HEADER MEMBRANE PROTEIN, TRANSPORT PROTEIN 17-APR-08 2K32 TITLE TRUNCATED ACRA FROM CAMPYLOBACTER JEJUNI FOR GLYCOSYLATION STUDIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRUNCATED PROTEIN (UNP RESIDUES: 61-96,118-145,167-210); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 GENE: CMEA; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET24B KEYWDS NONGLYCOSYLATED ACRA, MEMBRANE PROTEIN, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.SLYNKO,M.SCHUBERT,S.NUMAO,M.KOWARIK,M.AEBI,F.ALLAIN REVDAT 3 08-MAY-24 2K32 1 REMARK REVDAT 2 20-OCT-21 2K32 1 REMARK SEQADV REVDAT 1 03-FEB-09 2K32 0 JRNL AUTH V.SLYNKO,M.SCHUBERT,S.NUMAO,M.KOWARIK,M.AEBI,F.H.ALLAIN JRNL TITL NMR STRUCTURE DETERMINATION OF A SEGMENTALLY LABELED JRNL TITL 2 GLYCOPROTEIN USING IN VITRO GLYCOSYLATION. JRNL REF J.AM.CHEM.SOC. V. 131 1274 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19154179 JRNL DOI 10.1021/JA808682V REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000100613. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] ACRA(61 REMARK 210 -210DD), 50 MM POTASSIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O; 1 MM REMARK 210 [U-100% 13C; U-100% 15N] ACRA(61- REMARK 210 210DD), 50 MM POTASSIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O; 1 MM REMARK 210 [U-100% 15N] ACRA(61-210DD), 50 REMARK 210 MM POTASSIUM PHOSPHATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ; 600 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ATNOSCANDID, SPARKY, TOPSPIN 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 VAL A 2 CA - CB - CG1 ANGL. DEV. = 9.6 DEGREES REMARK 500 1 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.5 DEGREES REMARK 500 3 VAL A 2 CA - CB - CG1 ANGL. DEV. = 9.8 DEGREES REMARK 500 3 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 VAL A 2 CA - CB - CG1 ANGL. DEV. = 9.5 DEGREES REMARK 500 4 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 5 VAL A 2 CA - CB - CG1 ANGL. DEV. = 9.7 DEGREES REMARK 500 7 VAL A 2 CA - CB - CG1 ANGL. DEV. = 9.0 DEGREES REMARK 500 8 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 9 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 9 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 10 VAL A 2 CA - CB - CG1 ANGL. DEV. = 9.4 DEGREES REMARK 500 10 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.7 DEGREES REMARK 500 11 VAL A 2 CA - CB - CG1 ANGL. DEV. = 9.0 DEGREES REMARK 500 11 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.2 DEGREES REMARK 500 11 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 12 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.4 DEGREES REMARK 500 12 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 13 VAL A 2 CA - CB - CG1 ANGL. DEV. = 9.0 DEGREES REMARK 500 13 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.3 DEGREES REMARK 500 13 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 14 VAL A 2 CA - CB - CG1 ANGL. DEV. = 9.5 DEGREES REMARK 500 14 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.3 DEGREES REMARK 500 15 VAL A 2 CA - CB - CG1 ANGL. DEV. = 9.6 DEGREES REMARK 500 15 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.8 DEGREES REMARK 500 15 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 16 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.4 DEGREES REMARK 500 17 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 18 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.9 DEGREES REMARK 500 18 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 19 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.5 DEGREES REMARK 500 19 LEU A 82 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 20 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 20 VAL A 99 CA - CB - CG2 ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 19 108.02 -59.96 REMARK 500 1 ASP A 21 -161.25 -77.41 REMARK 500 1 LYS A 24 -179.82 -69.51 REMARK 500 1 LYS A 25 41.41 -67.94 REMARK 500 1 GLN A 34 28.83 -71.02 REMARK 500 1 ASP A 35 -85.56 37.10 REMARK 500 1 PHE A 48 -31.51 -164.92 REMARK 500 1 GLN A 55 -6.38 -59.36 REMARK 500 1 TYR A 58 3.83 -66.68 REMARK 500 1 THR A 64 -138.43 46.23 REMARK 500 1 GLU A 95 121.16 60.25 REMARK 500 1 ALA A 107 -28.04 -140.86 