HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-DEC-07 2JZ8 TITLE SOLUTION NMR STRUCTURE OF BH09830 FROM BARTONELLA HENSELAE MODELED TITLE 2 WITH ONE ZN+2 BOUND. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 BNR55 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN BH09830; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA HENSELAE STR. HOUSTON-1; SOURCE 3 ORGANISM_TAXID: 283166; SOURCE 4 STRAIN: HOUSTON 1; SOURCE 5 ATCC: 49882; SOURCE 6 GENE: BH09830; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ZINC BINDING, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.DING,J.R.CORT,D.WANG,H.JANJUA,L.OWENS,R.XIAO,J.LIU,M.C.BARAN, AUTHOR 2 G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 29-MAY-24 2JZ8 1 REMARK REVDAT 3 16-MAR-22 2JZ8 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JZ8 1 VERSN REVDAT 1 15-JAN-08 2JZ8 0 JRNL AUTH K.DING,J.R.CORT,D.WANG,H.JANJUA,L.OWENS,R.XIAO,J.LIU, JRNL AUTH 2 M.C.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF BH09830 FROM BARTONELLA HENSELAE JRNL TITL 2 MODELED WITH ONE ZN+2 BOUND. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DGSA USING XPLOR NIH AND THEN FOLLOWED REMARK 3 BY CNS WATER REFINEMENT REMARK 4 REMARK 4 2JZ8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100475. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 BH09830 MONOMER, 50 UM DSS, 0.02 REMARK 210 % NAN3, 100 MM DTT, 5 MM CACL2, REMARK 210 100 MM NACL, 20 MM MES, 90% H2O/ REMARK 210 10% D2O; 0.8 MM [U-100% 13C; U- REMARK 210 100% 15N] BH09830 MONOMER, 50 UM REMARK 210 DSS, 0.02 % NAN3, 100 MM DTT, 5 REMARK 210 MM CACL2, 100 MM NACL, 20 MM MES, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C AROM HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HNHA; 3D C(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D 1H-13C AROM REMARK 210 NOESY; 4D HCCH NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR-NIH 2.15.0, AUTOSTRUCTURE REMARK 210 2.1.1, SPARKY 3.1, NMRPIPE LINUX9 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST NOE REMARK 210 AND BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 61 HG SER A 63 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 4 72.76 53.91 REMARK 500 1 ALA A 30 -86.62 67.00 REMARK 500 1 HIS A 36 174.39 76.04 REMARK 500 1 HIS A 38 -78.43 -160.24 REMARK 500 1 MET A 43 -70.84 -97.49 REMARK 500 1 CYS A 54 -46.43 -157.87 REMARK 500 1 SER A 55 85.37 61.54 REMARK 500 1 THR A 56 47.71 -168.88 REMARK 500 1 LEU A 57 107.01 -53.17 REMARK 500 1 SER A 65 -168.75 -122.81 REMARK 500 1 THR A 69 -148.22 -161.92 REMARK 500 1 THR A 72 137.74 76.53 REMARK 500 1 HIS A 84 40.80 -86.86 REMARK 500 1 HIS A 85 80.55 58.32 REMARK 500 2 PRO A 7 99.65 -60.42 REMARK 500 2 TYR A 15 113.30 65.90 REMARK 500 2 PRO A 37 -144.98 -58.80 REMARK 500 2 TYR A 53 79.51 -101.74 REMARK 500 2 CYS A 54 -46.87 164.49 REMARK 500 2 SER A 55 -151.28 77.14 REMARK 500 2 THR A 56 77.96 83.00 REMARK 500 2 TYR A 58 99.69 -69.50 