data_2K1H # _entry.id 2K1H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2K1H pdb_00002k1h 10.2210/pdb2k1h/pdb RCSB RCSB100556 ? ? WWPDB D_1000100556 ? ? BMRB 15678 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB SeR13 . unspecified BMRB 15678 . unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2K1H _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-03-05 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lee, H.' 1 'Wylie, G.' 2 'Bansal, S.' 3 'Wang, X.' 4 'Shastry, R.' 5 'Jiang, M.' 6 'Cunningham, K.' 7 'Ma, L.' 8 'Xiao, R.' 9 'Liu, J.' 10 'Baran, M.C.' 11 'Swapna, G.' 12 'Acton, T.B.' 13 'Rost, B.' 14 'Montelione, G.T.' 15 'Prestegard, J.H.' 16 'Northeast Structural Genomics Consortium (NESG)' 17 # _citation.id primary _citation.title 'Solution Structure of SeR13.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, H.' 1 ? primary 'Wylie, G.' 2 ? primary 'Bansal, S.' 3 ? primary 'Montelione, G.T.' 4 ? primary 'Prestegard, J.H.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Uncharacterized protein SeR13' _entity.formula_weight 10963.061 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation S28F _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEIIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQEGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIEN TFAKSNLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MEIIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQEGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIEN TFAKSNLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier SeR13 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 ILE n 1 4 ILE n 1 5 ALA n 1 6 ILE n 1 7 SER n 1 8 GLU n 1 9 THR n 1 10 PRO n 1 11 ASN n 1 12 HIS n 1 13 ASN n 1 14 THR n 1 15 MET n 1 16 LYS n 1 17 VAL n 1 18 SER n 1 19 LEU n 1 20 SER n 1 21 GLU n 1 22 PRO n 1 23 ARG n 1 24 GLN n 1 25 ASP n 1 26 ASN n 1 27 SER n 1 28 PHE n 1 29 THR n 1 30 THR n 1 31 TYR n 1 32 THR n 1 33 ALA n 1 34 ALA n 1 35 GLN n 1 36 GLU n 1 37 GLY n 1 38 GLN n 1 39 PRO n 1 40 GLU n 1 41 PHE n 1 42 ILE n 1 43 ASN n 1 44 ARG n 1 45 LEU n 1 46 PHE n 1 47 GLU n 1 48 ILE n 1 49 GLU n 1 50 GLY n 1 51 VAL n 1 52 LYS n 1 53 SER n 1 54 ILE n 1 55 PHE n 1 56 TYR n 1 57 VAL n 1 58 LEU n 1 59 ASP n 1 60 PHE n 1 61 ILE n 1 62 SER n 1 63 ILE n 1 64 ASP n 1 65 LYS n 1 66 GLU n 1 67 ASP n 1 68 ASN n 1 69 ALA n 1 70 ASN n 1 71 TRP n 1 72 ASN n 1 73 GLU n 1 74 LEU n 1 75 LEU n 1 76 PRO n 1 77 GLN n 1 78 ILE n 1 79 GLU n 1 80 ASN n 1 81 THR n 1 82 PHE n 1 83 ALA n 1 84 LYS n 1 85 SER n 1 86 ASN n 1 87 LEU n 1 88 GLU n 1 89 HIS n 1 90 HIS n 1 91 HIS n 1 92 HIS n 1 93 HIS n 1 94 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene SE_1124 _entity_src_gen.gene_src_species 'Staphylococcus epidermidis' _entity_src_gen.gene_src_strain 'ATCC 12228' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus epidermidis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 