HEADER VIRAL PROTEIN 22-APR-08 2K36 TITLE STRUCTURE ENSEMBLE BACKBONE AND SIDE-CHAIN 1H, 13C, AND 15N CHEMICAL TITLE 2 SHIFT ASSIGNMENTS, 1H-15N RDCS AND 1H-1H NOE RESTRAINTS FOR PROTEIN TITLE 3 K7 FROM THE VACCINIA VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN K7; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 STRAIN: WR WESTERN RESERVE / WR; SOURCE 5 GENE: K7R; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15; SOURCE 10 OTHER_DETAILS: THE PET15 VECTOR WAS MODIFIED TO REPLACE THE THROMBIN SOURCE 11 CLEAVAGE SITE WITH AN RTEV CLEAVAGE SITE KEYWDS PROTEIN, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR A.P.KALVERDA,G.S.THOMPSON,A.VOGEL,M.SCHR DER,A.G.BOWIE,A.R.KHAN, AUTHOR 2 S.W.HOMANS REVDAT 5 19-FEB-20 2K36 1 REMARK REVDAT 4 09-JUN-09 2K36 1 REVDAT REVDAT 3 24-FEB-09 2K36 1 VERSN REVDAT 2 03-FEB-09 2K36 1 JRNL REVDAT 1 28-OCT-08 2K36 0 JRNL AUTH A.P.KALVERDA,G.S.THOMPSON,A.VOGEL,M.SCHRODER,A.G.BOWIE, JRNL AUTH 2 A.R.KHAN,S.W.HOMANS JRNL TITL POXVIRUS K7 PROTEIN ADOPTS A BCL-2 FOLD: BIOCHEMICAL MAPPING JRNL TITL 2 OF ITS INTERACTIONS WITH HUMAN DEAD BOX RNA HELICASE DDX3. JRNL REF J.MOL.BIOL. V. 385 843 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 18845156 JRNL DOI 10.1016/J.JMB.2008.09.048 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, ARIA 2.1 REMARK 3 AUTHORS : VARIAN (VNMR), LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PASD/MARVIN WITH TALOS RESTRAINTS WITH REMARK 3 P>= 0.9 CARRIED OVER TO ARIA 2.1 REFINEMENT CALCULATION, ARIA REMARK 3 2.1 WITH TALOS NOE AND RDC (VEAN/SANI) RESTRAINTS ALL COOLING REMARK 3 STEPS EXENDED BY A FACTOR OF 4 FROM DEFAULTS REMARK 4 REMARK 4 2K36 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000100617. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 122.5 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-13C; U-15N] K7D8, 10 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 10 MM DTT, 0.1 REMARK 210 MM DSS, 90% H2O/10% D2O; 0.8 MM REMARK 210 [U-15N] K7D8, 10 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.1 MM DSS, REMARK 210 90% H2O/10% D2O; 0.8 MM [U-15N] REMARK 210 K7D8, 10 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 0.1 MM DSS, 12 MG/ML PF1 REMARK 210 PHAGE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D HNHA; 3D 1H-15N REMARK 210 NOESY; 2D 1H-13C CONSTANT TIME REMARK 210 AROMATIC SELECTED HSQC; 3D HCCH- REMARK 210 TOCSY; 2D HB(CBCGCD)HD; 2D REMARK 210 HB(CBCGCDCE)HE; 3D 1H-13C NOESY; REMARK 210 2D J MODULATED 1H-15N HSQC; 2D REMARK 210 1H-(13C)-1H AROMATIC OPTIMISED REMARK 210 13C FILTERED (HSQC) NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.5 REV 2006.184.15.37, REMARK 210 CCPN_ANALYSIS 1.0.9-1.0.15, X- REMARK 210 PLOR NIH 2.17, NMRVIEW 5.22 REMARK 210 METHOD USED : SIMULATED ANNEALING, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY (TANGLED STRUCTURES REMARK 210 EXCLUDED) REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION OF TALOS REMARK 210 DIHEDRAL, 1H-1H NOE AND RESIDUAL DIPOLAR COUPLING RESTRAINTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA GLU A 8 HE2 LYS A 45 1.32 REMARK 500 