HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAY-08 2K49 TITLE SOLUTION NMR STRUCTURE OF UPF0339 PROTEIN SO3888 FROM SHEWANELLA TITLE 2 ONEIDENSIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SOR190 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0339 PROTEIN SO_3888; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_3888; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SOR190-21.2 KEYWDS SOLUTION NMR STRUCTURE, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.TANG,D.WANG,C.NWOSU,M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA, AUTHOR 2 T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 6 08-MAY-24 2K49 1 REMARK REVDAT 5 14-JUN-23 2K49 1 REMARK REVDAT 4 19-FEB-20 2K49 1 REMARK SEQADV REVDAT 3 13-JUL-11 2K49 1 VERSN REVDAT 2 24-FEB-09 2K49 1 VERSN REVDAT 1 08-JUL-08 2K49 0 JRNL AUTH Y.TANG,D.WANG,C.NWOSU,M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN, JRNL AUTH 2 G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF UPF0339 PROTEIN SO3888 FROM JRNL TITL 2 SHEWANELLA ONEIDENSIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 2291 COMFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 146 DIHEDRAL ANGLE CONSTRAINTS, AND 92 HYDROGEN REMARK 3 BOND CONSTRAINTS (22.4 CONSTRAINTS PER RESIDUE, 7.7 LONG RANGE REMARK 3 CONSTRAINTS PER RESIDUE, COMPUTED FOR RESIDUES 1 TO 118 BY PSVS REMARK 3 1.3) STRUCTURE DETERMINATION WAS PERFORMED ITERATIVELY USING REMARK 3 AUTOSTRUCTURE AND CYANA. THE 20 LOWEST ENERGY STRUCTURES OUT OF REMARK 3 100 WERE FURTHER REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY REMARK 3 MINIMIZATION IN EXPLICIT WATER (CNS). THE C-TERMINAL HIS TAG REMARK 3 RESIDUES OF THE PROTEIN (HHHHHH) WERE INCLUDED IN ALL STRUCTURE REMARK 3 CALCULATIONS AND HAVE BEEN INCLUDED IN THIS DEPOSITION. REMARK 3 COORDINATES FOR THE FOLLOWING RESIDUES ARE NOT WELL DETERMINED REMARK 3 (S(PHI)+S(PSI)<1.8): 1-3, 21-22, 112-118. THE STRUCTURE WAS REMARK 3 DETERMINED USING TRIPLE RESONANCE NMR SPECTROSCOPY. AUTOMATED REMARK 3 BACKBONE ASSIGNMENTS WERE MADE USING AUTOASSIGN AND THE SIDE REMARK 3 CHAIN ASSIGNMENTS WERE COMPLETED MANUALLY. AUTOMATIC NOESY REMARK 3 ASSIGNMENTS AS WELL AS DISTANCE, DIHEDRAL ANGLE (TALOS) AND REMARK 3 HYDROGEN BOND CONSTRAINTS WERE DETERMINED USING CYANA. REMARK 3 COMPLETENESS OF NMR ASSIGNMENT: BACKBONE, 94.10%, SIDE CHAIN, REMARK 3 82.27%, AROMATICS, 76.92%, STEREOSPECIFIC METHYL, 91.67%, FINAL REMARK 3 STRUCTURE QUALITY FACTORS (FOR RESIDUE 1-118 PSVS 1.3), WHERE REMARK 3 ORDERED RESIDUE RANGES (S(PHI)+S(PSI)>1.8) COMPRISE: 4-20, 23- REMARK 3 111. (A) RMSD (ORDERED