HEADER METAL BINDING PROTEIN 09-JAN-08 2JZI TITLE STRUCTURE OF CALMODULIN COMPLEXED WITH THE CALMODULIN BINDING DOMAIN TITLE 2 OF CALCINEURIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAM; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT COMPND 8 ALPHA ISOFORM; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 391-414, COMPND 11 CALMODULIN_BINDING_DOMAIN_OF_CALCINEURIN; COMPND 12 SYNONYM: CALMODULIN-DEPENDENT CALCINEURIN A SUBUNIT ALPHA ISOFORM, COMPND 13 CAM-PRP CATALYTIC SUBUNIT; COMPND 14 EC: 3.1.3.16; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET29C; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: PPP3CA, CALNA, CNA; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PET29C KEYWDS CALCIUM BINDING PROTEIN, ACETYLATION, METHYLATION, PHOSPHOPROTEIN, KEYWDS 2 UBL CONJUGATION, ALTERNATIVE SPLICING, CALMODULIN-BINDING, KEYWDS 3 HYDROLASE, IRON, METAL-BINDING, NUCLEUS, PROTEIN PHOSPHATASE, ZINC, KEYWDS 4 METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.CHYAN,J.HUANG,D.IRENE,T.LIN REVDAT 3 29-MAY-24 2JZI 1 REMARK REVDAT 2 16-MAR-22 2JZI 1 REMARK LINK REVDAT 1 13-JAN-09 2JZI 0 JRNL AUTH C.CHYAN,J.HUANG,D.IRENE,T.LIN JRNL TITL STRUCTURE OF CALMODULIN COMPLEXED WITH THE CALMODULIN JRNL TITL 2 BINDING DOMAIN OF CALCINEURIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CNS 1.2 REMARK 3 AUTHORS : HERRMANN, GUNTERT AND WUTHRICH (CYANA), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100485. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 CALMODULIN, 1 MM [U-99% 13C; U- REMARK 210 99% 15N] CALMODULIN BINDING REMARK 210 DOMAIN OF CALCINEURIN, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D CBCA(CO) REMARK 210 NH; 3D CBCANH; 3D C(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HNCO; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 2D DQF-COSY; 2D 1H-1H REMARK 210 TOCSY; 2D 1H-1H NOESY; 3D H(CCO) REMARK 210 NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 42 56.46 -159.64 REMARK 500 1 ARG A 74 95.56 -51.00 REMARK 500 1 ASP A 78 -167.30 -106.68 REMARK 500 1 THR A 79 -167.41 63.32 REMARK 500 2 ASN A 42 56.49 -159.58 REMARK 500 2 ARG A 74 96.39 -47.88 REMARK 500 2 ASP A 78 -167.92 -60.14 REMARK 500 2 THR A 79 -165.80 63.58 REMARK 500 3 ASN A 42 56.59 -159.64 REMARK 500 3 ASP A 78 -166.67 -176.39 REMARK 500 3 THR A 79 63.46 63.72 REMARK 500 3 ASP A 80 30.84 -163.61 REMARK 500 4 ASN A 42 56.62 -159.59 REMARK 500 4 LYS A 77 -77.88 -56.68 REMARK 500 4 ASP A 78 -177.94 178.30 REMARK 500 4 THR A 79 -173.28 61.83 REMARK 500 5 ASP A 2 -169.67 -61.18 REMARK 500 5 ASN A 42 56.46 -159.76 REMARK 500 5 THR A 79 -167.51 61.59 REMARK 500 5 ASP A 80 65.01 64.25 REMARK 500 6 ASN A 42 56.57 -159.56 REMARK 500 6 THR A 79 -67.52 68.30 REMARK 500 7 ASN A 42 56.29 -159.87 REMARK 500 7 ASP A 78 -173.23 -176.43 REMARK 500 7 THR A 79 81.64 64.25 REMARK 500 7 ASP A 80 37.25 -176.78 REMARK 500 8 ASP A 2 -169.51 -64.96 REMARK 500 8 ASN A 42 56.43 -159.65 REMARK 500 8 THR A 79 -167.27 60.46 REMARK 500 8 ASP A 80 65.96 63.45 REMARK 500 9 ASN A 42 56.33 -159.66 REMARK 500 9 ARG A 74 89.65 -57.01 REMARK 500 9 ASP A 78 -76.85 -90.42 REMARK 500 9 THR A 79 -164.93 54.72 REMARK 500 9 ASP A 80 63.01 63.28 REMARK 500 10 ASP A 2 -169.56 -66.09 REMARK 500 10 ASN A 42 56.49 -159.59 REMARK 500 10 ASP A 78 -166.95 -174.75 REMARK 500 10 THR A 79 88.35 63.29 REMARK 500 10 ASP A 80 53.46 -166.01 REMARK 500 11 ASN A 42 56.22 -159.69 REMARK 500 11 LYS A 77 -81.55 -55.93 REMARK 500 11 ASP A 78 -178.71 177.72 REMARK 500 11 THR A 79 -179.44 60.99 REMARK 500 12 ASP A 2 -169.44 -64.87 REMARK 500 12 ASN A 42 56.17 -159.71 REMARK 500 12 ASP A 78 -169.00 -177.05 REMARK 500 12 THR A 79 -167.27 62.17 REMARK 500 12 ASP A 80 60.60 63.96 REMARK 500 13 ASP A 2 -168.66 -62.69 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 149 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD2 REMARK 620 2 ASP A 20 OD1 49.4 REMARK 620 3 ASP A 22 OD1 61.4 67.4 REMARK 620 4 ASP A 22 OD2 70.2 106.5 47.1 REMARK 620 5 ASP A 24 OD1 56.0 96.9 104.9 75.0 REMARK 620 6 ASP A 24 OD2 93.7 142.7 102.2 55.1 49.5 REMARK 620 7 THR A 26 O 63.8 63.4 122.0 124.9 54.9 98.