HEADER STRUCTURAL PROTEIN 30-APR-08 2K3B TITLE SEEING THE INVISIBLE: STRUCTURES OF EXCITED PROTEIN STATES BY TITLE 2 RELAXATION DISPERSION NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 GENE: ABP1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET32B KEYWDS CPMG, ABP1P, ARK1P, INVISIBLE STATE, ACETYLATION, ACTIN-BINDING, KEYWDS 2 CYTOPLASM, CYTOSKELETON, PHOSPHOPROTEIN, SH3 DOMAIN, STRUCTURAL KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR P.VALLURUPALLI,F.D.HANSEN,L.E.KAY REVDAT 4 16-MAR-22 2K3B 1 REMARK SEQADV REVDAT 3 24-FEB-09 2K3B 1 VERSN REVDAT 2 26-AUG-08 2K3B 1 JRNL REVDAT 1 29-JUL-08 2K3B 0 JRNL AUTH P.VALLURUPALLI,D.F.HANSEN,L.E.KAY JRNL TITL STRUCTURES OF INVISIBLE, EXCITED PROTEIN STATES BY JRNL TITL 2 RELAXATION DISPERSION NMR SPECTROSCOPY JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 11766 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18701719 JRNL DOI 10.1073/PNAS.0804221105 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.19, X-PLOR NIH 2.19 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K3B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000100622. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : ~0.150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ~1.5 MM [90 % U 2H; ~100% U 15N] REMARK 210 ABP1P, ~0.105 MM [90% U 2H; ~100% REMARK 210 U 15N] ARK1P, 90% H2O/10% D2O; ~ REMARK 210 1.5 MM [90 % U 2H; ~100% U 15N] REMARK 210 ABP1P, ~0.105 MM ARK1P, 90% H2O/ REMARK 210 10% D2O; ~1.5 MM [90 % U 2H; ~ REMARK 210 100% U 15N; 13CO LABELED] ABP1P, REMARK 210 ~0.105 MM ARK1P, 90% H2O/10% D2O; REMARK 210 ~1.5 MM [90 % U 2H; ~100% U 15N; REMARK 210 13CA LABELED] ABP1P, ~0.105 MM REMARK 210 ARK1P, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N CT-CW,TROSY,ANTI-TROSY CPMG; REMARK 210 13CO CT-INPHASE,TROSY,ANTI-TROSY REMARK 210 CPMG; 13CA CT-CW,TROSY,ANTI- REMARK 210 TROSY CPMG REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 960 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 35 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 2 ASP A 35 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 3 ASP A 35 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 4 ASP A 35 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 5 ASP A 35 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 6 ASP A 35 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 7 ASP A 35 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 8 ASP A 35 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 9 ASP A 35 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 10 ASP A 35 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 23 -8.92 80.39 REMARK 500 1 ASP A 44 -0.72 -145.87 REMARK 500 2 ASN A 23 -8.92 80.39 REMARK 500 2 ASP A 44 -0.71 -145.83 REMARK 500 3 ASN A 23 -8.92 80.42 REMARK 500 3 ASP A 44 -0.70 -145.94 REMARK 500 4 ASN A 23 -8.92 80.50 REMARK 500 4 ASP A 44 -0.71 -145.83 REMARK 500 5 ASN A 23 -8.92 80.39 REMARK 500 5 ASP A 44 -0.62 -145.85 REMARK 500 6 ASN A 23 -8.94 80.43 REMARK 500 6 ASP A 44 -0.63 -145.91 REMARK 500 7 ASN A 23 -8.85 80.31 REMARK 500 7 ASP A 44 -0.72 -145.95 REMARK 500 8 ASN A 23 -8.93 80.38 REMARK 500 8 ASP A 44 -0.80 -145.82 REMARK 500 9 ASN A 23 -8.92 80.45 REMARK 500 9 ASP A 44 -0.75 -145.86 REMARK 500 10 ASN A 23 -8.96 80.41 REMARK 500 10 ASP A 44 -0.66 -145.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 2K3B A 2 59 UNP P15891 ABP1_YEAST 535 592 SEQADV 2K3B GLY A -2 UNP P15891 EXPRESSION TAG SEQADV 2K3B ALA A -1 UNP P15891 EXPRESSION TAG SEQADV 2K3B MET A 0 UNP P15891 EXPRESSION TAG SEQADV 2K3B ALA A 1 UNP P15891 EXPRESSION TAG SEQRES 1 A 62 GLY ALA MET ALA PRO TRP ALA THR ALA GLU TYR ASP TYR SEQRES 2 A 62 ASP ALA ALA GLU ASP ASN GLU LEU THR PHE VAL GLU ASN SEQRES 3 A 62 ASP LYS ILE ILE ASN ILE GLU PHE VAL ASP ASP ASP TRP SEQRES 4 A 62 TRP LEU GLY GLU LEU GLU LYS ASP GLY SER LYS GLY LEU SEQRES 5 A 62 PHE PRO SER ASN TYR VAL SER LEU GLY ASN SHEET 1 A 5 LYS A 47 PRO A 51 0 SHEET 2 A 5 TRP A 36 LEU A 41 -1 N TRP A 37 O PHE A 50 SHEET 3 A 5 LYS A 25 GLU A 30 -1 N ILE A 27 O GLU A 40 SHEET 4 A 5 ALA A 4 ALA A 6 -1 N ALA A 4 O ILE A 26 SHEET 5 A 5 VAL A 55 LEU A 57 -1 O SER A 56 N THR A 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1