RESIDUES): BB 0.6, HEAVY ATOM: 1.1 (B) REMARK 3 RAMACHANDRAN STATISTICS FOR ORDERED RESIDUES: MOST FAVORED, 88.1% REMARK 3 , ADDITIONALLY ALLOWED: 11.8%, GENEROUSLY ALLOWED : 0.1%, REMARK 3 DISALLOWED, 0.0%. (C) PROCHECK SCORES FOR ORDERED RESIDUES (RAW/ REMARK 3 Z): PHI-PSI, -0.30/-0.87, ALL , -0.12/-0.71. (D) MOLPROBITY REMARK 3 CLASH SCORE (RAW/Z): 13.32/-0.76. (E) RPF SCORES FOR GOODNESS OF REMARK 3 FIT TO NOESY DATA (RESIDUE 1-118): RECALL, 1, PRECISION, 0.975, REMARK 3 F-MEASURE, 0.987, DP-SCORE, 0.89. REMARK 4 REMARK 4 2K49 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100656. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0.1 M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3 MM [U-100% 13C; U-100% 15N] REMARK 210 SOR190, 5 MM CACL2, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM AMMONIUM REMARK 210 ACETATE, 10 MM DTT, 0.02 % NAN3, REMARK 210 95% H2O/5% D2O; 1.3 MM [U-5% 13C; REMARK 210 U-100% 15N] SOR190, 5 MM CACL2, REMARK 210 100 MM SODIUM CHLORIDE, 20 MM REMARK 210 AMMONIUM ACETATE, 10 MM DTT, REMARK 210 0.02 % NAN3, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D SIMUTANEOUS REMARK 210 NOESY; 3D 1H-13C NOESY AROMATIC; REMARK 210 3D HNCO; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HCCH-COSY; 3D HCCH-TOCSY; REMARK 210 3D HBHA(CO)NH; 2D 1H-13C HSQC_ REMARK 210 HIGH RESOLUTION; 3D CCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.2.1, SPARKY 3.110, REMARK 210 AUTOSTRUCTURE 2.2.1, NMRPIPE 2.3, REMARK 210 CYANA 2.1, PSVS 1.3, PDBSTAT 5.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE PROTEIN IS A MONOMER BY GEL FILTRATION CHROMATOGRAPHY REMARK 210 AND STATIC LIGHT SCATTERING. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 13 -2.90 70.60 REMARK 500 1 ALA A 54 -9.39 -56.41 REMARK 500 1 HIS A 114 67.14 -115.09 REMARK 500 2 SER A 2 -48.04 -135.21 REMARK 500 2 GLU A 25 107.31 -57.40 REMARK 500 2 ALA A 57 101.34 -167.35 REMARK 500 2 HIS A 117 99.23 -69.62 REMARK 500 3 GLU A 31 -168.71 -79.26 REMARK 500 3 MET A 83 99.20 -66.74 REMARK 500 3 HIS A 115 -68.73 -102.98 REMARK 500 4 ASP A 64 70.33 63.49 REMARK 500 4 HIS A 75 64.37 65.65 REMARK 500 4 HIS A 114 141.88 62.34 REMARK 500 5 LYS A 102 43.60 -76.77 REMARK 500 5 HIS A 113 71.14 -68.32 REMARK 500 5 HIS A 114 100.11 -50.09 REMARK 500 6 LYS A 102 42.76 -77.96 REMARK 500 7 ALA A 21 36.27 -79.27 REMARK 500 7 ALA A 57 101.40 -164.24 REMARK 500 7 LYS A 102 35.70 -98.52 REMARK 500 7 HIS A 116 -71.07 67.76 REMARK 500 8 HIS A 75 34.68 72.71 REMARK 500 8 ILE A 77 96.00 -69.07 REMARK 500 8 HIS A 113 31.02 -83.45 REMARK 500 8 HIS A 114 37.78 -86.33 REMARK 500 