data_2K4Z # _entry.id 2K4Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2K4Z pdb_00002k4z 10.2210/pdb2k4z/pdb RCSB RCSB100682 ? ? BMRB 15816 ? ? WWPDB D_1000100682 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details OP5 TargetDB unspecified . 15816 BMRB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2K4Z _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-22 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cort, J.R.' 1 'Dahl, C.' 2 'Grimm, F.' 3 'Montelione, G.T.' 4 'Kennedy, M.A.' 5 'Northeast Structural Genomics Consortium (NESG)' 6 # _citation.id primary _citation.title 'Solution NMR Structure of the IscA-like Protein DsrR Involved in Sulfur Oxidation in Allochromatium vinosum' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dahl, C.' 1 ? primary 'Cort, J.R.' 2 ? primary 'Grimm, F.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description DsrR _entity.formula_weight 13748.387 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFDDLTEDDIRLTSEGV EIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRDPTYRPPSGG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFDDLTEDDIRLTSEGV EIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRDPTYRPPSGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier OP5 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 MET n 1 23 PHE n 1 24 LYS n 1 25 LEU n 1 26 THR n 1 27 PRO n 1 28 ALA n 1 29 ALA n 1 30 ALA n 1 31 GLU n 1 32 GLN n 1 33 VAL n 1 34 LEU n 1 35 LYS n 1 36 ALA n 1 37 ALA n 1 38 LYS n 1 39 GLN n 1 40 GLY n 1 41 GLY n 1 42 THR n 1 43 GLU n 1 44 GLY n 1 45 MET n 1 46 CYS n 1 47 LEU n 1 48 ARG n 1 49 LEU n 1 50 ALA n 1 51 ALA n 1 52 GLY n 1 53 ARG n 1 54 ASN n 1 55 PRO n 1 56 ASP n 1 57 GLY n 1 58 SER n 1 59 ILE n 1 60 ASP n 1 61 TYR n 1 62 ARG n 1 63 MET n 1 64 GLY n 1 65 PHE n 1 66 ASP n 1 67 ASP n 1 68 LEU n 1 69 THR n 1 70 GLU n 1 71 ASP n 1 72 ASP n 1 73 ILE n 1 74 ARG n 1 75 LEU n 1 76 THR n 1 77 SER n 1 78 GLU n 1 79 GLY n 1 80 VAL n 1 81 GLU n 1 82 ILE n 1 83 VAL n 1 84 ILE n 1 85 ALA n 1 86 PRO n 1 87 ASP n 1 88 TYR n 1 89 VAL n 1 90 SER n 1 91 LEU n 1 92 LEU n 1 93 ASP n 1 94 GLN n 1 95 THR n 1 96 THR n 1 97 LEU n 1 98 ASP n 1 99 TYR n 1 100 VAL n 1 101 GLU n 1 102 LEU n 1 103 GLU n 1 104 PRO n 1 105 GLY n 1 106 GLN n 1 107 PHE n 1 108 HIS n 1 109 PHE n 1 110 ILE n 1 111 PHE n 1 112 LEU n 1 113 ASN n 1 114 PRO n 1 115 ARG n 1 116 ASP n 1 117 PRO n 1 118 THR n 1 119 TYR n 1 120 ARG n 1 121 PRO n 1 122 PRO n 1 123 SER n 1 124 GLY n 1 125 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Allochromatium vinosum' _entity_src_gen.gene_src_genus Allochromatium _entity_src_gen.pdbx_gene_src_gene dsrR _entity_src_gen.gene_src_species vinosum _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Allochromatium vinosum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species coli _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9F299_CHRVI _struct_ref.pdbx_db_accession Q9F299 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFDDLTEDDIRLTSEGVEIVIAPDYVSLLDQTTLDYVE LEPGQFHFIFLNPRDPTYRPPSGG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2K4Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9F299 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 104 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 104 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2K4Z MET A 1 ? UNP Q9F299 ? ? 