176280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 12228 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8CSK1_STAES _struct_ref.pdbx_db_accession Q8CSK1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEIIAISETPNHNTMKVSLSEPRQDNSSTTYTAAQEGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIEN TFAKSN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2K1H _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 86 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8CSK1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 86 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 86 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2K1H PHE A 28 ? UNP Q8CSK1 SER 28 'engineered mutation' 28 1 1 2K1H LEU A 87 ? UNP Q8CSK1 ? ? 'expression tag' 87 2 1 2K1H GLU A 88 ? UNP Q8CSK1 ? ? 'expression tag' 88 3 1 2K1H HIS A 89 ? UNP Q8CSK1 ? ? 'expression tag' 89 4 1 2K1H HIS A 90 ? UNP Q8CSK1 ? ? 'expression tag' 90 5 1 2K1H HIS A 91 ? UNP Q8CSK1 ? ? 'expression tag' 91 6 1 2K1H HIS A 92 ? UNP Q8CSK1 ? ? 'expression tag' 92 7 1 2K1H HIS A 93 ? UNP Q8CSK1 ? ? 'expression tag' 93 8 1 2K1H HIS A 94 ? UNP Q8CSK1 ? ? 'expression tag' 94 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D C(CO)NH' 1 5 1 '3D HNCO' 1 6 1 '3D HNCACB' 1 7 1 '3D H(CCO)NH' 1 8 1 '3D HCCH-TOCSY' 1 9 1 '3D 1H-15N NOESY' 1 10 1 '3D 1H-15N TOCSY' 1 11 1 '3D 1H-13C NOESY' 1 12 2 '2D 1H-15N HSQC-TROSY' 1 13 3 '2D 1H-15N HSQC-TROSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1.07 mM [U-100% 13C; U-100% 15N] SeR13, 0.2 % sodium azide, 100 mM DTT, 5 mM CaCl2, 100 mM sodium chloride, 20 mM MES, 95% H2O/5% D2O ; 1 '95% H2O/5% D2O' ;0.86 mM [U-100% 13C; U-100% 15N] SeR13, 0.2 % sodium azide, 100 mM DTT, 5 mM CaCl2, 100 mM sodium chloride, 20 mM MES, 7 % Negative Charged Poly Acrylamide Compressed Gel, 95% H2O/5% D2O ; 2 '95% H2O/5% D2O' ;0.60 mM [U-100% 13C; U-100% 15N] SeR13, 0.2 % sodium azide, 100 mM DTT, 5 mM CaCl2, 100 mM sodium chloride, 20 mM MES, 7.5 % DMPS/DHPC Mixture, 95% H2O/5% D2O ; 3 '95% H2O/5% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2K1H _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2K1H _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2K1H _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.1 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2.18 2 Goddard 'chemical shift assignment' Sparky ? 3 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ;The oligomeric states of the SeR13 were verified by pulsed-field-gradient diffusion, dynamic light scattering, sedimentation equilibrium, and concentration dependent studies. The results indicated that the SeR13 self-associates weakly at protein concentration below 1 mM. Using the residual dipolar couplings as well as chemical shift perturbations on dilution, we constructed dimeric models for SeR13. Possible inter-subunit NOEs were identified