HEADER TRANSPORT PROTEIN 21-MAR-08 2K23 TITLE SOLUTION STRUCTURE ANALYSIS OF THE RLCN2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOCALIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-298; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: LCN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS BETA BARREL, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR F.ZHANG,D.H.LIN REVDAT 3 30-OCT-24 2K23 1 REMARK REVDAT 2 16-MAR-22 2K23 1 REMARK REVDAT 1 24-MAR-09 2K23 0 JRNL AUTH F.ZHANG,D.H.LIN JRNL TITL NMR SOLUTION STRUCTURE OF RAT LIPOCALIN 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE, NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE, NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000100578. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM [U-99% 13C; U-99% 15N] REMARK 210 SODIUM PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 LEU A 94 HB ILE A 97 1.05 REMARK 500 HG21 VAL A 66 HD2 PHE A 83 1.12 REMARK 500 HB2 GLN A 104 HB THR A 126 1.18 REMARK 500 HG2 LYS A 43 HG11 VAL A 167 1.30 REMARK 500 HD22 LEU A 18 HA3 GLY A 90 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 -40.24 -155.45 REMARK 500 1 PRO A 9 85.57 -27.43 REMARK 500 1 PRO A 20 2.85 -69.55 REMARK 500 1 LYS A 43 79.85 -100.77 REMARK 500 1 ARG A 45 -37.79 -164.48 REMARK 500 1 GLN A 46 -91.19 -109.79 REMARK 500 1 SER A 47 87.81 -162.13 REMARK 500 1 ASN A 62 17.80 48.95 REMARK 500 1 SER A 86 -140.68 -73.58 REMARK 500 1 ASN A 129 -6.72 70.38 REMARK 500 1 LYS A 142 36.58 -73.27 REMARK 500 1 SER A 169 107.65 -51.97 REMARK 500 1 PRO A 171 99.31 -59.98 REMARK 500 1 GLN A 174 170.95 170.74 REMARK 500 1 ILE A 176 -36.92 173.63 REMARK 500 1 ASP A 177 96.45 -67.06 REMARK 500 2 GLN A 5 61.05 36.88 REMARK 500 2 PRO A 9 80.27 -26.84 REMARK 500 2 PHE A 27 30.38 -99.25 REMARK 500 2 ARG A 45 -29.35 -153.74 REMARK 500 2 GLN A 46 -53.64 -133.63 REMARK 500 2 SER A 47 104.08 169.79 REMARK 500 2 ASN A 62 25.14 45.93 REMARK 500 2 SER A 86 -139.05 -72.15 REMARK 500 2 ASN A 129 -4.72 74.86 REMARK 500 2 LYS A 142 39.14 -77.19 REMARK 500 2 PRO A 171 98.68 -62.00 REMARK 500 3 THR A 4 -82.50 -90.49 REMARK 500 3 PRO A 9 75.64 -9.12 REMARK 500 3 ARG A 45 -42.48 -173.54 REMARK 500 3 SER A 47 75.40 171.29 REMARK 500 3 ASN A 62 27.53 43.61 REMARK 500 3 SER A 87 -7.95 59.68 REMARK 500 3 ASN A 96 63.33 -150.34 REMARK 500 3 ASN A 129 -0.86 63.52 REMARK 500 3 LYS A 142 23.11 -72.19 REMARK 500 3 PRO A 171 93.81 -60.51 REMARK 500 3 GLN A 174 -172.80 -172.20 REMARK 500 3 ILE A 176 -26.87 -171.59 REMARK 500 4 SER A 3 45.53 -81.58 REMARK 500 4 ASN A 6 -159.45 -118.95 REMARK 500 4 PRO A 9 80.00 -21.77 REMARK 500 4 ARG A 45 -34.44 -163.56 REMARK 500 4 GLN A 46 -83.33 -116.15 REMARK 500 4 SER A 47 77.37 179.07 REMARK 500 4 ASN A 62 3.01 54.26 REMARK 500 4 ARG A 72 72.63 -104.65 REMARK 500 4 SER A 86 -141.27 -70.32 REMARK 500 4 ASN A 96 31.64 -145.82 REMARK 500 4 ASN A 129 -10.22 72.54 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K23 A 1 178 UNP Q5HZF1 Q5HZF1_RAT 21 198 SEQRES 1 A 178 GLN ASP SER THR GLN ASN LEU ILE PRO ALA PRO PRO LEU SEQRES 2 A 178 ILE SER VAL PRO LEU GLN PRO GLY PHE TRP THR GLU ARG SEQRES 3 A 178 PHE GLN GLY ARG TRP PHE VAL VAL GLY LEU ALA GLY ASN SEQRES 4 A 178 ALA VAL GLN LYS GLU ARG GLN SER ARG PHE THR MET TYR SEQRES 5 A 178 SER THR ILE TYR GLU LEU GLN GLU ASP ASN SER TYR ASN SEQRES 6 A 178 VAL THR SER ILE LEU VAL ARG GLY GLN GLY CYS ARG TYR SEQRES 7 A 178 TRP ILE ARG THR PHE VAL PRO SER SER ARG PRO GLY GLN SEQRES 8 A 178 PHE THR LEU GLY ASN ILE HIS SER TYR PRO GLN ILE GLN SEQRES 9 A 178 SER TYR ASP VAL GLN VAL ALA ASP THR ASP TYR ASP GLN SEQRES 10 A 178 PHE ALA MET VAL PHE PHE GLN LYS THR SER GLU ASN LYS SEQRES 11 A 178 GLN TYR PHE LYS VAL THR LEU TYR GLY ARG THR LYS GLY SEQRES 12 A 178 LEU SER ASP GLU LEU LYS GLU ARG PHE VAL SER PHE ALA SEQRES 13 A 178 LYS SER LEU GLY LEU LYS ASP ASN ASN ILE VAL PHE SER SEQRES 14 A 178 VAL PRO THR ASP GLN CYS ILE ASP ASN HELIX 1 1 PRO A 12 VAL A 16 5 5 HELIX 2 2 TRP A 23 GLN A 28 5 6 HELIX 3 3 ASN A 96 TYR A 100 5 5 HELIX 4 4 SER A 145 LEU A 159 1 15 HELIX 5 5 LYS A 162 ASN A 164 5 3 SHEET 1 A10 ILE A 166 VAL A 167 0 SHEET 2 A10 GLY A 29 GLY A 38 -1 N LEU A 36 O VAL A 167 SHEET 3 A10 LYS A 130 GLY A 139 -1 O LEU A 137 N VAL A 34 SHEET 4 A10 ALA A 119 SER A 127 -1 N LYS A 125 O TYR A 132 SHEET 5 A10 ILE A 103 ASP A 112 -1 N GLN A 109 O PHE A 122 SHEET 6 A10 GLN A 91 LEU A 94 -1 N PHE A 92 O VAL A 108 SHEET 7 A10 ARG A 77 PRO A 85 -1 N VAL A 84 O THR A 93 SHEET 8 A10 TYR A 64 LEU A 70 -1 N TYR A 64 O PHE A 83 SHEET 9 A10 SER A 53 LEU A 58 -1 N GLU A 57 O ASN A 65 SHEET 10 A10 GLY A 29 GLY A 38 -1 N GLY A 29 O TYR A 56 SSBOND 1 CYS A 76 CYS A 175 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 2855 ASN A 178 ENDMDL MODEL 2 TER 2855 ASN A 178 ENDMDL MODEL 3 TER 2855 ASN A 178 ENDMDL MODEL 4 TER 2855 ASN A 178 ENDMDL MODEL 5 TER 2855 ASN A 178 ENDMDL MODEL 6 TER 2855 ASN A 178 ENDMDL MODEL 7 TER 2855 ASN A 178 ENDMDL MODEL 8 TER 2855 ASN A 178 ENDMDL MODEL 9 TER 2855 ASN A 178 ENDMDL MODEL 10 TER 2855 ASN A 178 ENDMDL MODEL 11 TER 2855 ASN A 178 ENDMDL MODEL 12 TER 2855 ASN A 178 ENDMDL MODEL 13 TER 2855 ASN A 178 ENDMDL MODEL 14 TER 2855 ASN A 178 ENDMDL MODEL 15 TER 2855 ASN A 178 ENDMDL CONECT 1198 2804 CONECT 2804 1198 MASTER 149 0 0 5 10 0 0 6 1450 1 2 14 END