HEADER    TRANSCRIPTION REGULATOR                 19-MAY-08   2K3X              
TITLE     SOLUTION STRUCTURE OF EAF3 CHROMO BARREL DOMAIN                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: CHROMATIN MODIFICATION-RELATED PROTEIN EAF3;               
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 1 TO 113;                                     
COMPND   5 SYNONYM: ESA1-ASSOCIATED FACTOR 3;                                   
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;                       
SOURCE   3 ORGANISM_COMMON: BAKER'S YEAST;                                      
SOURCE   4 ORGANISM_TAXID: 4932;                                                
SOURCE   5 GENE: EAF3, YPR023C, YP9367.03C;                                     
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_VECTOR: PET22B(+)                                  
KEYWDS    EAF3, CHROMO BARREL DOMAIN, HISTONE DEACETYLASE, METHYLATED HISTONES  
KEYWDS   2 H3K36 AND H3K4, CHROMATIN REGULATOR, DNA DAMAGE, DNA REPAIR,         
KEYWDS   3 NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION,    
KEYWDS   4 TRANSCRIPTION REGULATOR                                              
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    G.MER,C.XU                                                            
REVDAT   6   29-MAY-24 2K3X    1       REMARK                                   
REVDAT   5   16-MAR-22 2K3X    1       REMARK SEQADV                            
REVDAT   4   09-JUN-09 2K3X    1       REVDAT                                   
REVDAT   3   24-FEB-09 2K3X    1       VERSN                                    
REVDAT   2   02-DEC-08 2K3X    1       JRNL                                     
REVDAT   1   16-SEP-08 2K3X    0                                                
JRNL        AUTH   C.XU,G.CUI,M.V.BOTUYAN,G.MER                                 
JRNL        TITL   STRUCTURAL BASIS FOR THE RECOGNITION OF METHYLATED HISTONE   
JRNL        TITL 2 H3K36 BY THE EAF3 SUBUNIT OF HISTONE DEACETYLASE COMPLEX     
JRNL        TITL 3 RPD3S.                                                       
JRNL        REF    STRUCTURE                     V.  16  1740 2008              
JRNL        REFN                   ISSN 0969-2126                               
JRNL        PMID   18818090                                                     
JRNL        DOI    10.1016/J.STR.2008.08.008                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA, AMBER                                         
REMARK   3   AUTHORS     : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), CASE,     
REMARK   3                 DARDEN, CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO,  
REMARK   3                 ... AND KOLLM (AMBER)                                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2K3X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-08.                  
REMARK 100 THE DEPOSITION ID IS D_1000100644.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 300                                
REMARK 210  PH                             : 6.7                                
REMARK 210  IONIC STRENGTH                 : 50                                 
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.4-1.5 MM [U-100% 15N] EAF3, 20   
REMARK 210                                   MM SODIUM PHOSPHATE, 50 MM         
REMARK 210                                   SODIUM CHLORIDE, 1 MM EDTA, 2 MM   
REMARK 210                                   DTT, 800 MM UREA, 93% H2O/7% D2O;  
REMARK 210                                   0.4-1.5 MM [U-100% 13C; U-100%     
REMARK 210                                   15N] EAF3, 20 MM SODIUM            
REMARK 210                                   PHOSPHATE, 50 MM SODIUM CHLORIDE,  
REMARK 210                                   1 MM EDTA, 2 MM DTT, 800 MM        
REMARK 210                                   UREA, 93% H2O/7% D2O               
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 2D 1H-13C HSQC;    
REMARK 210                                   3D 1H-15N TOCSY; 3D 1H-15N NOESY;  
REMARK 210                                   3D HNCACB; 3D CBCA(CO)NH; 3D       
REMARK 210                                   HBHA(CO)NH; 3D HCCH-TOCSY; 3D      
REMARK 210                                   HNCO; 3D HCACO; 3D CCH-COSY; 3D    
REMARK 210                                   CCH-TOCSY; 3D C(CO)NH; 3D H(CCO)   
REMARK 210                                   NH; 2D HBCGCDCEHE; 2D HBCGCDHD;    
REMARK 210                                   3D 1H-13C NOESY; 3D 1H-13C NOESY   
REMARK 210                                   AROMATIC                           
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 700 MHZ                   
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE, NMRVIEW, SPARKY, SANE     
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-20                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     HIS A   116                                                      
REMARK 465     HIS A   117                                                      
REMARK 465     HIS A   118                                                      
REMARK 465     HIS A   119                                                      
