HEADER HYDROLASE 19-DEC-07 2JYS TITLE SOLUTION STRUCTURE OF SIMIAN FOAMY VIRUS (MAC) PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE/REVERSE TRANSCRIPTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-101; COMPND 5 EC: 3.4.23.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN FOAMY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: SFVMAC; SOURCE 4 ORGANISM_TAXID: 338478; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28C KEYWDS RETROVIRAL PROTEASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.J.HARTL,B.M.WOEHRL,P.ROESCH,K.SCHWEIMER REVDAT 4 16-MAR-22 2JYS 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JYS 1 VERSN REVDAT 2 12-AUG-08 2JYS 1 JRNL REVDAT 1 03-JUN-08 2JYS 0 JRNL AUTH M.J.HARTL,B.M.WOEHRL,P.ROESCH,K.SCHWEIMER JRNL TITL THE SOLUTION STRUCTURE OF THE SIMIAN FOAMY VIRUS PROTEASE JRNL TITL 2 REVEALS A MONOMERIC PROTEIN JRNL REF J.MOL.BIOL. V. 381 141 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18597783 JRNL DOI 10.1016/J.JMB.2008.05.064 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR-NIH, X-PLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 -NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JYS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000100459. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 50MM SODIUM PHOSPHATE, REMARK 210 100MM SODIUM CHLORIDE, 0.5MM DTT, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 99 REMARK 465 LEU A 100 REMARK 465 THR A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 60 H VAL A 75 1.56 REMARK 500 O CYS A 31 H LEU A 84 1.58 REMARK 500 O ILE A 14 H THR A 17 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 40 -169.23 -108.78 REMARK 500 1 TYR A 82 -159.91 -145.46 REMARK 500 1 VAL A 90 70.00 -109.31 REMARK 500 2 VAL A 90 79.99 -111.79 REMARK 500 2 MET A 94 169.93 67.75 REMARK 500 2 LYS A 96 -56.20 169.76 REMARK 500 3 THR A 50 -169.76 -111.31 REMARK 500 3 VAL A 90 72.85 -113.93 REMARK 500 3 LYS A 96 73.42 52.33 REMARK 500 4 GLU A 38 92.02 -56.83 REMARK 500 4 GLU A 40 -178.77 -59.28 REMARK 500 4 TYR A 82 -156.17 -141.03 REMARK 500 5 TYR A 82 -156.82 -139.35 REMARK 500 6 TYR A 82 -157.71 -139.49 REMARK 500 6 VAL A 90 69.28 -112.10 REMARK 500 7 TYR A 80 -178.94 -64.73 REMARK 500 7 TYR A 82 -156.99 -142.28 REMARK 500 8 VAL A 90 74.25 -119.67 REMARK 500 9 VAL A 90 76.56 -115.84 REMARK 500 10 TYR A 80 -178.99 -60.52 REMARK 500 10 TYR A 82 -152.35 -153.61 REMARK 500 10 VAL A 90 74.92 -118.81 REMARK 500 12 ASP A 39 38.99 -96.22 REMARK 500 12 TYR A 82 -154.83 -142.48 REMARK 500 12 VAL A 90 73.70 -110.90 REMARK 500 13 ASP A 39 40.06 -94.61 REMARK 500 13 GLU A 40 135.21 -39.00 REMARK 500 13 ALA A 73 -169.70 -160.59 REMARK 500 13 TYR A 82 -157.80 -136.34 REMARK 500 14 ASP A 39 40.21 -97.08 REMARK 500 14 TYR A 82 -156.27 -142.27 REMARK 500 15 ASP A 39 36.89 -97.45 REMARK 500 15 GLU A 40 131.07 -39.38 REMARK 500 15 ALA A 73 -169.65 -160.37 REMARK 500 15 TYR A 82 -159.38 -139.81 REMARK 500 15 LYS A 95 -94.17 45.12 REMARK 500 15 LYS A 96 60.89 64.69 REMARK 500 16 ASP A 39 37.16 -99.41 REMARK 500 16 GLU A 40 134.11 -38.69 REMARK 500 16 TYR A 82 -159.32 -148.14 REMARK 500 16 VAL A 90 71.68 -119.25 REMARK 500 17 ASP A 39 40.15 -97.05 REMARK 500 17 TYR A 82 -157.89 -139.22 REMARK 500 18 THR A 50 -168.72 -121.18 REMARK 500 18 TYR A 82 -153.97 -145.08 REMARK 500 18 VAL A 90 73.95 -116.06 REMARK 500 19 VAL A 90 76.39 -119.52 REMARK 500 20 ASP A 39 37.67 -98.52 REMARK 500 20 GLU A 40 132.70 -38.70 REMARK 500 20 VAL A 90 69.64 -108.