDUES A 140 - A 142 WERE REMARK 3 MODELED STEREOCHEMICALLY. REMARK 4 REMARK 4 2JXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-93 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AGROVATA, WEIS REMARK 200 DATA SCALING SOFTWARE : AGROVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18325 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.60000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.80000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.80000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.60000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 260 CZ PHE A 260 CE2 0.120 REMARK 500 VAL A 301 CB VAL A 301 CG1 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 2 CA - CB - CG ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 3 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 VAL A 4 CA - CB - CG2 ANGL. DEV. = 22.9 DEGREES REMARK 500 TYR A 14 CG - CD2 - CE2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 15 CG - CD1 - CE1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ASP A 17 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ILE A 30 CB - CG1 - CD1 ANGL. DEV. = 17.6 DEGREES REMARK 500 SER A 35 C - N - CA ANGL. DEV. = 24.4 DEGREES REMARK 500 LEU A 38 CB - CG - CD1 ANGL. DEV. = 14.8 DEGREES REMARK 500 ASN A 43 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 TYR A 56 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 57 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ALA A 60 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 SER A 63 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 LEU A 80 CA - CB - CG ANGL. DEV. = 20.0 DEGREES REMARK 500 ILE A 91 CA - C - N ANGL. DEV. = 13.4 DEGREES REMARK 500 GLY A 92 C - N - CA ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP A 93 CB - CG - OD1 ANGL. DEV. = -10.2 DEGREES REMARK 500 LEU A 94 CB - CG - CD2 ANGL. DEV. = -14.1 DEGREES REMARK 500 PRO A 108 C - N - CA ANGL. DEV. = -13.7 DEGREES REMARK 500 PRO A 108 C - N - CD ANGL. DEV. = 16.3 DEGREES REMARK 500 LEU A 121 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 GLY A 122 C - N - CA ANGL. DEV. = 16.8 DEGREES REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ILE A 128 CB - CG1 - CD1 ANGL. DEV. = -19.9 DEGREES REMARK 500 ASP A 131 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LYS A 132 CD - CE - NZ ANGL. DEV. = 20.6 DEGREES REMARK 500 VAL A 133 CA - CB - CG1 ANGL. DEV. = -10.9 DEGREES REMARK 500 VAL A 134 CG1 - CB - CG2 ANGL. DEV. = -11.9 DEGREES REMARK 500 LEU A 145 CB - CG - CD2 ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 150 CB - CG - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 PHE A 153 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 TYR A 154 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 159B CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASN A 161 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP A 171 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 PHE A 175 CG - CD1 - CE1 ANGL. DEV. = 9.4 DEGREES REMARK 500 PHE A 175 CD1 - CE1 - CZ ANGL. DEV. = -9.6 DEGREES REMARK 500 LYS A 176 CA - CB - CG ANGL. DEV. = 23.9 DEGREES REMARK 500 THR A 180 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 VAL A 184 CA - CB - CG1 ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 186 CA - CB - CG ANGL. DEV. = 22.8 DEGREES REMARK 500 ARG A 186 CG - CD - NE ANGL. DEV. = 21.0 DEGREES REMARK 500 LYS A 187 CD - CE - NZ ANGL. DEV. = -15.8 DEGREES REMARK 500 LYS A 193 CA - CB - CG ANGL. DEV. = 20.4 DEGREES REMARK 500 LYS A 193 CG - CD - CE ANGL. DEV. = 20.5 DEGREES REMARK 500 TYR A 203 CB - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP A 215 CB - CG - OD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP A 215 CB - CG - OD2 ANGL. DEV. = -9.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 73 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 -30.13 -155.39 REMARK 500 ASP A 87 176.76 174.40 REMARK 500 ASP A 159B -151.12 -114.46 REMARK 500 THR A 159C -85.97 -172.63 REMARK 500 ASN A 161 99.40 -48.82 REMARK 500 ALA A 188 -59.45 -148.40 REMARK 500 LEU A 220 -150.97 -112.37 REMARK 500 LYS A 239 99.06 -63.63 REMARK 500 TRP A 241 -85.17 -3.06 REMARK 500 ASN A 263 8.06 58.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-(MORPHOLIN-4-YLCARBONYL)-L-PHENYLALANYL-N-[(1R)-1- REMARK 630 (CYCLOHEXYLMETHYL)-3,3-DIFLUORO-2,2-DIHYDROXY-4-(METHYLAMINO)-4- REMARK 630 OXOBUTYL]-L-NORLEUCINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 2Z3 A 327 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: MOR PHE NLE CHF NME REMARK 630 DETAILS: NULL DBREF 2JXR A 0 326 UNP P07267 CARP_YEAST 77 405 SEQADV 2JXR ILE A 315 UNP P07267 LEU 394 ENGINEERED MUTATION SEQRES 1 A 329 GLY GLY HIS ASP VAL PRO LEU THR ASN TYR LEU ASN ALA SEQRES 2 A 329 GLN TYR TYR THR ASP ILE THR LEU GLY THR PRO PRO GLN SEQRES 3 A 329 ASN PHE LYS VAL ILE LEU ASP THR GLY SER SER ASN LEU SEQRES 4 A 329 TRP VAL PRO SER ASN GLU CYS GLY SER LEU ALA CYS PHE SEQRES 5 A 329 LEU HIS SER LYS TYR ASP HIS GLU ALA SER SER SER TYR SEQRES 6 A 329 LYS ALA ASN GLY THR GLU PHE ALA ILE GLN TYR GLY THR SEQRES 7 A 329 GLY SER LEU GLU GLY TYR ILE SER GLN ASP THR LEU SER SEQRES 8 A 329 ILE GLY ASP LEU THR ILE PRO LYS GLN ASP PHE ALA GLU SEQRES 9 A 329 ALA THR SER GLU PRO GLY LEU THR PHE ALA PHE GLY LYS SEQRES 10 A 329 PHE ASP GLY ILE LEU GLY LEU GLY TYR ASP THR ILE SER SEQRES 11 A 329 VAL ASP LYS VAL VAL PRO PRO PHE TYR ASN ALA ILE GLN SEQRES 12 A 329 GLN ASP LEU LEU ASP GLU LYS ARG PHE ALA PHE TYR LEU SEQRES 13 A 329 GLY ASP THR SER LYS ASP THR GLU ASN GLY GLY GLU ALA SEQRES 14 A 329 THR PHE GLY GLY ILE ASP GLU SER LYS PHE LYS GLY ASP SEQRES 15 A 329 ILE THR TRP LEU PRO VAL ARG ARG LYS ALA TYR TRP GLU SEQRES 16 A 329 VAL LYS PHE GLU GLY ILE GLY LEU GLY ASP GLU TYR ALA SEQRES 17 A 329 GLU LEU GLU SER HIS GLY ALA ALA ILE ASP THR GLY THR SEQRES 18 A 329 SER LEU ILE THR LEU PRO SER GLY LEU ALA GLU MET ILE SEQRES 19 A 329 ASN ALA GLU ILE GLY ALA LYS LYS GLY TRP THR GLY GLN SEQRES 20 A 329 TYR THR LEU ASP CYS ASN THR ARG ASP ASN LEU PRO ASP SEQRES 21 A 329 LEU ILE PHE ASN PHE ASN GLY TYR ASN PHE THR ILE GLY SEQRES 22 A 329 PRO TYR ASP TYR THR LEU GLU VAL SER GLY SER CYS ILE SEQRES 23 A 329 