HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-DEC-07 2JZ4 TITLE PUTATIVE 32 KDA MYROSINASE BINDING PROTEIN AT3G16450.1 FROM TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: JASMONATE INDUCIBLE PROTEIN ISOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AT3G16450/MDC8_8, JASMONATE INDUCIBLE PROTEIN, MYROSINASE COMPND 5 BINDING PROTEIN-LIKE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G16450.1, T02O04.5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PIVEX2.3D; SOURCE 10 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS MYROSINASE BINDING PROTEIN, AT3G16450.1, SAIL, STEREO-ARRAY ISOTOPE KEYWDS 2 LABELING, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TAKEDA,N.SUGIMORI,T.TORIZAWA,T.TERAUCHI,A.M.ONO,H.YAGI,Y.YAMAGUCHI, AUTHOR 2 K.KATO,T.IKEYA,P.GUNTERT,D.J.ACETI,J.L.MARKLEY,M.KAINOSHO,CENTER FOR AUTHOR 3 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 7 08-MAY-24 2JZ4 1 REMARK REVDAT 6 14-JUN-23 2JZ4 1 REMARK REVDAT 5 19-FEB-20 2JZ4 1 REMARK REVDAT 4 09-JUN-09 2JZ4 1 REVDAT REVDAT 3 24-FEB-09 2JZ4 1 VERSN REVDAT 2 02-DEC-08 2JZ4 1 JRNL REVDAT 1 19-FEB-08 2JZ4 0 JRNL AUTH M.TAKEDA,N.SUGIMORI,T.TORIZAWA,T.TERAUCHI,A.M.ONO,H.YAGI, JRNL AUTH 2 Y.YAMAGUCHI,K.KATO,T.IKEYA,J.JEE,P.GUNTERT,D.J.ACETI, JRNL AUTH 3 J.L.MARKLEY,M.KAINOSHO JRNL TITL STRUCTURE OF THE PUTATIVE 32 KDA MYROSINASE-BINDING PROTEIN JRNL TITL 2 FROM ARABIDOPSIS (AT3G16450.1) DETERMINED BY SAIL-NMR. JRNL REF FEBS J. V. 275 5873 2008 JRNL REFN ISSN 1742-464X JRNL PMID 19021763 JRNL DOI 10.1111/J.1742-4658.2008.06717.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.SUGIMORI,T.TORIZAWA,D.J.ACETI,S.THAO,J.L.MARKLEY, REMARK 1 AUTH 2 M.KAINOSHO REMARK 1 TITL 1H, 13C AND 15N BACKBONE ASSIGNMENT OF A 32 KDA HYPOTHETICAL REMARK 1 TITL 2 PROTEIN FROM ARABIDOPSIS THALIANA, AT3G16450.1 REMARK 1 REF J.BIOMOL.NMR V. 30 357 2004 REMARK 1 REFN ISSN 0925-2738 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2, OPALP 1.4 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), (OPALP) REMARK 3 KORADI, BILLETER, GUNTERT (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JZ4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100471. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300.6 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2 MM STEREO-ARRAY ISOTOPE REMARK 210 LABELING (SAIL) AT3G16450.1, 100 REMARK 210 MM POTASSIUM CHLORIDE, 20 MM [U- REMARK 210 99% 2H] BIS-TRIS-D19, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCA; 3D HNCO; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D CBCA(CO)NH; 3D REMARK 210 H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6 ARG A 131 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 14 5.83 -171.70 REMARK 500 