REMARK 500 2 LEU A 64 -166.19 -79.55 REMARK 500 2 THR A 69 -141.72 -174.50 REMARK 500 2 PRO A 71 168.97 -45.21 REMARK 500 2 THR A 72 -57.91 76.94 REMARK 500 2 CYS A 74 37.67 -88.23 REMARK 500 2 GLU A 81 -164.66 -115.74 REMARK 500 2 HIS A 83 88.96 57.41 REMARK 500 3 CYS A 27 98.65 -68.57 REMARK 500 3 VAL A 28 113.65 -35.81 REMARK 500 3 HIS A 36 -56.64 -130.63 REMARK 500 3 SER A 45 31.06 -96.73 REMARK 500 3 CYS A 54 -39.63 -156.60 REMARK 500 3 SER A 55 97.73 69.28 REMARK 500 3 THR A 56 42.95 -158.48 REMARK 500 3 THR A 69 -118.35 -156.93 REMARK 500 3 THR A 72 -59.66 75.35 REMARK 500 3 LEU A 75 103.01 72.31 REMARK 500 4 TYR A 15 -1.44 -143.62 REMARK 500 4 ALA A 30 -65.69 -103.30 REMARK 500 4 ASP A 35 -58.23 68.74 REMARK 500 4 PRO A 37 -68.24 -26.47 REMARK 500 4 HIS A 38 -98.27 -143.46 REMARK 500 4 TYR A 53 -16.55 75.96 REMARK 500 4 CYS A 54 16.96 -153.58 REMARK 500 4 SER A 55 -153.68 62.57 REMARK 500 4 THR A 56 73.70 94.93 REMARK 500 4 THR A 72 -20.96 80.70 REMARK 500 4 CYS A 74 83.10 55.90 REMARK 500 REMARK 500 THIS ENTRY HAS 305 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 54 SER A 55 20 -148.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 150 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 27 SG REMARK 620 2 HIS A 38 ND1 93.2 REMARK 620 3 CYS A 51 SG 109.8 119.6 REMARK 620 4 CYS A 54 SG 118.8 105.3 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 150 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BNR55 RELATED DB: TARGETDB DBREF 2JZ8 A 1 79 UNP Q6G326 Q6G326_BARHE 1 79 SEQADV 2JZ8 LEU A 80 UNP Q6G326 EXPRESSION TAG SEQADV 2JZ8 GLU A 81 UNP Q6G326 EXPRESSION TAG SEQADV 2JZ8 HIS A 82 UNP Q6G326 EXPRESSION TAG SEQADV 2JZ8 HIS A 83 UNP Q6G326 EXPRESSION TAG SEQADV 2JZ8 HIS A 84 UNP Q6G326 EXPRESSION TAG SEQADV 2JZ8 HIS A 85 UNP Q6G326 EXPRESSION TAG SEQADV 2JZ8 HIS A 86 UNP Q6G326 EXPRESSION TAG SEQADV 2JZ8 HIS A 87 UNP Q6G326 EXPRESSION TAG SEQRES 1 A 87 MET ALA ASP TYR ASN ILE PRO HIS PHE GLN ASN ASP LEU SEQRES 2 A 87 GLY TYR LYS ILE ILE GLU ILE GLY VAL LYS GLU PHE MET SEQRES 3 A 87 CYS VAL GLY ALA THR GLN PRO PHE ASP HIS PRO HIS ILE SEQRES 4 A 87 PHE ILE ASP MET GLY SER THR ASP GLU LYS ILE CYS PRO SEQRES 5 A 87 TYR CYS SER THR LEU TYR ARG TYR ASP PRO SER LEU SER SEQRES 6 A 87 TYR ASN GLN THR ASN PRO THR GLY CYS LEU TYR ASN PRO SEQRES 7 A 87 LYS LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 150 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ SHEET 1 A 3 ILE A 17 GLU A 19 0 SHEET 2 A 3 LEU A 57 ARG A 59 1 O ARG A 59 N ILE A 18 SHEET 3 A 3 GLU A 48 LYS A 49 -1 N LYS A 49 O TYR A 58 SHEET 1 B 2 GLU A 24 MET A 26 0 SHEET 2 B 2 PHE A 40 ASP A 42 -1 O ILE A 41 N PHE A 25 LINK SG CYS A 27 ZN ZN A 150 1555 1555 2.18 LINK ND1 HIS A 38 ZN ZN A 150 1555 1555 2.13 LINK SG CYS A 51 ZN ZN A 150 1555 1555 2.19 LINK SG CYS A 54 ZN ZN A 150 1555 1555 2.18 SITE 1 AC1 4 CYS A 27 HIS A 38 CYS A 51 CYS A 54 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1