SER ALA ILE THR PRO MET ASP PHE PRO GLU PRO VAL GLY SEQRES 24 A 329 PRO LEU ALA ILE VAL GLY ASP ALA PHE LEU ARG LYS TYR SEQRES 25 A 329 TYR SER ILE TYR ASP ILE GLY ASN ASN ALA VAL GLY LEU SEQRES 26 A 329 ALA LYS ALA ILE MODRES 2JXR ASN A 67 ASN GLYCOSYLATION SITE MODRES 2JXR ASN A 266 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET BMA B 4 11 HET MAN B 5 11 HET 2Z3 A 327 46 HET NAG A 337 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM 2Z3 N-(MORPHOLIN-4-YLCARBONYL)-L-PHENYLALANYL-N-[(1R)-1- HETNAM 2 2Z3 (CYCLOHEXYLMETHYL)-3,3-DIFLUORO-2,2-DIHYDROXY-4- HETNAM 3 2Z3 (METHYLAMINO)-4-OXOBUTYL]-L-NORLEUCINAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN 2Z3 CP-81,282 FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 2 MAN C6 H12 O6 FORMUL 3 2Z3 C32 H49 F2 N5 O7 FORMUL 5 HOH *119(H2 O) HELIX 1 A SER A 47 HIS A 53 1 7 HELIX 2 H2 ASP A 57 SER A 61 1 5 HELIX 3 H3 SER A 129 VAL A 133 1 5 HELIX 4 H4 PRO A 135 GLN A 143 1 9 HELIX 5 H5 PRO A 224 ILE A 235 1 12 HELIX 6 H6 ASP A 248 LEU A 255 1 8 HELIX 7 H7 GLY A 302 LYS A 308 1 7 SHEET 1 A 6 HIS A 2 PRO A 5 0 SHEET 2 A 6 GLY A 163 PHE A 167 -1 N PHE A 167 O HIS A 2 SHEET 3 A 6 ARG A 150 LEU A 155 -1 N TYR A 154 O GLU A 164 SHEET 4 A 6 TYR A 309 ASP A 314 -1 N TYR A 313 O PHE A 151 SHEET 5 A 6 ALA A 319 LYS A 324 -1 N ALA A 323 O TYR A 310 SHEET 6 A 6 THR A 180 PRO A 183 -1 N LEU A 182 O VAL A 320 SHEET 1 B 4 THR A 7 TYR A 9 0 SHEET 2 B 4 GLN A 13 THR A 19 -1 N TYR A 15 O THR A 7 SHEET 3 B 4 ASN A 26 ASP A 32 -1 N VAL A 29 O THR A 16 SHEET 4 B 4 GLY A 119 GLY A 122 1 N GLY A 119 O ILE A 30 SHEET 1 C 4 TRP A 39 PRO A 41 0 SHEET 2 C 4 PHE A 101 SER A 106 1 N ALA A 102 O VAL A 40 SHEET 3 C 4 SER A 79 SER A 85 -1 N SER A 85 O PHE A 101 SHEET 4 C 4 GLU A 70 GLN A 74 -1 N ILE A 73 O LEU A 80 SHEET 1 D 2 LEU A 89 ILE A 91 0 SHEET 2 D 2 LEU A 94 ILE A 96 -1 N ILE A 96 O LEU A 89 SHEET 1 E 3 GLU A 191 LYS A 193 0 SHEET 2 E 3 GLY A 210 ILE A 214 -1 N ALA A 212 O VAL A 192 SHEET 3 E 3 LEU A 298 VAL A 301 1 N ALA A 299 O GLY A 210 SHEET 1 F 4 GLU A 202 GLU A 205 0 SHEET 2 F 4 PHE A 194 LEU A 199 -1 N LEU A 199 O GLU A 202 SHEET 3 F 4 LEU A 258 PHE A 262 -1 N ASN A 261 O GLU A 195 SHEET 4 F 4 TYR A 265 ILE A 269 -1 N ILE A 269 O LEU A 258 SHEET 1 G 2 ILE A 221 LEU A 223 0 SHEET 2 G 2 ILE A 286 PRO A 288 1 N THR A 287 O ILE A 221 SHEET 1 H 2 THR A 275 VAL A 278 0 SHEET 2 H 2 SER A 281 SER A 284 -1 N ILE A 283 O LEU A 276 SSBOND 1 CYS A 45 CYS A 50 1555 1555 1.96 SSBOND 2 CYS A 249 CYS A 282 1555 1555 1.96 LINK ND2 ASN A 67 C1 NAG B 1 1555 1555 1.40 LINK ND2 ASN A 266 C1 NAG A 337 1555 1555 1.49 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.41 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O3 BMA B 3 C1 BMA B 4 1555 1555 1.41 LINK O2 BMA B 4 C1 MAN B 5 1555 1555 1.46 CISPEP 1 THR A 22 PRO A 23 0 -1.06 CISPEP 2 GLU A 293 PRO A 294 0 7.77 CISPEP 3 GLY A 296 PRO A 297 0 -1.19 CRYST1 86.700 86.700 110.400 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011534 0.006659 0.000000 0.00000 SCALE2 0.000000 0.013318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009058 0.00000