1 TRP A 15 -173.10 -65.35 REMARK 500 1 ASP A 16 109.19 -47.68 REMARK 500 1 ARG A 24 -42.94 -140.07 REMARK 500 1 ASP A 45 5.29 -43.12 REMARK 500 1 SER A 46 -67.96 -151.00 REMARK 500 1 PHE A 84 104.26 -59.00 REMARK 500 1 TYR A 107 14.59 -67.70 REMARK 500 1 LEU A 156 -166.66 -113.65 REMARK 500 1 ALA A 158 -159.47 -108.84 REMARK 500 1 ASP A 168 107.63 -58.03 REMARK 500 1 ALA A 171 146.81 -170.89 REMARK 500 1 ALA A 198 -4.95 -140.73 REMARK 500 1 LYS A 253 -13.25 59.80 REMARK 500 1 VAL A 277 -3.86 -141.13 REMARK 500 1 SER A 284 -34.08 -131.41 REMARK 500 1 GLU A 285 -56.74 -144.21 REMARK 500 2 ASP A 21 -11.30 -147.17 REMARK 500 2 ARG A 24 -52.27 -131.18 REMARK 500 2 LEU A 125 97.05 -62.12 REMARK 500 2 ARG A 131 50.71 -142.45 REMARK 500 2 PRO A 149 -169.27 -73.01 REMARK 500 2 PRO A 152 -166.03 -69.01 REMARK 500 2 LYS A 191 134.00 -174.13 REMARK 500 2 PHE A 237 76.80 -108.80 REMARK 500 2 LYS A 253 -19.00 58.20 REMARK 500 2 SER A 284 -90.66 -127.35 REMARK 500 3 TRP A 15 -70.28 -86.48 REMARK 500 3 ASP A 16 17.52 56.32 REMARK 500 3 ARG A 24 -71.18 -104.26 REMARK 500 3 ASP A 87 24.66 -65.41 REMARK 500 3 THR A 146 87.90 -156.32 REMARK 500 3 LEU A 156 -169.65 -77.49 REMARK 500 3 ASP A 162 48.29 -90.19 REMARK 500 3 LYS A 253 -26.42 72.95 REMARK 500 3 GLU A 285 -60.98 -165.46 REMARK 500 3 THR A 298 52.85 -143.41 REMARK 500 4 ASP A 17 -64.55 -133.87 REMARK 500 4 VAL A 35 96.59 -62.58 REMARK 500 4 ASP A 45 27.28 47.50 REMARK 500 4 SER A 46 -159.34 -162.76 REMARK 500 4 LYS A 114 163.64 176.34 REMARK 500 4 LEU A 139 91.51 -161.83 REMARK 500 4 TRP A 167 38.63 -142.55 REMARK 500 4 ASP A 168 104.63 -51.30 REMARK 500 4 LYS A 176 -53.78 -124.55 REMARK 500 4 GLU A 205 113.40 -39.00 REMARK 500 4 LYS A 253 -16.49 66.15 REMARK 500 4 ALA A 257 165.88 70.12 REMARK 500 4 SER A 284 70.58 -174.26 REMARK 500 REMARK 500 THIS ENTRY HAS 294 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 107 0.07 SIDE CHAIN REMARK 500 1 ARG A 248 0.09 SIDE CHAIN REMARK 500 2 TYR A 179 0.13 SIDE CHAIN REMARK 500 3 TYR A 142 0.08 SIDE CHAIN REMARK 500 3 TYR A 233 0.07 SIDE CHAIN REMARK 500 4 TYR A 42 0.07 SIDE CHAIN REMARK 500 4 TYR A 72 0.07 SIDE CHAIN REMARK 500 4 TYR A 80 0.07 SIDE CHAIN REMARK 500 5 TYR A 142 0.07 SIDE CHAIN REMARK 500 8 TYR A 72 0.14 SIDE CHAIN REMARK 500 8 TYR A 172 0.08 SIDE CHAIN REMARK 500 8 TYR A 221 0.07 SIDE CHAIN REMARK 500 9 TYR A 80 0.06 SIDE CHAIN REMARK 500 12 ARG A 131 0.10 SIDE CHAIN REMARK 500 12 TYR A 142 0.09 SIDE CHAIN REMARK 500 13 TYR A 172 0.07 SIDE CHAIN REMARK 500 13 TYR A 225 0.08 SIDE CHAIN REMARK 500 15 ARG A 131 0.10 SIDE CHAIN REMARK 500 16 TYR A 221 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.12798 RELATED DB: TARGETDB REMARK 900 AT3G16450.1 REMARK 900 RELATED