HEADER MEMBRANE PROTEIN, TRANSPORT PROTEIN 18-APR-08 2K33 TITLE SOLUTION STRUCTURE OF AN N-GLYCOSYLATED PROTEIN USING IN VITRO TITLE 2 GLYCOSYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACRA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 GENE: CMEA; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE); SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET24B KEYWDS GLYCOPROTEIN, N-GLYCAN, GLYCOSYLATION, MEMBRANE PROTEIN, TRANSPORT KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.SLYNKO,M.SCHUBERT,S.NUMAO,M.KOWARIK,M.AEBI,F.H.-T.ALLAIN REVDAT 4 06-NOV-24 2K33 1 REMARK REVDAT 3 20-OCT-21 2K33 1 SEQADV HETSYN REVDAT 2 29-JUL-20 2K33 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 HETSYN LINK SITE ATOM REVDAT 1 03-FEB-09 2K33 0 JRNL AUTH V.SLYNKO,M.SCHUBERT,S.NUMAO,M.KOWARIK,M.AEBI,F.H.ALLAIN JRNL TITL NMR STRUCTURE DETERMINATION OF A SEGMENTALLY LABELED JRNL TITL 2 GLYCOPROTEIN USING IN VITRO GLYCOSYLATION. JRNL REF J.AM.CHEM.SOC. V. 131 1274 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19154179 JRNL DOI 10.1021/JA808682V REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.0, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000100614. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] ACRA, 1 MM REMARK 210 SUGAR (7-MER), 50 MM POTASSIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O; 1 MM REMARK 210 [U-100% 13C; U-100% 15N] ACRA, 1 REMARK 210 MM SUGAR (7-MER), 50 MM REMARK 210 POTASSIUM PHOSPHATE, 95% H2O/5% REMARK 210 D2O; 1 MM [U-100% 15N] ACRA, 1 REMARK 210 MM SUGAR (7-MER), 50 MM REMARK 210 POTASSIUM PHOSPHATE, 100% D2O; 1 REMARK 210 MM [U-100% 13C; U-100% 15N] ACRA, REMARK 210 1 MM SUGAR (7-MER), 50 MM REMARK 210 POTASSIUM PHOSPHATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY; 2D 13C FILTERED- REMARK 210 FILTERED NOESY; 2D 15N FILTERED- REMARK 210 FILTERED NOESY; 3D 13C EDITED- REMARK 210 FILTERED NOESY; 2D 13C FILTERED- REMARK 210 EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 6 -167.12 -69.84 REMARK 500 1 LEU A 16 56.17 -100.41 REMARK 500 1 LYS A 25 97.53 -57.42 REMARK 500 1 LEU A 29 -37.89 -136.52 REMARK 500 1 ASP A 35 46.33 -91.30 REMARK 500 1 GLN A 36 94.54 -173.16 REMARK 500 1 SER A 38 165.08 67.40 REMARK 500 1 ASP A 40 39.78 -159.46 REMARK 500 1 PHE A 41 -65.15 -133.29 REMARK 500 1 SER A 44 160.40 62.20 REMARK 500 1 GLN A 50 -163.34 -177.53 REMARK 500 1 GLU A 57 19.78 -152.09 REMARK 500 1 TYR A 58 177.04 -55.16 REMARK 500 1 THR A 64 -174.61 -179.83 REMARK 500 1 ALA A 91 -154.01 -60.06 REMARK 500 1 GLU A 95 52.04 -100.92 REMARK 500 1 ASN A 101 165.62 69.25 REMARK 500 1 LEU A 102 165.07 64.24 REMARK 500 1 PRO A 104 96.15 -69.79 REMARK 500 1 ALA A 107 73.15 -174.99 REMARK 500 1 ASP A 108 -169.79 -111.53 REMARK 500 1 SER A 110 -62.99 -94.83 REMARK 500 1 HIS A 111 -174.98 -171.33 REMARK 500 2 LEU A 16 50.25 -96.18 REMARK 500 2 ASP A 21 -169.96 -107.79 REMARK 500 2 LYS A 25 92.94 -57.21 REMARK 500 2 ASP A 35 26.95 -162.34 REMARK 500 2 PHE A 41 -80.46 -102.11 REMARK 500 2 ASN A 42 136.00 179.45 REMARK 500 2 ALA A 46 107.31 -162.33 REMARK 500 2 SER A 49 -49.20 -175.48 REMARK 500 2 GLN A 50 74.06 -168.77 REMARK 500 2 ASP A 59 -172.85 -179.27 REMARK 500 2 PHE A 74 10.98 -149.24 REMARK 500 2 ASP A 75 165.57 76.30 REMARK 500 2 ASN A 84 -169.62 -121.20 REMARK 500 2 ALA A 91 -85.59 -67.21 REMARK 500 2 ASN A 101 95.83 64.08 REMARK 500 2 PRO A 104 97.95 -69.81 REMARK 500 2 TYR A 106 28.88 -164.06 REMARK 500 2 HIS