based on these models. In cases where corresponding NOEs were observed, they were eliminated as constraints and the protein structure recalculated. The absence of structural variation and the failure to observed other predicted inter-subunit NOEs validated use of all NOEs as intra-subunit constraints. ; _exptl.entry_id 2K1H _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2K1H _struct.title 'Solution NMR structure of SeR13 from Staphylococcus epidermidis. Northeast Structural Genomics Consortium target SeR13' _struct.pdbx_model_details ;The oligomeric states of the SeR13 were verified by pulsed-field-gradient diffusion, dynamic light scattering, sedimentation equilibrium, and concentration dependent studies. The results indicated that the SeR13 self-associates weakly at protein concentration below 1 mM. Using the residual dipolar couplings as well as chemical shift perturbations on dilution, we constructed dimeric models for SeR13. Possible inter-subunit NOEs were identified based on these models. In cases where corresponding NOEs were observed, they were eliminated as constraints and the protein structure recalculated. The absence of structural variation and the failure to observed other predicted inter-subunit NOEs validated use of all NOEs as intra-subunit constraints. ; _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2K1H _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'Structural genomics, unknown function, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 39 ? GLU A 47 ? PRO A 39 GLU A 47 1 ? 9 HELX_P HELX_P2 2 ASN A 70 ? ASN A 86 ? ASN A 70 ASN A 86 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 15 ? SER A 18 ? MET A 15 SER A 18 A 2 PHE A 60 ? LYS A 65 ? PHE A 60 LYS A 65 A 3 VAL A 51 ? VAL A 57 ? VAL A 51 VAL A 57 A 4 THR A 30 ? TYR A 31 ? THR A 30 TYR A 31 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 17 ? N VAL A 17 O ILE A 61 ? O ILE A 61 A 2 3 O SER A 62 ? O SER A 62 N PHE A 55 ? N PHE A 55 A 3 4 O ILE A 54 ? O ILE A 54 N TYR A 31 ? N TYR A 31 # _atom_sites.entry_id 2K1H _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 MET 15 15 15 MET MET A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 TRP 71 71 71 TRP TRP A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 LEU 87 87 ? ? ? A . n A 1 88 GLU 88 88 ? ? ? A . n A 1 89 HIS 89 89 ? ? ? A . n A 1 90 HIS 90 90 ? ? ? A . n A 1 91 HIS 91 91 ? ? ? A . n A 1 92 HIS 92 92 ? ? ? A . n A 1 93 HIS 93 93 ? ? ? A . n A 1 94 HIS 94 94 ? ? ? A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-19 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' Other 6 4 'Structure model' 'Database references' 7 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' struct_ref_seq_dif 5 4 'Structure model' database_2 6 4 'Structure model' struct_ref_seq_dif 7 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id SeR13 1.07 mM '[U-100% 13C; U-100% 15N]' 1 'sodium azide' 0.2 % ? 