HEADER CYTOKINE 13-DEC-07 2JYE TITLE HUMAN GRANULIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRANULIN A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-32 KEYWDS GRANULIN A, EPITHELIN, HUMAN, STACK OF HAIRPINS, ALTERNATIVE KEYWDS 2 SPLICING, CYTOKINE, GLYCOPROTEIN, POLYMORPHISM, SECRETED EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.TOLKATCHEV,P.WANG,Z.CHEN,P.XU,F.NI REVDAT 4 06-NOV-24 2JYE 1 REMARK REVDAT 3 16-MAR-22 2JYE 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JYE 1 VERSN REVDAT 1 22-APR-08 2JYE 0 JRNL AUTH D.TOLKATCHEV,S.MALIK,A.VINOGRADOVA,P.WANG,Z.CHEN,P.XU, JRNL AUTH 2 H.P.BENNETT,A.BATEMAN,F.NI JRNL TITL STRUCTURE DISSECTION OF HUMAN PROGRANULIN IDENTIFIES JRNL TITL 2 WELL-FOLDED GRANULIN/EPITHELIN MODULES WITH UNIQUE JRNL TITL 3 FUNCTIONAL ACTIVITIES. JRNL REF PROTEIN SCI. V. 17 711 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18359860 JRNL DOI 10.1110/PS.073295308 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.0, ARIA 1.0 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JYE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000100445. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 288 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM SODIUM PHOSPHATE, 150 MM REMARK 210 SODIUM CHLORIDE, 0.2 MM EDTA, 90% REMARK 210 H2O/10% D2O; 10 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 0.2 MM EDTA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H TOCSY; REMARK 210 MJ-[1H,15N]-HSQC; 2D 1H-1H NOESY; REMARK 210 3D 1H-15N TOCSY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRPIPE, SYBYL, INSIGHT REMARK 210 II, MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 8 46.28 -92.75 REMARK 500 1 GLU A 9 -1.51 -164.93 REMARK 500 1 SER A 11 88.88 -151.35 REMARK 500 1 PRO A 13 -156.59 -75.48 REMARK 500 1 SER A 23 25.71 -73.24 REMARK 500 1 GLN A 33 -157.28 -178.01 REMARK 500 1 ALA A 34 95.21 -58.17 REMARK 500 1 GLU A 38 -167.97 57.17 REMARK 500 1 ASP A 39 -140.63 -92.29 REMARK 500 1 HIS A 40 -95.31 62.86 REMARK 500 1 PRO A 45 34.68 -69.13 REMARK 500 1 ALA A 46 161.40 66.29 REMARK 500 1 GLN A 53 14.05 57.46 REMARK 500 1 GLU A 58 82.32 -156.60 REMARK 500 1 GLN A 59 164.46 63.24 REMARK 500 1 LEU A 61 -82.15 -141.93 REMARK 500 1 ALA A 62 -10.67 -166.71 REMARK 500 1 ALA A 63 109.30 64.30 REMARK 500 1 ALA A 64 72.71 55.88 REMARK 500 2 MET A 2 40.57 -101.85 REMARK 500 2 ASP A 7 13.69 -173.70 REMARK 500 2 GLU A 9 -41.44 -147.53 REMARK 500 2 PRO A 13 -161.95 -69.84 REMARK 500 2 ALA A 25 -171.87 -174.39 REMARK 500 2 PRO A 30 39.20 -74.66 REMARK 500 2 PHE A 31 145.60 61.19 REMARK 500 2 THR A 32 40.93 -175.56 REMARK 500 2 ALA A 34 92.93 58.77 REMARK 500 2 CYS A 