HEADER SIGNALING PROTEIN 02-APR-08 2K2M TITLE STRUCTURAL BASIS OF PXXDY MOTIF RECOGNITION IN SH3 BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPS8-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN (UNP RESIDUES 481-536); COMPND 5 SYNONYM: EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE 8-RELATED COMPND 6 PROTEIN 1, EPS8-LIKE PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: EPS8L1, DRC3, EPS8R1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PGEX6P KEYWDS ALTERNATIVE SPLICING, COILED COIL, CYTOPLASM, SH3 DOMAIN, SIGNALING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.AITIO,M.HELLMAN,T.KESTI,I.KLEINO,O.SAMUILOVA,H.TOSSAVAINEN, AUTHOR 2 K.SAKSELA,P.PERMI REVDAT 4 08-MAY-24 2K2M 1 REMARK REVDAT 3 14-JUN-23 2K2M 1 REMARK REVDAT 2 19-FEB-20 2K2M 1 REMARK SEQADV REVDAT 1 17-FEB-09 2K2M 0 JRNL AUTH O.AITIO,M.HELLMAN,T.KESTI,I.KLEINO,O.SAMUILOVA,K.PAAKKONEN, JRNL AUTH 2 H.TOSSAVAINEN,K.SAKSELA,P.PERMI JRNL TITL STRUCTURAL BASIS OF PXXDY MOTIF RECOGNITION IN SH3 BINDING. JRNL REF J.MOL.BIOL. V. 382 167 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18644376 JRNL DOI 10.1016/J.JMB.2008.07.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, AMBER, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), CASE, REMARK 3 DARDEN, CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, REMARK 3 AND KOLLM (AMBER), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000100597. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-13C; U-15N] EPS8L1SH3, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D IHNCACB; 3D REMARK 210 HCCH-COSY; 3D CC(CO)NH; 3D H(CCO) REMARK 210 NH; 2D (HB)CB(CGCD)HD; 2D (HB) REMARK 210 CB(CGCDCE)HE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, VNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 477 56.44 -165.33 REMARK 500 1 PHE A 489 103.66 -160.72 REMARK 500 1 ARG A 492 18.55 -146.50 REMARK 500 1 SER A 494 -46.40 -167.79 REMARK 500 1 TYR A 535 77.59 -116.69 REMARK 500 2 ARG A 492 24.19 -144.71 REMARK 500 2 SER A 495 12.71 -142.89 REMARK 500 3 ARG A 492 21.83 -142.73 REMARK 500 3 SER A 495 44.08 -145.60 REMARK 500 3 TYR A 535 74.98 -117.70 REMARK 500 4 ARG A 492 26.02 -147.48 REMARK 500 4 ASN A 493 -179.93 -69.19 REMARK 500 4 SER A 495 23.66 -145.46 REMARK 500 5 SER A 477 60.69 -68.37 REMARK 500 5 ALA A 491 -74.42 -134.27 REMARK 500 5 SER A 494 109.59 -52.21 REMARK 500 6 SER A 477 40.45 -79.82 REMARK 500 6 ALA A 479 70.89 -69.00 REMARK 500 6 ALA A 491 -68.07 -146.68 REMARK 500 6 ARG A 492 26.30 45.03 REMARK 500 6 TYR A 535 73.78 -119.51 REMARK 500 7 ARG A 492 25.67 -145.37 REMARK 500 7 ASN A 493 -177.76 -69.86 REMARK 500 7 SER A 495 20.66 -142.13 REMARK 500 7 TYR A 535 77.53 -117.76 REMARK 500 8 ARG A 492 15.07 -150.05 REMARK 500 8 TYR A 535 70.28 -119.32 REMARK 500 9 SER A 477 29.88 -69.17 REMARK 500 9 ARG A 492 19.60 -145.71 REMARK 500 9 TYR A 535 69.78 -119.64 REMARK 500 10 LEU A 475 50.92 -103.09 REMARK 500 10 LEU A 480 39.90 -85.92 REMARK 500 10 PHE A 489 102.32 -162.98 REMARK 500 10 ARG A 492 19.27 -149.69 REMARK 500 11 LEU A 475 -50.05 -122.53 REMARK 500 11 ARG A 492 14.98 -151.58 REMARK 500 11 TYR A 535 77.74 -117.43 REMARK 500 12 ARG A 492 21.93 -146.81 REMARK 500 12 SER A 495 20.31 -141.76 REMARK 500 13 ALA A 479 42.10 -145.87 REMARK 500 13 ARG A 492 18.57 -147.77 REMARK 500 13 SER A 494 -48.51 -169.83 REMARK 500 13 TYR A 535 78.44 -119.04 REMARK 500 14 ARG A 492 16.60 -147.09 REMARK 500 14 SER A 494 -44.50 -168.86 REMARK 500 14 ASP A 510 16.97 -140.55 REMARK 500 15 ARG A 492 21.56 -150.92 REMARK 500 16 PHE A 489 102.20 -161.68 REMARK 500 16 ARG A 492 10.86 -148.03 REMARK 500 16 SER A 494 103.53 -165.68 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15710 RELATED DB: BMRB DBREF 2K2M A 481 536 UNP Q8TE68 ES8L1_HUMAN 481 536 SEQADV 2K2M GLY A 473 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M PRO A 474 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M LEU A 475 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M GLY A 476 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M SER A 477 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M GLY A 478 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M ALA A 479 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M LEU A 480 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M ALA A 537 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M ALA A 538 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M ALA A 539 UNP Q8TE68 EXPRESSION TAG SEQADV 2K2M SER A 540 UNP Q8TE68 EXPRESSION TAG SEQRES 1 A 68 GLY PRO LEU GLY SER GLY ALA LEU LYS TRP VAL LEU CYS SEQRES 2 A 68 ASN TYR ASP PHE GLN ALA ARG ASN SER SER GLU LEU SER SEQRES 3 A 68 VAL LYS GLN ARG ASP VAL LEU GLU VAL LEU ASP ASP SER SEQRES 4 A 68 ARG LYS TRP TRP LYS VAL ARG ASP PRO ALA GLY GLN GLU SEQRES 5 A 68 GLY TYR VAL PRO TYR ASN ILE LEU THR PRO TYR PRO ALA SEQRES 6 A 68 ALA ALA SER SHEET 1 A 5 GLY A 525 PRO A 528 0 SHEET 2 A 5 TRP A 514 ARG A 518 -1 N TRP A 515 O VAL A 527 SHEET 3 A 5 VAL A 504 ASP A 509 -1 N LEU A 508 O LYS A 516 SHEET 4 A 5 TRP A 482 CYS A 485 -1 N VAL A 483 O LEU A 505 SHEET 5 A 5 LEU A 532 PRO A 534 -1 O THR A 533 N LEU A 484 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1