ID: 15607 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS OF THE SAIL PROTEIN DBREF 2JZ4 A 1 299 UNP O04311 O04311_ARATH 2 300 SEQRES 1 A 299 ALA GLN LYS VAL GLU ALA GLY GLY GLY ALA GLY GLY ALA SEQRES 2 A 299 SER TRP ASP ASP GLY VAL HIS ASP GLY VAL ARG LYS VAL SEQRES 3 A 299 HIS VAL GLY GLN GLY GLN ASP GLY VAL SER SER ILE ASN SEQRES 4 A 299 VAL VAL TYR ALA LYS ASP SER GLN ASP VAL GLU GLY GLY SEQRES 5 A 299 GLU HIS GLY LYS LYS THR LEU LEU GLY PHE GLU THR PHE SEQRES 6 A 299 GLU VAL ASP ALA ASP ASP TYR ILE VAL ALA VAL GLN VAL SEQRES 7 A 299 THR TYR ASP ASN VAL PHE GLY GLN ASP SER ASP ILE ILE SEQRES 8 A 299 THR SER ILE THR PHE ASN THR PHE LYS GLY LYS THR SER SEQRES 9 A 299 PRO PRO TYR GLY LEU GLU THR GLN LYS LYS PHE VAL LEU SEQRES 10 A 299 LYS ASP LYS ASN GLY GLY LYS LEU VAL GLY PHE HIS GLY SEQRES 11 A 299 ARG ALA GLY GLU ALA LEU TYR ALA LEU GLY ALA TYR PHE SEQRES 12 A 299 ALA THR THR THR THR PRO VAL THR PRO ALA LYS LYS LEU SEQRES 13 A 299 SER ALA ILE GLY GLY ASP GLU GLY THR ALA TRP ASP ASP SEQRES 14 A 299 GLY ALA TYR ASP GLY VAL LYS LYS VAL TYR VAL GLY GLN SEQRES 15 A 299 GLY GLN ASP GLY ILE SER ALA VAL LYS PHE GLU TYR ASN SEQRES 16 A 299 LYS GLY ALA GLU ASN ILE VAL GLY GLY GLU HIS GLY LYS SEQRES 17 A 299 PRO THR LEU LEU GLY PHE GLU GLU PHE GLU ILE ASP TYR SEQRES 18 A 299 PRO SER GLU TYR ILE THR ALA VAL GLU GLY THR TYR ASP SEQRES 19 A 299 LYS ILE PHE GLY SER ASP GLY LEU ILE ILE THR MET LEU SEQRES 20 A 299 ARG PHE LYS THR ASN LYS GLN THR SER ALA PRO PHE GLY SEQRES 21 A 299 LEU GLU ALA GLY THR ALA PHE GLU LEU LYS GLU GLU GLY SEQRES 22 A 299 HIS LYS ILE VAL GLY PHE HIS GLY LYS ALA SER GLU LEU SEQRES 23 A 299 LEU HIS GLN PHE GLY VAL HIS VAL MET PRO LEU THR ASN SHEET 1 A 4 GLU A 53 GLY A 55 0 SHEET 2 A 4 VAL A 35 VAL A 40 -1 N ILE A 38 O HIS A 54 SHEET 3 A 4 LYS A 25 GLN A 30 -1 N GLY A 29 O SER A 37 SHEET 4 A 4 PHE A 65 GLU A 66 -1 O PHE A 65 N VAL A 26 SHEET 1 B 2 TYR A 42 ALA A 43 0 SHEET 2 B 2 ASP A 48 VAL A 49 -1 O VAL A 49 N TYR A 42 SHEET 1 C 3 ILE A 90 THR A 98 0 SHEET 2 C 3 ILE A 73 ASP A 81 -1 N THR A 79 O SER A 93 SHEET 3 C 3 LYS A 114 LYS A 118 -1 O PHE A 115 N VAL A 78 SHEET 1 D 3 ILE A 187 GLU A 193 0 SHEET 2 D 3 LYS A 177 GLN A 182 -1 N LYS A 177 O GLU A 193 SHEET 3 D 3 GLU A 215 PHE A 217 -1 O GLU A 215 N VAL A 180 SHEET 1 E 4 PHE A 259 GLY A 260 0 SHEET 2 E 4 LEU A 242 PHE A 249 -1 N LEU A 247 O PHE A 259 SHEET 3 E 4 VAL A 229 LYS A 235 -1 N GLU A 230 O ARG A 248 SHEET 4 E 4 THR A 265 LEU A 269 -1 O PHE A 267 N GLY A 231 SHEET 1 F 2 HIS A 274 LYS A 275 0 SHEET 2 F 2 MET A 295 PRO A 296 -1 O MET A 295 N LYS A 275 SHEET 1 G 2 PHE A 279 ALA A 283 0 SHEET 2 G 2 LEU A 287 VAL A 292 -1 O GLN A 289 N LYS A 282 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1