8 HIS A 116 39.86 -89.54 REMARK 500 9 GLU A 31 -167.92 -103.47 REMARK 500 9 GLU A 112 -163.40 -111.36 REMARK 500 9 HIS A 113 11.88 -146.85 REMARK 500 10 ASP A 13 -21.64 74.45 REMARK 500 10 ALA A 57 99.99 -166.55 REMARK 500 11 LEU A 111 -73.09 -56.71 REMARK 500 11 HIS A 113 87.18 -67.20 REMARK 500 12 ASN A 12 26.06 -79.70 REMARK 500 12 ASP A 13 -1.01 67.35 REMARK 500 12 ASP A 64 65.71 64.07 REMARK 500 13 ALA A 57 101.09 -160.57 REMARK 500 13 ASN A 63 0.91 -69.37 REMARK 500 13 THR A 105 93.52 -69.97 REMARK 500 14 ALA A 21 26.06 -78.05 REMARK 500 14 HIS A 114 102.10 60.94 REMARK 500 14 HIS A 115 103.03 -164.02 REMARK 500 14 HIS A 116 102.54 -59.46 REMARK 500 15 SER A 2 -172.84 -172.47 REMARK 500 15 SER A 30 -167.58 -108.27 REMARK 500 15 ALA A 54 -15.34 -49.92 REMARK 500 15 LYS A 102 40.85 -78.78 REMARK 500 15 HIS A 113 90.54 -170.34 REMARK 500 16 GLU A 31 -162.26 -119.34 REMARK 500 16 ALA A 54 10.60 -66.81 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SOR190 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15791 RELATED DB: BMRB DBREF 2K49 A 1 110 UNP Q8EAL4 Y3888_SHEON 1 110 SEQADV 2K49 LEU A 111 UNP Q8EAL4 EXPRESSION TAG SEQADV 2K49 GLU A 112 UNP Q8EAL4 EXPRESSION TAG SEQADV 2K49 HIS A 113 UNP Q8EAL4 EXPRESSION TAG SEQADV 2K49 HIS A 114 UNP Q8EAL4 EXPRESSION TAG SEQADV 2K49 HIS A 115 UNP Q8EAL4 EXPRESSION TAG SEQADV 2K49 HIS A 116 UNP Q8EAL4 EXPRESSION TAG SEQADV 2K49 HIS A 117 UNP Q8EAL4 EXPRESSION TAG SEQADV 2K49 HIS A 118 UNP Q8EAL4 EXPRESSION TAG SEQRES 1 A 118 MET SER GLY TRP TYR GLU LEU SER LYS SER SER ASN ASP SEQRES 2 A 118 GLN PHE LYS PHE VAL LEU LYS ALA GLY ASN GLY GLU VAL SEQRES 3 A 118 ILE LEU THR SER GLU LEU TYR THR GLY LYS SER GLY ALA SEQRES 4 A 118 MET ASN GLY ILE GLU SER VAL GLN THR ASN SER PRO ILE SEQRES 5 A 118 GLU ALA ARG TYR ALA LYS GLU VAL ALA LYS ASN ASP LYS SEQRES 6 A 118 PRO TYR PHE ASN LEU LYS ALA ALA ASN HIS GLN ILE ILE SEQRES 7 A 118 GLY THR SER GLN MET TYR SER SER THR ALA ALA ARG ASP SEQRES 8 A 118 ASN GLY ILE LYS SER VAL MET GLU ASN GLY LYS THR THR SEQRES 9 A 118 THR ILE LYS ASP LEU THR LEU GLU HIS HIS HIS HIS HIS SEQRES 10 A 118 HIS HELIX 1 1 GLY A 35 SER A 50 1 16 HELIX 2 2 ILE A 52 ALA A 54 5 3 HELIX 3 3 SER A 86 GLY A 101 1 16 SHEET 1 A 4 VAL A 26 THR A 29 0 SHEET 2 A 4 PHE A 15 LYS A 20 -1 N LEU A 19 O ILE A 27 SHEET 3 A 4 TRP A 4 LYS A 9 -1 N SER A 8 O LYS A 16 SHEET 4 A 4 ILE A 106 ASP A 108 1 O LYS A 107 N LEU A 7 SHEET 1 B 3 TYR A 56 ALA A 61 0 SHEET 2 B 3 LYS A 65 LYS A 71 -1 O ASN A 69 N ALA A 57 SHEET 3 B 3 ILE A 77 THR A 80 -1 O GLY A 79 N LEU A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1