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 41 0.32 SIDE CHAIN REMARK 500 1 ARG A 69 0.13 SIDE CHAIN REMARK 500 2 ARG A 41 0.24 SIDE CHAIN REMARK 500 2 ARG A 69 0.32 SIDE CHAIN REMARK 500 3 ARG A 41 0.23 SIDE CHAIN REMARK 500 3 ARG A 69 0.32 SIDE CHAIN REMARK 500 4 ARG A 41 0.24 SIDE CHAIN REMARK 500 4 ARG A 69 0.32 SIDE CHAIN REMARK 500 5 ARG A 41 0.29 SIDE CHAIN REMARK 500 5 ARG A 69 0.21 SIDE CHAIN REMARK 500 6 ARG A 41 0.32 SIDE CHAIN REMARK 500 6 ARG A 69 0.32 SIDE CHAIN REMARK 500 7 ARG A 41 0.30 SIDE CHAIN REMARK 500 7 ARG A 69 0.32 SIDE CHAIN REMARK 500 8 ARG A 41 0.23 SIDE CHAIN REMARK 500 8 ARG A 69 0.17 SIDE CHAIN REMARK 500 9 ARG A 41 0.26 SIDE CHAIN REMARK 500 9 ARG A 69 0.19 SIDE CHAIN REMARK 500 10 ARG A 41 0.21 SIDE CHAIN REMARK 500 10 ARG A 69 0.28 SIDE CHAIN REMARK 500 11 ARG A 41 0.21 SIDE CHAIN REMARK 500 11 ARG A 69 0.28 SIDE CHAIN REMARK 500 12 ARG A 41 0.27 SIDE CHAIN REMARK 500 13 ARG A 41 0.20 SIDE CHAIN REMARK 500 13 ARG A 69 0.28 SIDE CHAIN REMARK 500 14 ARG A 41 0.25 SIDE CHAIN REMARK 500 14 ARG A 69 0.32 SIDE CHAIN REMARK 500 15 ARG A 41 0.16 SIDE CHAIN REMARK 500 15 ARG A 69 0.08 SIDE CHAIN REMARK 500 16 ARG A 41 0.27 SIDE CHAIN REMARK 500 16 ARG A 69 0.21 SIDE CHAIN REMARK 500 17 ARG A 41 0.20 SIDE CHAIN REMARK 500 17 ARG A 69 0.29 SIDE CHAIN REMARK 500 18 ARG A 41 0.17 SIDE CHAIN REMARK 500 18 ARG A 69 0.28 SIDE CHAIN REMARK 500 19 ARG A 41 0.31 SIDE CHAIN REMARK 500 19 ARG A 69 0.32 SIDE CHAIN REMARK 500 20 ARG A 41 0.19 SIDE CHAIN REMARK 500 20 ARG A 69 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15403 RELATED DB: BMRB DBREF 2JYS A 1 101 UNP P23074 POL_SFV1 1 101 SEQADV 2JYS HIS A 102 UNP P23074 EXPRESSION TAG SEQADV 2JYS HIS A 103 UNP P23074 EXPRESSION TAG SEQADV 2JYS HIS A 104 UNP P23074 EXPRESSION TAG SEQADV 2JYS HIS A 105 UNP P23074 EXPRESSION TAG SEQADV 2JYS HIS A 106 UNP P23074 EXPRESSION TAG SEQADV 2JYS HIS A 107 UNP P23074 EXPRESSION TAG SEQRES 1 A 107 MET ASP PRO LEU GLN LEU LEU GLN PRO LEU GLU ALA GLU SEQRES 2 A 107 ILE LYS GLY THR LYS LEU LYS ALA HIS TRP ASP SER GLY SEQRES 3 A 107 ALA THR ILE THR CYS VAL PRO GLU ALA PHE LEU GLU ASP SEQRES 4 A 107 GLU ARG PRO ILE GLN THR MET LEU ILE LYS THR ILE HIS SEQRES 5 A 107 GLY GLU LYS GLN GLN ASP VAL TYR TYR LEU THR PHE LYS SEQRES 6 A 107 VAL GLN GLY ARG LYS VAL GLU ALA GLU VAL LEU ALA SER SEQRES 7 A 107 PRO TYR ASP TYR ILE LEU LEU ASN PRO SER ASP VAL PRO SEQRES 8 A 107 TRP LEU MET LYS LYS PRO LEU GLN LEU THR HIS HIS HIS SEQRES 9 A 107 HIS HIS HIS HELIX 1 1 ALA A 35 LEU A 37 5 3 HELIX 2 2 VAL A 90 LYS A 95 1 6 SHEET 1 A 8 GLN A 44 LYS A 49 0 SHEET 2 A 8 GLU A 54 VAL A 66 -1 O LYS A 55 N ILE A 48 SHEET 3 A 8 LYS A 70 SER A 78 -1 O VAL A 75 N TYR A 60 SHEET 4 A 8 THR A 30 PRO A 33 1 N VAL A 32 O LEU A 76 SHEET 5 A 8 ILE A 83 LEU A 85 -1 O LEU A 84 N CYS A 31 SHEET 6 A 8 THR A 17 TRP A 23 1 N HIS A 22 O LEU A 85 SHEET 7 A 8 LEU A 10 ILE A 14 -1 N ILE A 14 O THR A 17 SHEET 8 A 8 GLU A 54 VAL A 66 -1 O LYS A 65 N GLU A 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1