HEADER METAL BINDING PROTEIN 31-JAN-08 2K0C TITLE ZINC-FINGER 2 OF NUP153 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RANBP2-TYPE 2 DOMAIN (UNP RESIDUES 703-755); COMPND 5 SYNONYM: NUCLEOPORIN NUP153, 153 KDA NUCLEOPORIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 GENE: NUP153; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 KEYWDS ZINC-FINGER, DNA-BINDING, METAL-BINDING, MRNA TRANSPORT, NUCLEAR PORE KEYWDS 2 COMPLEX, NUCLEUS, PHOSPHOPROTEIN, PROTEIN TRANSPORT, TRANSLOCATION, KEYWDS 3 TRANSPORT, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.A.BANGERT,N.SCHRADER,I.R.VETTER,R.STOLL REVDAT 4 16-MAR-22 2K0C 1 REMARK REVDAT 3 24-FEB-09 2K0C 1 VERSN REVDAT 2 22-JUL-08 2K0C 1 JRNL REVDAT 1 01-JUL-08 2K0C 0 JRNL AUTH N.SCHRADER,C.KOERNER,K.KOESSMEIER,J.A.BANGERT, JRNL AUTH 2 A.WITTINGHOFER,R.STOLL,I.R.VETTER JRNL TITL THE CRYSTAL STRUCTURE OF THE RAN-NUP153ZNF2 COMPLEX: A JRNL TITL 2 GENERAL RAN DOCKING SITE AT THE NUCLEAR PORE COMPLEX. JRNL REF STRUCTURE V. 16 1116 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18611384 JRNL DOI 10.1016/J.STR.2008.03.014 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, XPLOR-NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA, REMARK 3 G.M.CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K0C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000100515. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.9-1.2 MM NUP153ZNF2, 0.9-1.2 REMARK 210 MM ZINC ION, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 SER A -17 REMARK 465 ASP A -16 REMARK 465 LYS A -15 REMARK 465 PRO A -14 REMARK 465 ALA A -13 REMARK 465 SER A -12 REMARK 465 THR A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLY A -7 REMARK 465 PHE A -6 REMARK 465 GLY A -5 REMARK 465 ASP A -4 REMARK 465 LYS A -3 REMARK 465 PHE A -2 REMARK 465 LYS A -1 REMARK 465 PRO A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 18 -179.43 -51.52 REMARK 500 1 VAL A 19 -47.04 -155.31 REMARK 500 1 CYS A 24 11.90 -140.57 REMARK 500 1 GLU A 25 78.01 40.80 REMARK 500 1 LYS A 28 65.86 63.03 REMARK 500 2 ALA A 18 -172.31 -54.92 REMARK 500 2 VAL A 19 -37.71 -168.91 REMARK 500 2 CYS A 24 13.07 -142.77 REMARK 500 2 GLU A 25 73.08 43.78 REMARK 500 2 THR A 26 157.21 -44.54 REMARK 500 2 LYS A 28 75.17 57.68 REMARK 500 3 VAL A 19 -42.42 -137.50 REMARK 500 3 CYS A 24 83.22 -155.43 REMARK 500 3 GLU A 25 92.09 -33.68 REMARK 500 4 VAL A 19 23.55 -157.38 REMARK 500 4 LYS A 20 75.27 -158.00 REMARK 500 4 CYS A 24 24.39 -149.95 REMARK 500 4 GLU A 25 96.28 36.90 REMARK 500 4 PRO A 27 40.78 -84.62 REMARK 500 5 ALA A 18 -179.46 -52.35 REMARK 500 5 VAL A 19 -43.87 -154.73 REMARK 500 5 CYS A 24 81.91 -153.63 REMARK 500 5 GLU A 25 92.68 -30.37 REMARK 500 5 PRO A 27 41.47 -82.89 REMARK 500 6 ALA A 18 -179.39 -51.96 REMARK 500 6 VAL A 19 -45.68 -155.17 REMARK 500 6 CYS A 24 84.99 -155.45 REMARK 500 6 GLU A 25 92.64 -30.99 REMARK 500 7 ALA A 18 175.85 -52.38 REMARK 500 7 VAL A 19 -41.69 -156.94 REMARK 500 7 CYS A 24 83.66 -155.02 REMARK 500 7 GLU A 25 91.67 -31.45 REMARK 500 7 PRO A 27 44.67 -81.46 REMARK 500 8 ALA A 18 177.45 -52.96 REMARK 500 8 VAL A 19 -43.33 -155.80 REMARK 500 8 GLU A 25 90.81 -30.54 REMARK 500 8 LYS A 28 93.41 51.55 REMARK 500 9 CYS A 10 21.35 -141.31 REMARK 500 9 LYS A 15 172.93 -56.55 REMARK 500 9 ALA A 18 -177.04 -52.54 REMARK 500 9 VAL A 19 -44.83 -155.13 REMARK 500 9 GLU A 25 89.70 -29.24 REMARK 500 9 THR A 26 158.53 -48.01 REMARK 500 9 LYS A 28 106.05 -48.64 REMARK 500 10 ALA A 18 178.91 -50.85 REMARK 500 10 VAL A 19 -41.51 -158.60 REMARK 500 10 CYS A 24 24.60 -146.75 REMARK 500 10 GLU A 25 86.72 28.87 REMARK 500 10 PRO A 27 31.03 -85.45 REMARK 500 11 ALA A 18 174.20 -51.09 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 54 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 10 SG 110.3 REMARK 620 3 CYS A 21 SG 111.6 105.4 REMARK 620 4 CYS A 24 SG 107.5 111.4 110.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 54 DBREF 2K0C A -17 35 UNP P49791 NU153_RAT 703 755 SEQRES 1 A 53 SER ASP LYS PRO ALA SER THR SER GLY THR GLY PHE GLY SEQRES 2 A 53 ASP LYS PHE LYS PRO ALA ILE GLY THR TRP ASP CYS ASP SEQRES 3 A 53 THR CYS LEU VAL GLN ASN LYS PRO GLU ALA VAL LYS CYS SEQRES 4 A 53 VAL ALA CYS GLU THR PRO LYS PRO GLY THR GLY VAL LYS SEQRES 5 A 53 ARG HET ZN A 54 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ SHEET 1 A 2 TRP A 5 CYS A 7 0 SHEET 2 A 2 VAL A 12 ASN A 14 -1 O VAL A 12 N CYS A 7 LINK SG CYS A 7 ZN ZN A 54 1555 1555 2.54 LINK SG CYS A 10 ZN ZN A 54 1555 1555 2.54 LINK SG CYS A 21 ZN ZN A 54 1555 1555 2.54 LINK SG CYS A 24 ZN ZN A 54 1555 1555 2.54 SITE 1 AC1 1 CYS A 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1