REMARK 465     HIS A   120                                                      
REMARK 465     HIS A   121                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  1 TYR A  38   CB  -  CG  -  CD2 ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  2 TYR A  38   CB  -  CG  -  CD2 ANGL. DEV. =  -3.7 DEGREES          
REMARK 500  3 ILE A  67   CA  -  CB  -  CG1 ANGL. DEV. =  13.6 DEGREES          
REMARK 500 16 TYR A  38   CB  -  CG  -  CD2 ANGL. DEV. =  -3.8 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 LEU A   4      -47.95     64.16                                   
REMARK 500  1 LEU A  28      -63.21   -141.32                                   
REMARK 500  1 ASP A  44     -139.43   -147.92                                   
REMARK 500  1 THR A  53      -76.28     47.28                                   
REMARK 500  1 GLU A  55       96.30    -65.64                                   
REMARK 500  1 ASP A  64        5.66   -156.84                                   
REMARK 500  1 ASN A  73        6.84    -68.85                                   
REMARK 500  1 ASP A  89       99.00    -65.14                                   
REMARK 500  2 ASP A   3      -51.85   -152.97                                   
REMARK 500  2 LEU A  28      -63.66   -136.96                                   
REMARK 500  2 TYR A  38     -163.13   -109.29                                   
REMARK 500  2 ASN A  43        0.15    -68.68                                   
REMARK 500  2 GLU A  55       95.47    -25.19                                   
REMARK 500  2 ASP A  64       12.75   -158.10                                   
REMARK 500  2 ASN A  73        4.92    -67.60                                   
REMARK 500  2 ASP A  89       98.60    -68.74                                   
REMARK 500  3 ASP A   3      -23.22   -146.75                                   
REMARK 500  3 LEU A  28      -52.60   -132.34                                   
REMARK 500  3 TYR A  38     -168.77   -106.03                                   
REMARK 500  3 GLU A  55       96.28    -25.71                                   
REMARK 500  3 ASP A  64       -1.52   -163.54                                   
REMARK 500  3 SER A  66      115.47    -35.06                                   
REMARK 500  3 TRP A  88       42.52    -77.56                                   
REMARK 500  4 LEU A  28      -81.83   -120.87                                   
REMARK 500  4 TYR A  38     -168.92   -118.18                                   
REMARK 500  4 LYS A  54      172.06     54.74                                   
REMARK 500  4 ASP A  64      -27.61   -162.42                                   
REMARK 500  4 ASN A  73        4.33    -65.96                                   
REMARK 500  4 TYR A  81       96.74    -69.49                                   
REMARK 500  4 TRP A  88       25.43    -79.95                                   
REMARK 500  4 ASP A  89       98.69    -68.44                                   
REMARK 500  5 GLU A   5      -34.51   -132.62                                   
REMARK 500  5 LEU A  28      -52.00   -138.35                                   
REMARK 500  5 ASP A  44      -79.19     57.38                                   
REMARK 500  5 PRO A  46      -72.14    -59.39                                   
REMARK 500  5 ALA A  52       61.92   -105.57                                   
REMARK 500  5 LYS A  54     -173.03     48.55                                   
REMARK 500  5 ASP A  64       38.96   -167.97                                   
REMARK 500  5 GLU A  65       28.35   -146.43                                   
REMARK 500  5 ASN A  73        1.64    -67.84                                   
REMARK 500  5 ASP A  89       95.17    -67.25                                   
REMARK 500  6 LEU A   4      -50.49     64.43                                   
REMARK 500  6 LEU A  28      -73.17   -133.88                                   
REMARK 500  6 LYS A  54     -177.97     61.18                                   
REMARK 500  6 LYS A  60      150.72    -49.60                                   
REMARK 500  6 GLU A  65       26.36   -146.31                                   
REMARK 500  6 ASN A  73        2.57    -69.47                                   
REMARK 500  6 ASP A  89       96.65    -66.00                                   
REMARK 500  7 HIS A  18      -42.48   -130.88                                   
REMARK 500  7 LEU A  28      -71.22   -136.44                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     161 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  1 TYR A  23         0.07    SIDE CHAIN                              
REMARK 500  1 TYR A  81         0.07    SIDE CHAIN                              
REMARK 500  1 ARG A  96         0.11    SIDE CHAIN                              
REMARK 500  2 TYR A  23         0.07    SIDE CHAIN                              
REMARK 500  2 TYR A  94         0.10    SIDE CHAIN                              
REMARK 500  3 TYR A  81         0.11    SIDE CHAIN                              
REMARK 500  3 TYR A  94         0.07    SIDE CHAIN                              
REMARK 500  4 TYR A  81         0.10    SIDE CHAIN                              