37 -79.36 -161.23 REMARK 500 2 ASP A 39 -56.19 -165.43 REMARK 500 2 HIS A 40 -48.86 -147.41 REMARK 500 2 HIS A 42 165.41 63.25 REMARK 500 2 PRO A 45 36.32 -73.62 REMARK 500 2 ALA A 46 127.22 67.02 REMARK 500 2 GLN A 53 13.56 58.45 REMARK 500 2 GLN A 59 103.80 -51.53 REMARK 500 2 LYS A 60 179.77 54.76 REMARK 500 2 ALA A 62 -62.09 -124.27 REMARK 500 2 ALA A 63 -158.73 -139.20 REMARK 500 2 ALA A 64 -95.92 59.57 REMARK 500 2 LEU A 65 170.60 62.57 REMARK 500 2 HIS A 67 32.33 -164.37 REMARK 500 3 MET A 2 84.22 55.55 REMARK 500 3 MET A 8 38.18 -87.18 REMARK 500 3 GLU A 9 -35.48 -161.06 REMARK 500 3 PRO A 13 -156.19 -80.61 REMARK 500 3 LEU A 21 -87.92 -105.31 REMARK 500 3 ALA A 34 -62.52 -157.97 REMARK 500 3 CYS A 36 -74.84 -147.99 REMARK 500 3 CYS A 37 -151.97 46.38 REMARK 500 REMARK 500 THIS ENTRY HAS 214 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QGM RELATED DB: PDB REMARK 900 CARP GRANULIN-1 FRAGMENT REMARK 900 RELATED ID: 1G26 RELATED DB: PDB REMARK 900 HUMAN GRANULIN A FRAGMENT REMARK 900 RELATED ID: 1FWO RELATED DB: PDB REMARK 900 ORYZAIN BETA FRAGMENT DBREF 2JYE A 3 59 UNP P28799 GRN_HUMAN 281 337 SEQADV 2JYE ALA A 1 UNP P28799 EXPRESSION TAG SEQADV 2JYE MET A 2 UNP P28799 EXPRESSION TAG SEQADV 2JYE LYS A 60 UNP P28799 EXPRESSION TAG SEQADV 2JYE LEU A 61 UNP P28799 EXPRESSION TAG SEQADV 2JYE ALA A 62 UNP P28799 EXPRESSION TAG SEQADV 2JYE ALA A 63 UNP P28799 EXPRESSION TAG SEQADV 2JYE ALA A 64 UNP P28799 EXPRESSION TAG SEQADV 2JYE LEU A 65 UNP P28799 EXPRESSION TAG SEQADV 2JYE GLU A 66 UNP P28799 EXPRESSION TAG SEQADV 2JYE HIS A 67 UNP P28799 EXPRESSION TAG SEQADV 2JYE HIS A 68 UNP P28799 EXPRESSION TAG SEQADV 2JYE HIS A 69 UNP P28799 EXPRESSION TAG SEQADV 2JYE HIS A 70 UNP P28799 EXPRESSION TAG SEQADV 2JYE HIS A 71 UNP P28799 EXPRESSION TAG SEQADV 2JYE HIS A 72 UNP P28799 EXPRESSION TAG SEQRES 1 A 72 ALA MET ASP VAL LYS CYS ASP MET GLU VAL SER CYS PRO SEQRES 2 A 72 ASP GLY TYR THR CYS CYS ARG LEU GLN SER GLY ALA TRP SEQRES 3 A 72 GLY CYS CYS PRO PHE THR GLN ALA VAL CYS CYS GLU ASP SEQRES 4 A 72 HIS ILE HIS CYS CYS PRO ALA GLY PHE THR CYS ASP THR SEQRES 5 A 72 GLN LYS GLY THR CYS GLU GLN LYS LEU ALA ALA ALA LEU SEQRES 6 A 72 GLU HIS HIS HIS HIS HIS HIS SHEET 1 A 2 TYR A 16 ARG A 20 0 SHEET 2 A 2 TRP A 26 PRO A 30 -1 O GLY A 27 N CYS A 19 SHEET 1 B 2 CYS A 50 ASP A 51 0 SHEET 2 B 2 THR A 56 CYS A 57 -1 N THR A 56 O ASP A 51 SSBOND 1 CYS A 6 CYS A 18 1555 1555 2.03 SSBOND 2 CYS A 12 CYS A 28 1555 1555 2.03 SSBOND 3 CYS A 19 CYS A 36 1555 1555 2.03 SSBOND 4 CYS A 29 CYS A 43 1555 1555 2.03 SSBOND 5 CYS A 37 CYS A 50 1555 1555 2.03 SSBOND 6 CYS A 44 CYS A 57 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1