A 111 89.90 59.12 REMARK 500 2 HIS A 114 164.96 62.54 REMARK 500 3 LEU A 16 48.87 -97.32 REMARK 500 3 LYS A 25 96.50 -56.77 REMARK 500 3 LEU A 29 -38.79 -135.65 REMARK 500 3 ASP A 35 33.68 177.14 REMARK 500 3 GLN A 36 -168.99 49.99 REMARK 500 3 ALA A 37 -85.45 -66.14 REMARK 500 3 SER A 38 41.82 179.82 REMARK 500 3 ASP A 40 -30.60 -139.86 REMARK 500 REMARK 500 THIS ENTRY HAS 441 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15735 RELATED DB: BMRB REMARK 900 NONGLYCOSYLATED FORM REMARK 900 RELATED ID: 2K32 RELATED DB: PDB REMARK 900 NONGLYCOSYLATED FORM REMARK 900 RELATED ID: 15737 RELATED DB: BMRB DBREF 2K33 A 1 36 UNP Q8RTE5 Q8RTE5_CAMJE 61 96 DBREF 2K33 A 37 64 UNP Q8RTE5 Q8RTE5_CAMJE 118 145 DBREF 2K33 A 65 108 UNP Q8RTE5 Q8RTE5_CAMJE 167 210 SEQADV 2K33 GLN A 36 UNP Q8RTE5 LYS 96 ENGINEERED MUTATION SEQADV 2K33 GLN A 50 UNP Q8RTE5 LYS 131 ENGINEERED MUTATION SEQADV 2K33 GLY A 109 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K33 SER A 110 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K33 HIS A 111 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K33 HIS A 112 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K33 HIS A 113 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K33 HIS A 114 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K33 HIS A 115 UNP Q8RTE5 EXPRESSION TAG SEQADV 2K33 HIS A 116 UNP Q8RTE5 EXPRESSION TAG SEQRES 1 A 116 ASP VAL ILE ILE LYS PRO GLN VAL SER GLY VAL ILE VAL SEQRES 2 A 116 ASN LYS LEU PHE LYS ALA GLY ASP LYS VAL LYS LYS GLY SEQRES 3 A 116 GLN THR LEU PHE ILE ILE GLU GLN ASP GLN ALA SER LYS SEQRES 4 A 116 ASP PHE ASN ARG SER LYS ALA LEU PHE SER GLN SER ALA SEQRES 5 A 116 ILE SER GLN LYS GLU TYR ASP SER SER LEU ALA THR LEU SEQRES 6 A 116 ASP HIS THR GLU ILE LYS ALA PRO PHE ASP GLY THR ILE SEQRES 7 A 116 GLY ASP ALA LEU VAL ASN ILE GLY ASP TYR VAL SER ALA SEQRES 8 A 116 SER THR THR GLU LEU VAL ARG VAL THR ASN LEU ASN PRO SEQRES 9 A 116 ILE TYR ALA ASP GLY SER HIS HIS HIS HIS HIS HIS MODRES 2K33 ASN A 42 ASN GLYCOSYLATION SITE HET B6D B 1 32 HET A2G B 2 27 HET A2G B 3 27 HET A2G B 4 26 HET A2G B 5 27 HET A2G B 6 27 HET BGC B 7 22 HETNAM B6D 2,4-BISACETAMIDO-2,4,6-TRIDEOXY-BETA-D-GLUCOPYRANOSE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN B6D 2,4-BIS(ACETYLAMINO)-2,4,6-TRIDEOXY-BETA-D- HETSYN 2 B6D GLUCOPYRANOSE; 2,4-DIACETAMIDO-2,4,6-TRIDEOXY-BETA-D- HETSYN 3 B6D GLUCOPYRANOSE; BACILLOSAMINE; 2,4-BISACETAMIDO-2,4,6- HETSYN 4 B6D TRIDEOXY-BETA-D-GLUCOSE; 2,4-BISACETAMIDO-2,4,6- HETSYN 5 B6D TRIDEOXY-D-GLUCOSE; 2,4-BISACETAMIDO-2,4,6-TRIDEOXY- HETSYN 6 B6D GLUCOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 B6D C10 H18 N2 O5 FORMUL 2 A2G 5(C8 H15 N O6) FORMUL 2 BGC C6 H12 O6 SHEET 1 A 4 VAL A 2 ILE A 4 0 SHEET 2 A 4 VAL A 97 THR A 100 -1 O VAL A 99 N VAL A 2 SHEET 3 A 4 GLY A 76 ILE A 78 -1 N THR A 77 O THR A 100 SHEET 4 A 4 LYS A 22 VAL A 23 -1 N VAL A 23 O GLY A 76 SHEET 1 B 4 HIS A 67 LYS A 71 0 SHEET 2 B 4 THR A 28 GLU A 33 -1 N ILE A 32 O THR A 68 SHEET 3 B 4 GLY A 10 ASN A 14 -1 N VAL A 13 O ILE A 31 SHEET 4 B 4 TYR A 88 VAL A 89 -1 O VAL A 89 N GLY A 10 LINK ND2 ASN A 42 C1 B6D B 1 1555 1555 1.39 LINK O3 B6D B 1 C1 A2G B 2 1555 1555 1.49 LINK O4 A2G B 2 C1 A2G B 3 1555 1555 1.49 LINK O4 A2G B 3 C1 A2G B 4 1555 1555 1.49 LINK O4 A2G B 4 C1 A2G B 5 1555 1555 1.49 LINK O3 A2G B 4 C1 BGC B 7 1555 1555 1.47 LINK O4 A2G B 5 C1 A2G B 6 1555 1555 1.49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1