HEADER RIBOSOMAL PROTEIN 20-JUN-08 2K4X TITLE SOLUTION STRUCTURE OF 30S RIBOSOMAL PROTEIN S27A FROM THERMOPLASMA TITLE 2 ACIDOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S27AE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 GENE: RPS27AE, TA1093; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS 30S RIBOSOMAL PROTEIN S27A, METAL-BINDING, RIBONUCLEOPROTEIN, KEYWDS 2 RIBOSOMAL PROTEIN, ZINC-FINGER, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 4 NESG, ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS, OCSP EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.WU,A.YEE,C.FARES,A.LEMAK,A.SEMEST,C.ARROWSMITH,G.T.MONTELIONE, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG),ONTARIO CENTRE FOR AUTHOR 3 STRUCTURAL PROTEOMICS (OCSP) REVDAT 6 08-MAY-24 2K4X 1 REMARK REVDAT 5 14-JUN-23 2K4X 1 REMARK REVDAT 4 19-FEB-20 2K4X 1 REMARK REVDAT 3 23-MAY-12 2K4X 1 REMARK VERSN REVDAT 2 24-FEB-09 2K4X 1 VERSN REVDAT 1 19-AUG-08 2K4X 0 JRNL AUTH B.WU,A.YEE,C.FARES,A.LEMAK,A.SEMEST,C.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF 30S RIBOSOMAL PROTEIN S27A FROM JRNL TITL 2 THERMOPLASMA ACIDOPHILUM/NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET TAT88/ONTARIO CENTER FOR STRUCTURAL JRNL TITL 4 PROTEOMICS TARGET TA1093 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES,M.SUNNERHAGEN, REMARK 1 AUTH 2 C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND PROTEIN REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, CNS 1.0 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K4X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100680. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 30S RIBOSOMAL PROTEIN S27A, 10 REMARK 210 MM [U-100% 2H] TRIS, 300 MM REMARK 210 SODIUM CHLORIDE, 10 UM ZNSO4, 10 REMARK 210 MM [U-100% 2H] DTT, 0.01 % REMARK 210 SODIUM AZIDE, 10 MM BENZAMIDINE, REMARK 210 90% H2O/10% D2O; 0.5 MM [U-100% REMARK 210 13C; U-100% 15N] 30S RIBOSOMAL REMARK 210 PROTEIN S27A, 10 MM [U-100% 2H] REMARK 210 TRIS, 300 MM SODIUM CHLORIDE, 10 REMARK 210 UM ZNSO4, 10 MM [U-100% 2H] DTT, REMARK 210 0.01 % SODIUM AZIDE, 10 MM REMARK 210 BENZAMIDINE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D CCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.95, AUTOASSIGN, CYANA REMARK 210 2.1, AUTOSTRUCTURE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 2 105.15 67.22 REMARK 500 1 LYS A 13 88.31 -63.77 REMARK 500 1 PRO A 26 90.79 -65.77 REMARK 500 1 ALA A 31 92.33 -52.26 REMARK 500 1 ARG A 36 -169.69 -171.00 REMARK 500 1 ARG A 41 -51.28 -176.94 REMARK 500 1 LYS A 48 90.39 -67.14 REMARK 500 2 LYS A 13 38.59 -82.71 REMARK 500 2 PRO A 26 81.63 -63.09 REMARK 500 2 ARG A 41 -54.43 -171.45 REMARK 500 2 LYS A 48 95.59 -52.99 REMARK 500 3 TYR A 7 -172.00 62.06 REMARK 500 3 LYS A 17 103.87 -51.31 REMARK 500 3 PRO A 26 81.83 -64.61 REMARK 500 3 ARG A 41 -51.83 84.27 REMARK 500 3 LYS A 52 107.64 68.04 REMARK 500 4 GLN A 2 109.83 69.81 REMARK 500 4 ARG A 16 -68.25 -156.48 REMARK 500 4 LYS A 17 78.51 -69.86 REMARK 500 4 HIS A 18 114.15 164.20 REMARK 500 4 PRO A 26 81.81 -61.68 REMARK 500 4 ALA A 31 101.82 -59.38 REMARK 500 4 ARG A 41 -37.19 -173.34 REMARK 500 4 CYS A 42 11.70 -146.48 REMARK 500 4 LYS A 48 102.91 -54.33 REMARK 500 4 LYS A 49 90.66 -69.19 REMARK 500 4 LYS A 52 86.57 55.39 REMARK 500 5 GLN A 2 86.14 -169.85 REMARK 500 5 LEU A 6 -166.82 55.65 REMARK 500 5 ILE A 9 100.69 66.51 REMARK 500 5 ALA A 10 21.28 -148.27 REMARK 500 5 ARG A 16 -17.00 74.82 REMARK 500 5 LYS A 17 94.97 -68.19 REMARK 500 5 HIS A 18 99.22 -160.99 REMARK 500 5 PRO A 26 85.14 -64.23 REMARK 500 5 ALA A 31 95.83 -63.84 REMARK 500 5 ARG A 36 172.96 179.38 REMARK 500 5 ARG A 41 -46.76 74.28 REMARK 500 5 LYS A 48 88.12 -65.59 REMARK 500 6 ARG A 4 83.82 -62.76 REMARK 500 6 LYS A 13 108.31 67.52 REMARK 500 6 HIS A 18 168.47 59.71 REMARK 500 6 PRO A 26 93.14 -56.57 REMARK 500 6 PHE A 29 -165.79 -71.03 REMARK 500 6 ARG A 41 -30.10 -173.34 REMARK 500 6 CYS A 42 3.82 -150.12 REMARK 500 6 ALA A 50 75.29 -69.50 REMARK 500 6 SER A 53 -71.75 -78.93 REMARK 500 7 GLU A 5 -42.31 -140.37 REMARK 500 7 LEU A 6 96.40 57.20 REMARK 500 REMARK 500 THIS ENTRY HAS 178 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 56 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 CYS A 24 SG 108.9 REMARK 620 3 CYS A 39 SG 106.8 110.3 REMARK 620 4 CYS A 42 SG 111.5 111.1 108.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 56 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TAT88 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15811 RELATED DB: BMRB DBREF 2K4X A 1 55 UNP Q9HJ78 RS27A_THEAC 1 55 SEQRES 1 A 55 MET GLN LYS ARG GLU LEU TYR GLU ILE ALA ASP GLY LYS SEQRES 2 A 55 LEU VAL ARG LYS HIS ARG PHE CYS PRO ARG CYS GLY PRO SEQRES 3 A 55 GLY VAL PHE LEU ALA GLU HIS ALA ASP ARG TYR SER CYS SEQRES 4 A 55 GLY ARG CYS GLY TYR THR GLU PHE LYS LYS ALA LYS LYS SEQRES 5 A 55 SER LYS SER HET ZN A 56 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ SHEET 1 A 3 ALA A 31 GLU A 32 0 SHEET 2 A 3 ARG A 36 SER A 38 -1 O SER A 38 N ALA A 31 SHEET 3 A 3 GLU A 46 PHE A 47 -1 O GLU A 46 N TYR A 37 LINK SG CYS A 21 ZN ZN A 56 1555 1555 2.35 LINK SG CYS A 24 ZN ZN A 56 1555 1555 2.36 LINK SG CYS A 39 ZN ZN A 56 1555 1555 2.34 LINK SG CYS A 42 ZN ZN A 56 1555 1555 2.36 SITE 1 AC1 3 CYS A 21 CYS A 39 ARG A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1