REMARK 500  4 TYR A  94         0.06    SIDE CHAIN                              
REMARK 500  5 TYR A  81         0.06    SIDE CHAIN                              
REMARK 500  5 TYR A  94         0.08    SIDE CHAIN                              
REMARK 500  6 TYR A  81         0.07    SIDE CHAIN                              
REMARK 500  6 TYR A  94         0.07    SIDE CHAIN                              
REMARK 500  7 TYR A  81         0.08    SIDE CHAIN                              
REMARK 500  7 TYR A  94         0.14    SIDE CHAIN                              
REMARK 500  8 TYR A  81         0.08    SIDE CHAIN                              
REMARK 500  8 TYR A  94         0.06    SIDE CHAIN                              
REMARK 500  9 TYR A  81         0.06    SIDE CHAIN                              
REMARK 500  9 TYR A  94         0.07    SIDE CHAIN                              
REMARK 500 10 TYR A  81         0.10    SIDE CHAIN                              
REMARK 500 10 TYR A  94         0.06    SIDE CHAIN                              
REMARK 500 10 ARG A  96         0.11    SIDE CHAIN                              
REMARK 500 11 TYR A  23         0.07    SIDE CHAIN                              
REMARK 500 11 TYR A  94         0.09    SIDE CHAIN                              
REMARK 500 12 TYR A  81         0.08    SIDE CHAIN                              
REMARK 500 12 TYR A  94         0.11    SIDE CHAIN                              
REMARK 500 13 TYR A  81         0.11    SIDE CHAIN                              
REMARK 500 13 TYR A  94         0.13    SIDE CHAIN                              
REMARK 500 14 TYR A  81         0.07    SIDE CHAIN                              
REMARK 500 15 TYR A  81         0.07    SIDE CHAIN                              
REMARK 500 15 TYR A  94         0.12    SIDE CHAIN                              
REMARK 500 16 TYR A  81         0.10    SIDE CHAIN                              
REMARK 500 16 TYR A  94         0.07    SIDE CHAIN                              
REMARK 500 17 TYR A  81         0.09    SIDE CHAIN                              
REMARK 500 18 TYR A  81         0.07    SIDE CHAIN                              
REMARK 500 18 TYR A  94         0.12    SIDE CHAIN                              
REMARK 500 20 TYR A  81         0.09    SIDE CHAIN                              
REMARK 500 20 TYR A  94         0.14    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 600                                                                      
REMARK 600 HETEROGEN                                                            
REMARK 600                                                                      
REMARK 600 HIS RESIDUES HAVE HYDROGENS ONLY ON THE EPSILON NITROGEN             
DBREF  2K3X A    1   113  UNP    Q12432   EAF3_YEAST       1    113             
SEQADV 2K3X LEU A  114  UNP  Q12432              EXPRESSION TAG                 
SEQADV 2K3X GLU A  115  UNP  Q12432              EXPRESSION TAG                 
SEQADV 2K3X HIS A  116  UNP  Q12432              EXPRESSION TAG                 
SEQADV 2K3X HIS A  117  UNP  Q12432              EXPRESSION TAG                 
SEQADV 2K3X HIS A  118  UNP  Q12432              EXPRESSION TAG                 
SEQADV 2K3X HIS A  119  UNP  Q12432              EXPRESSION TAG                 
SEQADV 2K3X HIS A  120  UNP  Q12432              EXPRESSION TAG                 
SEQADV 2K3X HIS A  121  UNP  Q12432              EXPRESSION TAG                 
SEQRES   1 A  121  MET VAL ASP LEU GLU GLN GLU PHE ALA LEU GLY GLY ARG          
SEQRES   2 A  121  CYS LEU ALA PHE HIS GLY PRO LEU MET TYR GLU ALA LYS          
SEQRES   3 A  121  ILE LEU LYS ILE TRP ASP PRO SER SER LYS MET TYR THR          
SEQRES   4 A  121  SER ILE PRO ASN ASP LYS PRO GLY GLY SER SER GLN ALA          
SEQRES   5 A  121  THR LYS GLU ILE LYS PRO GLN LYS LEU GLY GLU ASP GLU          
SEQRES   6 A  121  SER ILE PRO GLU GLU ILE ILE ASN GLY LYS CYS PHE PHE          
SEQRES   7 A  121  ILE HIS TYR GLN GLY TRP LYS SER SER TRP ASP GLU TRP          
SEQRES   8 A  121  VAL GLY TYR ASP ARG ILE ARG ALA TYR ASN GLU GLU ASN          
SEQRES   9 A  121  ILE ALA MET LYS LYS ARG LEU ALA ASN LEU GLU HIS HIS          
SEQRES  10 A  121  HIS HIS HIS HIS                                              
HELIX    1   1 PRO A   68  ASN A   73  1                                   6    
HELIX    2   2 LYS A   85  ASP A   89  5                                   5    
HELIX    3   3 ASN A  101  ASN A  113  1                                  13    
SHEET    1   A 4 TYR A  38  THR A  39  0                                        
SHEET    2   A 4 MET A  22  TRP A  31 -1  N  ILE A  30   O  THR A  39           
SHEET    3   A 4 CYS A  76  ILE A  79 -1  O  PHE A  78   N  LYS A  29           
SHEET    4   A 4 GLU A  90  GLY A  93 -1  O  GLU A  90   N  ILE A  79           
SHEET    1   B 4 TYR A  38  THR A  39  0                                        
SHEET    2   B 4 MET A  22  TRP A  31 -1  N  ILE A  30   O  THR A  39           
SHEET    3   B 4 ARG A  13  PHE A  17 -1  N  CYS A  14   O  ALA A  25           
SHEET    4   B 4 ILE A  97  ALA A  99 -1  O  ARG A  98   N  LEU A  15           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1