REMARK 500 1 ASP A 108 30.04 -150.76 REMARK 500 1 SER A 110 -35.50 -165.56 REMARK 500 1 HIS A 112 1.76 -68.43 REMARK 500 2 ALA A 19 98.30 -61.30 REMARK 500 2 ASP A 21 -169.71 -77.83 REMARK 500 2 LYS A 25 44.38 -53.61 REMARK 500 2 ALA A 46 12.44 -143.62 REMARK 500 2 GLN A 55 0.71 -59.19 REMARK 500 2 ALA A 63 21.47 -144.30 REMARK 500 2 ILE A 85 104.60 -56.03 REMARK 500 2 GLU A 95 126.06 61.45 REMARK 500 2 VAL A 97 172.35 177.18 REMARK 500 2 LEU A 102 -164.47 52.75 REMARK 500 2 ALA A 107 -14.34 -141.75 REMARK 500 3 ALA A 19 108.83 -59.46 REMARK 500 3 LYS A 24 -177.95 -69.61 REMARK 500 3 LYS A 25 33.71 -59.08 REMARK 500 3 ILE A 53 -59.68 73.46 REMARK 500 3 GLN A 55 7.76 -61.30 REMARK 500 3 ALA A 63 67.34 -175.99 REMARK 500 3 ILE A 85 103.34 -56.44 REMARK 500 3 GLU A 95 128.44 60.75 REMARK 500 3 VAL A 97 160.54 177.93 REMARK 500 3 HIS A 113 -8.11 58.96 REMARK 500 4 ALA A 19 104.21 -59.06 REMARK 500 4 LYS A 25 57.74 -50.70 REMARK 500 4 PHE A 48 11.28 -152.01 REMARK 500 4 GLN A 55 -6.15 -54.37 REMARK 500 4 THR A 64 114.51 -35.87 REMARK 500 4 LEU A 65 27.15 41.36 REMARK 500 4 ILE A 85 104.98 -57.28 REMARK 500 4 GLU A 95 127.74 59.89 REMARK 500 4 VAL A 97 177.78 179.63 REMARK 500 4 TYR A 106 -22.62 63.27 REMARK 500 4 HIS A 113 -34.18 -139.51 REMARK 500 5 LYS A 25 75.35 -52.22 REMARK 500 5 ASP A 35 93.66 56.86 REMARK 500 5 GLN A 36 4.75 -59.15 REMARK 500 REMARK 500 THIS ENTRY HAS 227 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 88 0.08 SIDE CHAIN REMARK 500 2 TYR A 88 0.06 SIDE CHAIN REMARK 500 3 TYR A 88 0.06 SIDE CHAIN REMARK 500 5 TYR A 88 0.08 SIDE CHAIN REMARK 500 6 TYR A 88 0.06 SIDE CHAIN REMARK 500 7 TYR A 88 0.06 SIDE CHAIN REMARK 500 10 TYR A 88 0.11 SIDE CHAIN REMARK 500 11 TYR A 88 0.11 SIDE CHAIN REMARK 500 12 TYR A 88 0.11 SIDE CHAIN REMARK 500 13 TYR A 88 0.09 SIDE CHAIN REMARK 500 14 TYR A 88 0.10 SIDE CHAIN REMARK 500 15 TYR A 88 0.11 SIDE CHAIN REMARK 500 16 TYR A 88 0.10 SIDE CHAIN REMARK 500 18 TYR A 88 0.11 SIDE CHAIN REMARK 500 19 TYR A 88 0.09 SIDE CHAIN REMARK 500 20 TYR A 88 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15735 RELATED DB: BMRB REMARK 900 RELATED ID: 2K33 RELATED DB: PDB DBREF 2K32 A 1 36 UNP Q8RTE5 Q8RTE5_CAMJE 61 96 DBREF 2K32 A 37 64 UNP Q8RTE5 Q8RTE5_CAMJE 118 145 DBREF 2K32 A 65 108 UNP Q8RTE5 Q8RTE5_CAMJE 167 210 SEQADV 2K32 GLN A 36 UNP Q8RTE5 LYS 96 ENGINEERED MUTATION SEQADV 2K32 GLN A 50 UNP Q8RTE5 LYS 131 ENGINEERED MUTATION SEQADV 2K32 GLY A 109 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K32 SER A 110 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K32 HIS A 111 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K32 HIS A 112 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K32 HIS A 113 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K32 HIS A 114 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K32 HIS A 115 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K32 HIS A 116 UNP Q8RTE5 EXPRESSION TAG SEQRES 1 A 116 ASP VAL ILE ILE LYS PRO GLN VAL SER GLY VAL ILE VAL SEQRES 2 A 116 ASN LYS LEU PHE LYS ALA GLY ASP LYS VAL LYS LYS GLY SEQRES 3 A 116 GLN THR LEU PHE ILE ILE GLU GLN ASP GLN ALA SER LYS SEQRES 4 A 116 ASP PHE ASN ARG SER LYS ALA LEU PHE SER GLN SER ALA SEQRES 5 A 116 ILE SER GLN LYS GLU TYR ASP SER SER LEU ALA THR LEU SEQRES 6 A 116 ASP HIS THR GLU ILE LYS ALA PRO PHE ASP GLY THR ILE SEQRES 7 A 116 GLY ASP ALA LEU VAL ASN ILE GLY ASP TYR VAL SER ALA SEQRES 8 A 116 SER THR THR GLU LEU VAL ARG VAL THR ASN LEU ASN PRO SEQRES 9 A 116 ILE TYR ALA ASP GLY SER HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 38 PHE A 48 1 11 HELIX 2 2 SER A 49 ALA A 52 5 4 HELIX 3 3 ASP A 59 THR A 64 1 6 HELIX 4 4 PRO A 104 GLY A 109 1 6 HELIX 5 5 HIS A 111 HIS A 115 5 5 SHEET 1 A 4 VAL A 2 ILE A 4 0 SHEET 2 A 4 VAL A 97 THR A 100 -1 O VAL A 99 N VAL A 2 SHEET 3 A 4 GLY A 76 ILE A 78 -1 N THR A 77 O THR A 100 SHEET 4 A 4 LYS A 22 VAL A 23 -1 N VAL A 23 O GLY A 76 SHEET 1 B 4 HIS A 67 LYS A 71 0 SHEET 2 B 4 THR A 28 GLU A 33 -1 N LEU A 29 O ILE A 70 SHEET 3 B 4 GLY A 10 LYS A 15 -1 N VAL A 13 O ILE A 31 SHEET 4 B 4 TYR A 88 VAL A 89 -1 O VAL A 89 N GLY A 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1