HEADER METAL BINDING PROTEIN 12-DEC-07 2JYD TITLE STRUCTURE OF THE FIFTH ZINC FINGER OF MYELIN TRANSCRIPTION FACTOR 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: F5 DOMAIN OF MYELIN TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MYT1, NEURAL ZINC FINGER FACTOR 2, NZF-2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS ZINC-FINGER, MYT1, ALTERNATIVE SPLICING, DEVELOPMENTAL PROTEIN, KEYWDS 2 DIFFERENTIATION, DNA-BINDING, METAL-BINDING, NEUROGENESIS, NUCLEUS, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.GAMSJAEGER,M.K.SWANTON,F.J.KOBUS,E.LEHTOMAKI,J.A.LOWRY,A.H.KWAN, AUTHOR 2 J.M.MATTHEWS,J.P.MACKAY REVDAT 5 29-MAY-24 2JYD 1 REMARK REVDAT 4 16-MAR-22 2JYD 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JYD 1 VERSN REVDAT 2 01-JUL-08 2JYD 1 JRNL REVDAT 1 15-JAN-08 2JYD 0 JRNL AUTH R.GAMSJAEGER,M.K.SWANTON,F.J.KOBUS,E.LEHTOMAKI,J.A.LOWRY, JRNL AUTH 2 A.H.KWAN,J.M.MATTHEWS,J.P.MACKAY JRNL TITL STRUCTURAL AND BIOPHYSICAL ANALYSIS OF THE DNA BINDING JRNL TITL 2 PROPERTIES OF MYELIN TRANSCRIPTION FACTOR 1. JRNL REF J.BIOL.CHEM. V. 283 5158 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18073212 JRNL DOI 10.1074/JBC.M703772200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JYD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000100444. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM [U-13C; U-15N] F5, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 2D 1H-1H NOESY; REMARK 210 2D 1H-1H TOCSY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 4 -144.69 -94.14 REMARK 500 1 SER A 7 33.62 -85.26 REMARK 500 1 ALA A 8 -159.51 58.64 REMARK 500 1 ASP A 9 37.56 -92.78 REMARK 500 1 ARG A 31 22.39 -143.53 REMARK 500 1 ALA A 39 101.40 -55.75 REMARK 500 1 SER A 42 -65.24 68.94 REMARK 500 2 ASP A 9 46.89 -84.96 REMARK 500 2 LYS A 11 -156.34 -143.63 REMARK 500 2 ARG A 38 42.74 -99.87 REMARK 500 2 LYS A 41 -64.24 -138.11 REMARK 500 2 ARG A 45 79.15 -154.47 REMARK 500 3 LEU A 10 -61.46 -100.27 REMARK 500 3 THR A 24 -70.10 -67.75 REMARK 500 3 ARG A 31 -27.68 -148.62 REMARK 500 3 LEU A 33 46.26 -77.68 REMARK 500 3 ALA A 39 88.75 -69.75 REMARK 500 3 SER A 42 41.05 -106.83 REMARK 500 4 SER A 2 74.28 52.65 REMARK 500 4 ALA A 8 113.01 68.08 REMARK 500 4 LYS A 11 141.10 68.98 REMARK 500 4 TYR A 27 -164.72 -129.09 REMARK 500 4 HIS A 30 -159.79 -155.53 REMARK 500 4 ARG A 31 -16.51 -154.68 REMARK 500 4 LYS A 40 43.78 -75.49 REMARK 500 4 SER A 42 -62.20 70.84 REMARK 500 5 ALA A 4 -142.13 -153.01 REMARK 500 5 HIS A 6 -105.29 59.56 REMARK 500 5 LYS A 11 109.03 66.10 REMARK 500 5 ASP A 18 -36.62 -144.17 REMARK 500 5 HIS A 30 -157.38 -136.23 REMARK 500 5 ARG A 31 -29.90 -147.08 REMARK 500 5 LYS A 41 -49.38 -147.99 REMARK 500 6 ALA A 4 -133.65 54.56 REMARK 500 6 SER A 7 58.59 -97.45 REMARK 500 6 ASP A 9 55.20 -90.37 REMARK 500 6 LEU A 33 33.19 -78.27 REMARK 500 6 LYS A 40 98.84 -53.83 REMARK 500 7 MET A 3 -88.68 69.01 REMARK 500 7 ALA A 4 -86.79 64.53 REMARK 500 7 ALA A 5 78.16 -117.09 REMARK 500 7 ALA A 8 -151.73 -113.68 REMARK 500 7 ASP A 9 68.15 -104.54 REMARK 500 7 LYS A 11 -154.20 -99.46 REMARK 500 7 ARG A 31 12.81 -155.95 REMARK 500 7 SER A 34 -55.03 -135.19 REMARK 500 7 LYS A 41 -71.78 -119.18 REMARK 500 8 ASP A 9 43.03 -83.33 REMARK 500 8 LYS A 11 156.96 178.73 REMARK 500 8 LYS A 40 -133.46 47.54 REMARK 500 REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 47 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 12 SG REMARK 620 2 CYS A 17 SG 110.0 REMARK 620 3 HIS A 30 NE2 107.8 110.1 REMARK 620 4 CYS A 36 SG 109.2 110.8 108.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 47 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEE REF. 1 IN UNP DATABASE, MYT1_MOUSE. DBREF 2JYD A 3 46 UNP Q8CFC2 MYT1_MOUSE 837 880 SEQADV 2JYD GLY A 1 UNP Q8CFC2 EXPRESSION TAG SEQADV 2JYD SER A 2 UNP Q8CFC2 EXPRESSION TAG SEQADV 2JYD ARG A 45 UNP Q8CFC2 LYS 879 SEE REMARK 999 SEQRES 1 A 46 GLY SER MET ALA ALA HIS SER ALA ASP LEU LYS CYS PRO SEQRES 2 A 46 THR PRO GLY CYS ASP GLY SER GLY HIS ILE THR GLY ASN SEQRES 3 A 46 TYR ALA SER HIS ARG SER LEU SER GLY CYS PRO ARG ALA SEQRES 4 A 46 LYS LYS SER GLY LEU ARG VAL HET ZN A 47 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 SER A 7 LYS A 11 5 5 LINK SG CYS A 12 ZN ZN A 47 1555 1555 2.27 LINK SG CYS A 17 ZN ZN A 47 1555 1555 2.29 LINK NE2 HIS A 30 ZN ZN A 47 1555 1555 1.95 LINK SG CYS A 36 ZN ZN A 47 1555 1555 2.29 SITE 1 AC1 4 CYS A 12 CYS A 17 HIS A 30 CYS A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1