1 DTT 100 mM ? 1 CaCl2 5 mM ? 1 'sodium chloride' 100 mM ? 1 MES 20 mM ? 1 SeR13 0.86 mM '[U-100% 13C; U-100% 15N]' 2 'sodium azide' 0.2 % ? 2 DTT 100 mM ? 2 CaCl2 5 mM ? 2 'sodium chloride' 100 mM ? 2 MES 20 mM ? 2 'Negative Charged Poly Acrylamide Compressed Gel' 7 % ? 2 SeR13 0.60 mM '[U-100% 13C; U-100% 15N]' 3 'sodium azide' 0.2 % ? 3 DTT 100 mM ? 3 CaCl2 5 mM ? 3 'sodium chloride' 100 mM ? 3 MES 20 mM ? 3 'DMPS/DHPC Mixture' 7.5 % ? 3 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 4 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LEU _pdbx_validate_close_contact.auth_seq_id_1 74 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 H _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ILE _pdbx_validate_close_contact.auth_seq_id_2 78 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 10 ? ? -65.41 31.17 2 1 THR A 32 ? ? -171.32 116.61 3 1 ALA A 33 ? ? 170.62 130.94 4 1 LEU A 58 ? ? 62.35 -150.05 5 1 GLU A 66 ? ? -58.98 172.48 6 2 PRO A 10 ? ? -65.62 29.49 7 2 ASN A 26 ? ? -71.99 45.72 8 2 THR A 32 ? ? -171.16 113.01 9 2 ALA A 33 ? ? 167.15 133.96 10 2 PRO A 39 ? ? -38.90 117.69 11 2 LEU A 58 ? ? 56.26 -156.27 12 2 SER A 85 ? ? -85.55 40.29 13 3 PRO A 10 ? ? -67.37 14.34 14 3 ARG A 23 ? ? -151.76 -156.22 15 3 GLN A 24 ? ? -46.86 -72.73 16 3 ASP A 25 ? ? -142.80 57.60 17 3 ASN A 26 ? ? 52.71 -72.48 18 3 SER A 27 ? ? 67.03 109.84 19 3 THR A 29 ? ? -165.40 108.46 20 3 THR A 32 ? ? -168.16 116.34 21 3 ALA A 33 ? ? 171.30 133.68 22 3 LEU A 58 ? ? 59.20 -148.85 23 4 ILE A 3 ? ? -48.05 155.67 24 4 ILE A 4 ? ? -130.93 -46.06 25 4 PRO A 10 ? ? -64.99 12.53 26 4 PRO A 22 ? ? -60.90 -72.86 27 4 ARG A 23 ? ? 47.46 105.66 28 4 GLN A 24 ? ? -57.52 -2.32 29 4 SER A 27 ? ? 55.10 123.88 30 4 THR A 32 ? ? -172.11 114.94 31 4 ALA A 33 ? ? 169.78 135.85 32 4 PHE A 41 ? ? -57.80 -1.70 33 4 LEU A 58 ? ? 54.75 -163.18 34 5 ILE A 3 ? ? -47.26 156.16 35 5 PRO A 10 ? ? -64.86 23.09 36 5 HIS A 12 ? ? -110.71 -71.14 37 5 ASP A 25 ? ? -142.00 59.26 38 5 ASN A 26 ? ? -59.71 -86.38 39 5 SER A 27 ? ? 45.09 -163.06 40 5 THR A 29 ? ? -165.25 107.24 41 5 THR A 32 ? ? -167.59 113.15 42 5 ALA A 33 ? ? 167.72 126.92 43 5 LEU A 58 ? ? 64.05 -149.58 44 5 SER A 85 ? ? -76.67 34.46 45 6 PRO A 10 ? ? -64.86 21.36 46 6 ARG A 23 ? ? -67.48 91.93 47 6 ASN A 26 ? ? 38.06 80.81 48 6 THR A 29 ? ? -166.95 107.01 49 6 THR A 32 ? ? -168.97 113.89 50 6 ALA A 33 ? ? 167.93 132.68 51 6 PRO A 39 ? ? -36.34 109.21 52 6 LEU A 58 ? ? 64.68 -160.54 53 7 PRO A 10 ? ? -64.25 7.95 54 7 ASN A 26 ? ? 54.70 -84.87 55 7 SER A 27 ? ? 56.77 107.55 56 7 ALA A 33 ? ? 170.07 137.63 57 7 PRO A 39 ? ? -39.17 119.74 58 7 LEU A 58 ? ? 63.85 -138.94 59 8 ILE A 3 ? ? -49.37 155.64 60 8 PRO A 10 ? ? -63.00 21.67 61 8 PRO A 22 ? ? -38.66 86.19 62 8 ASN A 26 ? ? 38.82 49.55 63 8 THR A 29 ? ? -160.81 108.33 64 8 THR A 32 ? ? -170.34 114.08 65 8 ALA A 33 ? ? 