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 150 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD2 REMARK 620 2 ASP A 56 OD1 49.7 REMARK 620 3 ASP A 58 OD2 99.1 106.4 REMARK 620 4 ASP A 58 OD1 55.4 91.4 49.5 REMARK 620 5 ASN A 60 OD1 64.4 105.1 115.9 75.7 REMARK 620 6 ASP A 64 OD1 118.6 72.4 76.7 116.8 167.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 151 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 ASP A 93 OD1 49.5 REMARK 620 3 ASP A 95 OD2 115.0 107.7 REMARK 620 4 ASP A 95 OD1 68.8 84.9 47.1 REMARK 620 5 ASN A 97 OD1 101.3 139.1 53.7 55.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 152 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 129 OD2 49.0 REMARK 620 3 ASP A 131 OD1 62.6 88.4 REMARK 620 4 ASP A 131 OD2 107.7 116.5 45.3 REMARK 620 5 ASP A 133 OD2 143.4 97.0 110.7 72.4 REMARK 620 6 ASP A 133 OD1 102.6 54.2 124.5 112.1 49.0 REMARK 620 7 GLN A 135 O 64.2 59.5 126.6 171.9 114.4 72.0 REMARK 620 8 GLU A 140 OE1 61.7 105.8 81.0 105.7 154.7 142.1 70.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 152 DBREF 2JZI A 1 148 UNP P62158 CALM_HUMAN 2 149 DBREF 2JZI B 1 24 UNP Q08209 PP2BA_HUMAN 391 414 SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 A 148 MET MET THR ALA LYS SEQRES 1 B 24 ALA ARG LYS GLU VAL ILE ARG ASN LYS ILE ARG ALA ILE SEQRES 2 B 24 GLY LYS MET ALA ARG VAL PHE SER VAL LEU ARG HET CA A 149 1 HET CA A 150 1 HET CA A 151 1 HET CA A 152 1 HETNAM CA CALCIUM ION FORMUL 3 CA 4(CA 2+) HELIX 1 1 THR A 5 PHE A 19 1 15 HELIX 2 2 THR A 28 GLN A 41 1 14 HELIX 3 3 THR A 44 ASP A 56 1 13 HELIX 4 4 ASP A 64 ALA A 73 1 10 HELIX 5 5 GLU A 82 ASP A 93 1 12 HELIX 6 6 SER A 101 LEU A 112 1 12 HELIX 7 7 THR A 117 ASP A 129 1 13 HELIX 8 8 ASN A 137 ALA A 147 1 11 HELIX 9 9 ALA B 1 ARG B 24 1 24 LINK OD2 ASP A 20 CA CA A 149 1555 1555 2.63 LINK OD1 ASP A 20 CA CA A 149 1555 1555 2.62 LINK OD1 ASP A 22 CA CA A 149 1555 1555 2.74 LINK OD2 ASP A 22 CA CA A 149 1555 1555 2.75 LINK OD1 ASP A 24 CA CA A 149 1555 1555 2.62 LINK OD2 ASP A 24 CA CA A 149 1555 1555 2.62 LINK O THR A 26 CA CA A 149 1555 1555 2.82 LINK OD2 ASP A 56 CA CA A 150 1555 1555 2.60 LINK OD1 ASP A 56 CA CA A 150 1555 1555 2.62 LINK OD2 ASP A 58 CA CA A 150 1555 1555 2.61 LINK OD1 ASP A 58 CA CA A 150 1555 1555 2.64 LINK OD1 ASN A 60 CA CA A 150 1555 1555 2.59 LINK OD1 ASP A 64 CA CA A 150 1555 1555 2.80 LINK OD2 ASP A 93 CA CA A 151 1555 1555 2.62 LINK OD1 ASP A 93 CA CA A 151 1555 1555 2.62 LINK OD2 ASP A 95 CA CA A 151 1555 1555 2.76 LINK OD1 ASP A 95 CA CA A 151 1555 1555 2.75 LINK OD1 ASN A 97 CA CA A 151 1555 1555 2.61 LINK OD1 ASP A 129 CA CA A 152 1555 1555 2.63 LINK OD2 ASP A 129 CA CA A 152 1555 1555 2.65 LINK OD1 ASP A 131 CA CA A 152 1555 1555 2.81 LINK OD2 ASP A 131 CA CA A 152 1555 1555 2.87 LINK OD2 ASP A 133 CA CA A 152 1555 1555 2.64 LINK OD1 ASP A 133 CA CA A 152 1555 1555 2.65 LINK O GLN A 135 CA CA A 152 1555 1555 2.84 LINK OE1 GLU A 140 CA CA A 152 1555 1555 2.83 SITE 1 AC1 5 ASP A 20 ASP A 22 ASP A 24 THR A 26 SITE 2 AC1 5 THR A 28 SITE 1 AC2 4 ILE A 27 ASP A 56 ALA A 57 ASP A 58 SITE 1 AC3 3 ASP A 93 ASP A 95 ASN A 97 SITE 1 AC4 2 TYR A 99 ASP A 129 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1