HZ1 LYS A 72 OE1 GLU A 75 1.56 REMARK 500 HH21 ARG A 23 OD2 ASP A 134 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 8 -71.42 -134.44 REMARK 500 1 ALA A 10 83.52 -57.58 REMARK 500 1 ASP A 18 -22.61 78.06 REMARK 500 1 CYS A 21 -168.47 -106.64 REMARK 500 1 ILE A 41 -62.82 -99.04 REMARK 500 1 LYS A 45 -135.90 -74.22 REMARK 500 1 CYS A 50 -170.42 179.82 REMARK 500 1 ILE A 87 148.52 178.31 REMARK 500 1 LYS A 91 -80.04 -149.22 REMARK 500 1 HIS A 93 -81.60 -88.70 REMARK 500 1 SER A 118 -35.33 167.74 REMARK 500 1 GLU A 119 -50.93 69.53 REMARK 500 2 ALA A 10 74.15 -64.24 REMARK 500 2 ASP A 18 -24.04 72.62 REMARK 500 2 CYS A 21 -163.70 -113.83 REMARK 500 2 ILE A 41 -64.25 -91.17 REMARK 500 2 LYS A 45 -132.67 -72.41 REMARK 500 2 CYS A 50 -168.73 -171.69 REMARK 500 2 TYR A 67 -72.04 -75.95 REMARK 500 2 ASP A 84 -79.31 -154.61 REMARK 500 2 HIS A 85 -162.52 45.01 REMARK 500 2 LYS A 91 -73.12 -148.65 REMARK 500 2 VAL A 92 39.43 -91.28 REMARK 500 2 HIS A 93 -156.64 -106.15 REMARK 500 2 LYS A 116 76.06 60.63 REMARK 500 2 SER A 118 89.79 58.13 REMARK 500 2 LEU A 125 -48.78 74.54 REMARK 500 3 ALA A 2 48.79 -84.03 REMARK 500 3 LYS A 4 35.06 -89.85 REMARK 500 3 GLU A 8 -73.39 -130.67 REMARK 500 3 ASP A 18 -23.99 74.56 REMARK 500 3 CYS A 21 -166.89 -102.00 REMARK 500 3 ILE A 41 -65.48 -94.00 REMARK 500 3 LYS A 45 -137.19 -76.46 REMARK 500 3 CYS A 50 -166.24 -172.85 REMARK 500 3 TYR A 67 -71.63 -76.34 REMARK 500 3 MET A 80 -17.03 -48.70 REMARK 500 3 HIS A 85 -174.24 66.48 REMARK 500 3 TYR A 86 166.79 66.27 REMARK 500 3 ILE A 87 -157.76 -147.38 REMARK 500 3 LYS A 91 -66.65 -107.01 REMARK 500 3 VAL A 92 49.57 -79.22 REMARK 500 3 HIS A 93 -84.78 -119.56 REMARK 500 3 LYS A 116 81.47 63.96 REMARK 500 3 SER A 118 161.24 83.83 REMARK 500 3 ARG A 121 39.94 -96.14 REMARK 500 3 PHE A 122 176.72 65.51 REMARK 500 3 ILE A 128 -76.55 -96.31 REMARK 500 4 LYS A 4 21.80 -141.55 REMARK 500 4 LEU A 5 45.82 -109.92 REMARK 500 REMARK 500 THIS ENTRY HAS 248 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15740 RELATED DB: BMRB DBREF 2K36 A 1 149 UNP P68466 VK07_VACCV 1 149 SEQRES 1 A 149 MET ALA THR LYS LEU ASP TYR GLU ASP ALA VAL PHE TYR SEQRES 2 A 149 PHE VAL ASP ASP ASP LYS ILE CYS SER ARG ASP SER ILE SEQRES 3 A 149 ILE ASP LEU ILE ASP GLU TYR ILE THR TRP ARG ASN HIS SEQRES 4 A 149 VAL ILE VAL PHE ASN LYS ASP ILE THR SER CYS GLY ARG SEQRES 5 A 149 LEU TYR LYS GLU LEU MET LYS PHE ASP ASP VAL ALA ILE SEQRES 6 A 149 ARG TYR TYR GLY ILE ASP LYS ILE ASN GLU ILE VAL GLU SEQRES 7 A 149 ALA MET SER GLU GLY ASP HIS TYR ILE ASN PHE THR LYS SEQRES 8 A 149 VAL HIS ASP GLN GLU SER LEU PHE ALA THR ILE GLY ILE SEQRES 9 A 149 CYS ALA LYS ILE THR GLU HIS TRP GLY TYR LYS LYS ILE SEQRES 10 A 149 SER GLU SER ARG PHE GLN SER LEU GLY ASN ILE THR ASP SEQRES 11 A 149 LEU MET THR ASP ASP ASN ILE ASN ILE LEU ILE LEU PHE SEQRES 12 A 149 LEU GLU LYS LYS LEU ASN HELIX 1 1 TYR A 13 ASP A 17 5 5 HELIX 2 2 SER A 22 PHE A 43 1 22 HELIX 3 3 GLY A 51 TYR A 68 1 18 HELIX 4 4 GLY A 69 GLU A 82 1 14 HELIX 5 5 ASP A 94 TRP A 112 1 19 HELIX 6 6 THR A 133 LYS A 146 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1