169.29 139.05 66 8 LEU A 58 ? ? 62.40 -131.25 67 9 PRO A 10 ? ? -49.69 -7.80 68 9 GLN A 24 ? ? -60.99 0.46 69 9 ASN A 26 ? ? -69.65 54.16 70 9 THR A 32 ? ? -167.43 116.28 71 9 ALA A 33 ? ? 168.15 134.38 72 9 PRO A 39 ? ? -36.86 114.23 73 9 LEU A 58 ? ? 57.39 -128.50 74 10 PRO A 10 ? ? -66.85 32.62 75 10 ASN A 13 ? ? -145.29 15.30 76 10 ASN A 26 ? ? -23.08 83.10 77 10 SER A 27 ? ? -93.31 -151.99 78 10 THR A 29 ? ? -167.07 107.11 79 10 THR A 32 ? ? -170.21 112.66 80 10 ALA A 33 ? ? 167.57 137.15 81 10 LEU A 58 ? ? 58.33 -156.17 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 87 ? A LEU 87 2 1 Y 1 A GLU 88 ? A GLU 88 3 1 Y 1 A HIS 89 ? A HIS 89 4 1 Y 1 A HIS 90 ? A HIS 90 5 1 Y 1 A HIS 91 ? A HIS 91 6 1 Y 1 A HIS 92 ? A HIS 92 7 1 Y 1 A HIS 93 ? A HIS 93 8 1 Y 1 A HIS 94 ? A HIS 94 9 2 Y 1 A LEU 87 ? A LEU 87 10 2 Y 1 A GLU 88 ? A GLU 88 11 2 Y 1 A HIS 89 ? A HIS 89 12 2 Y 1 A HIS 90 ? A HIS 90 13 2 Y 1 A HIS 91 ? A HIS 91 14 2 Y 1 A HIS 92 ? A HIS 92 15 2 Y 1 A HIS 93 ? A HIS 93 16 2 Y 1 A HIS 94 ? A HIS 94 17 3 Y 1 A LEU 87 ? A LEU 87 18 3 Y 1 A GLU 88 ? A GLU 88 19 3 Y 1 A HIS 89 ? A HIS 89 20 3 Y 1 A HIS 90 ? A HIS 90 21 3 Y 1 A HIS 91 ? A HIS 91 22 3 Y 1 A HIS 92 ? A HIS 92 23 3 Y 1 A HIS 93 ? A HIS 93 24 3 Y 1 A HIS 94 ? A HIS 94 25 4 Y 1 A LEU 87 ? A LEU 87 26 4 Y 1 A GLU 88 ? A GLU 88 27 4 Y 1 A HIS 89 ? A HIS 89 28 4 Y 1 A HIS 90 ? A HIS 90 29 4 Y 1 A HIS 91 ? A HIS 91 30 4 Y 1 A HIS 92 ? A HIS 92 31 4 Y 1 A HIS 93 ? A HIS 93 32 4 Y 1 A HIS 94 ? A HIS 94 33 5 Y 1 A LEU 87 ? A LEU 87 34 5 Y 1 A GLU 88 ? A GLU 88 35 5 Y 1 A HIS 89 ? A HIS 89 36 5 Y 1 A HIS 90 ? A HIS 90 37 5 Y 1 A HIS 91 ? A HIS 91 38 5 Y 1 A HIS 92 ? A HIS 92 39 5 Y 1 A HIS 93 ? A HIS 93 40 5 Y 1 A HIS 94 ? A HIS 94 41 6 Y 1 A LEU 87 ? A LEU 87 42 6 Y 1 A GLU 88 ? A GLU 88 43 6 Y 1 A HIS 89 ? A HIS 89 44 6 Y 1 A HIS 90 ? A HIS 90 45 6 Y 1 A HIS 91 ? A HIS 91 46 6 Y 1 A HIS 92 ? A HIS 92 47 6 Y 1 A HIS 93 ? A HIS 93 48 6 Y 1 A HIS 94 ? A HIS 94 49 7 Y 1 A LEU 87 ? A LEU 87 50 7 Y 1 A GLU 88 ? A GLU 88 51 7 Y 1 A HIS 89 ? A HIS 89 52 7 Y 1 A HIS 90 ? A HIS 90 53 7 Y 1 A HIS 91 ? A HIS 91 54 7 Y 1 A HIS 92 ? A HIS 92 55 7 Y 1 A HIS 93 ? A HIS 93 56 7 Y 1 A HIS 94 ? A HIS 94 57 8 Y 1 A LEU 87 ? A LEU 87 58 8 Y 1 A GLU 88 ? A GLU 88 59 8 Y 1 A HIS 89 ? A HIS 89 60 8 Y 1 A HIS 90 ? A HIS 90 61 8 Y 1 A HIS 91 ? A HIS 91 62 8 Y 1 A HIS 92 ? A HIS 92 63 8 Y 1 A HIS 93 ? A HIS 93 64 8 Y 1 A HIS 94 ? A HIS 94 65 9 Y 1 A LEU 87 ? A LEU 87 66 9 Y 1 A GLU 88 ? A GLU 88 67 9 Y 1 A HIS 89 ? A HIS 89 68 9 Y 1 A HIS 90 ? A HIS 90 69 9 Y 1 A HIS 91 ? A HIS 91 70 9 Y 1 A HIS 92 ? A HIS 92 71 9 Y 1 A HIS 93 ? A HIS 93 72 9 Y 1 A HIS 94 ? A HIS 94 73 10 Y 1 A LEU 87 ? A LEU 87 74 10 Y 1 A GLU 88 ? A GLU 88 75 10 Y 1 A HIS 89 ? A HIS 89 76 10 Y 1 A HIS 90 ? A HIS 90 77 10 Y 1 A HIS 91 ? A HIS 91 78 10 Y 1 A HIS 92 ? A HIS 92 79 10 Y 1 A HIS 93 ? A HIS 93 80 10 Y 1 A HIS 94 ? A HIS 94 #