HEADER RIBOSOMAL PROTEIN 28-DEC-07 2JZ6 TITLE SOLUTION STRUCTURE OF 50S RIBOSOMAL PROTEIN L28 FROM THERMOTOGA TITLE 2 MARITIMA. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VR97 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L28; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8 / DSM 3109 / JCM 10099; SOURCE 5 ATCC: 43589; SOURCE 6 GENE: RPM, BTM_0255; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS NESG, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.WU,K.K.SINGARAPU,V.GUIDO,A.YEE,D.SUKUMARAN,C.H.ARROWSMITH, AUTHOR 2 T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2JZ6 1 REMARK REVDAT 3 19-FEB-20 2JZ6 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JZ6 1 VERSN REVDAT 1 29-JAN-08 2JZ6 0 JRNL AUTH Y.WU,K.K.SINGARAPU,V.GUIDO,A.YEE,D.SUKUMARAN,C.H.ARROWSMITH, JRNL AUTH 2 T.SZYPERSKI JRNL TITL SOLUTION STRUCTURE OF 50S RIBOSOMAL PROTEIN L28 FROM JRNL TITL 2 THERMOTOGA MARITIMA. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET VR97. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JZ6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100473. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4,3D, GFT HNNCABCA; 4,3D, GFT REMARK 210 CABCACONNH; 4,3D, GFT HCCH COSY; REMARK 210 3D, 15N-13C RESOLVEDSIMULTANEOUS REMARK 210 NOESY; 3D HNCO; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN, XEASY, NMRPIPE, REMARK 210 AUTOSTRUCTURE, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 24 OD1 ASP A 27 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 28 28.79 43.92 REMARK 500 1 GLU A 31 71.57 -101.83 REMARK 500 1 TRP A 33 -169.73 61.49 REMARK 500 1 PRO A 36 98.27 -57.07 REMARK 500 1 VAL A 69 91.79 67.09 REMARK 500 2 MET A 6 85.84 55.77 REMARK 500 2 LYS A 8 77.18 57.61 REMARK 500 2 VAL A 12 -71.25 -81.90 REMARK 500 2 ARG A 18 13.94 -149.53 REMARK 500 2 VAL A 23 85.60 43.69 REMARK 500 2 HIS A 25 28.84 -160.20 REMARK 500 2 ASP A 27 134.38 69.05 REMARK 500 2 TRP A 33 78.07 -102.72 REMARK 500 2 PHE A 34 98.36 -160.11 REMARK 500 2 LYS A 67 30.80 -94.40 REMARK 500 2 VAL A 69 100.83 63.56 REMARK 500 3 LYS A 29 -178.81 69.31 REMARK 500 3 LEU A 38 106.80 68.46 REMARK 500 3 LYS A 67 -164.74 45.47 REMARK 500 3 TYR A 68 14.59 -142.06 REMARK 500 4 ALA A 7 73.54 61.32 REMARK 500 4 SER A 19 -155.67 63.69 REMARK 500 4 SER A 24 -173.21 64.63 REMARK 500 4 SER A 26 104.75 -59.32 REMARK 500 4 LYS A 29 96.65 74.69 REMARK 500 4 SER A 30 38.27 -82.07 REMARK 500 4 ARG A 32 86.06 63.05 REMARK 500 4 PHE A 34 147.39 -173.93 REMARK 500 4 PRO A 36 100.26 -51.49 REMARK 500 4 ASN A 37 -8.10 71.48 REMARK 500 4 LYS A 64 30.59 -89.25 REMARK 500 4 VAL A 69 -60.27 52.13 REMARK 500 4 VAL A 72 -84.08 44.79 REMARK 500 5 MET A 6 95.85 66.88 REMARK 500 5 ALA A 7 -79.65 -87.39 REMARK 500 5 VAL A 12 -65.88 -92.58 REMARK 500 5 ASN A 21 -65.07 72.20 REMARK 500 5 THR A 22 102.06 66.46 REMARK 500 5 SER A 24 146.91 70.19 REMARK 500 5 SER A 26 -30.02 -160.27 REMARK 500 5 ASP A 27 91.08 67.27 REMARK 500 5 GLU A 31 -85.57 57.70 REMARK 500 6 MET A 6 -85.51 -112.55 REMARK 500 6 THR A 22 102.60 71.48 REMARK 500 6 LYS A 29 -56.06 -159.49 REMARK 500 6 ARG A 35 74.23 64.40 REMARK 500 6 TYR A 68 52.99 -94.13 REMARK 500 6 VAL A 69 91.24 61.96 REMARK 500 7 LYS A 8 36.69 -168.20 REMARK 500 7 VAL A 12 -70.09 -98.75 REMARK 500 REMARK 500 THIS ENTRY HAS 203 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: VR97 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15609 RELATED DB: BMRB DBREF 2JZ6 A 6 75 UNP Q9WY96 RL28_THEMA 1 70 SEQADV 2JZ6 GLN A 1 UNP Q9WY96 EXPRESSION TAG SEQADV 2JZ6 GLY A 2 UNP Q9WY96 EXPRESSION TAG SEQADV 2JZ6 HIS A 3 UNP Q9WY96 EXPRESSION TAG SEQADV 2JZ6 MET A 4 UNP Q9WY96 EXPRESSION TAG SEQADV 2JZ6 ILE A 5 UNP Q9WY96 EXPRESSION TAG SEQADV 2JZ6 GLU A 31 UNP Q9WY96 GLY 26 CONFLICT SEQADV 2JZ6 GLY A 76 UNP Q9WY96 EXPRESSION TAG SEQADV 2JZ6 SER A 77 UNP Q9WY96 EXPRESSION TAG SEQRES 1 A 77 GLN GLY HIS MET ILE MET ALA LYS ARG CYS GLU VAL CYS SEQRES 2 A 77 GLY LYS ALA PRO ARG SER GLY ASN THR VAL SER HIS SER SEQRES 3 A 77 ASP LYS LYS SER GLU ARG TRP PHE ARG PRO ASN LEU GLN SEQRES 4 A 77 LYS VAL ARG VAL VAL LEU PRO ASP GLY THR ILE LYS ARG SEQRES 5 A 77 MET ARG VAL CYS THR SER CYS LEU LYS SER GLY LYS VAL SEQRES 6 A 77 LYS LYS TYR VAL GLY GLN VAL SER GLU VAL GLY SER HELIX 1 1 THR A 57 GLY A 63 1 7 SHEET 1 A 2 LEU A 38 LEU A 45 0 SHEET 2 A 2 THR A 49 CYS A 56 -1 O THR A 49 N LEU A 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1