'expression tag' -20 1 1 2K4Z GLY A 2 ? UNP Q9F299 ? ? 'expression tag' -19 2 1 2K4Z SER A 3 ? UNP Q9F299 ? ? 'expression tag' -18 3 1 2K4Z SER A 4 ? UNP Q9F299 ? ? 'expression tag' -17 4 1 2K4Z HIS A 5 ? UNP Q9F299 ? ? 'expression tag' -16 5 1 2K4Z HIS A 6 ? UNP Q9F299 ? ? 'expression tag' -15 6 1 2K4Z HIS A 7 ? UNP Q9F299 ? ? 'expression tag' -14 7 1 2K4Z HIS A 8 ? UNP Q9F299 ? ? 'expression tag' -13 8 1 2K4Z HIS A 9 ? UNP Q9F299 ? ? 'expression tag' -12 9 1 2K4Z HIS A 10 ? UNP Q9F299 ? ? 'expression tag' -11 10 1 2K4Z SER A 11 ? UNP Q9F299 ? ? 'expression tag' -10 11 1 2K4Z SER A 12 ? UNP Q9F299 ? ? 'expression tag' -9 12 1 2K4Z GLY A 13 ? UNP Q9F299 ? ? 'expression tag' -8 13 1 2K4Z LEU A 14 ? UNP Q9F299 ? ? 'expression tag' -7 14 1 2K4Z VAL A 15 ? UNP Q9F299 ? ? 'expression tag' -6 15 1 2K4Z PRO A 16 ? UNP Q9F299 ? ? 'expression tag' -5 16 1 2K4Z ARG A 17 ? UNP Q9F299 ? ? 'expression tag' -4 17 1 2K4Z GLY A 18 ? UNP Q9F299 ? ? 'expression tag' -3 18 1 2K4Z SER A 19 ? UNP Q9F299 ? ? 'expression tag' -2 19 1 2K4Z HIS A 20 ? UNP Q9F299 ? ? 'expression tag' -1 20 1 2K4Z MET A 21 ? UNP Q9F299 ? ? 'expression tag' 0 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 3 '2D 1H-13C HSQC' 1 2 3 '2D 1H-13C HSQC' 1 3 3 '3D CBCA(CO)NH' 1 4 3 '3D HNCACB' 1 5 3 '3D HCCH-TOCSY' 1 6 3 '3D HNCO' 1 7 3 '3D C(CO)NH' 1 8 3 '3D HBHA(CO)NH' 1 9 3 '3D HCCH-COSY' 1 10 3 '3D 1H-15N NOESY' 1 11 3 '3D 1H-13C NOESY' 1 12 2 '4D 1H-13C-13C-1H HMQC NOESY' 1 13 1 '2D 1H-13C HSQC' 1 14 2 '2D 1H-15N HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 625 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1 mM [U-10% 13C; U-100% 15N] DsrR, 93 % H2O, 7 % D2O, 50 mM Tris HCl, 500 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 93% H2O/7% D2O ; 1 '93% H2O/7% D2O' '1 mM [U-100% 13C; U-100% 15N] DsrR, 100 % D2O, 50 mM Tris HCl, 500 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 100% D2O' 2 '100% D2O' ;1 mM [U-100% 13C; U-100% 15N] DsrR, 93 % H2O, 7 % D2O, 50 mM Tris HCl, 500 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 93% H2O/7% D2O ; 3 '93% H2O/7% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 750 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2K4Z _pdbx_nmr_refine.method 'molecular dynamics, simulated annealing' _pdbx_nmr_refine.details 'final refinement done in explicit solvent' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'fewest restraint violations, lowest energy, best geometry' _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2K4Z _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2K4Z _pdbx_nmr_representative.selection_criteria 'close to the average, good geometry' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Accelrys Software Inc.' processing Felix ? 1 'Accelrys Software Inc.' 'data analysis' Felix ? 2 'Huang, Tejero, Powers and Montelione' 'structure solution' AutoStructure ? 3 Goddard 'chemical shift assignment' Sparky ? 4 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' ? 5 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 6 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS ? 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2K4Z _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2K4Z _struct.title 'Solution NMR Structure of Allochromatium vinosum DsrR: Northeast Structural Genomics Consortium Target OP5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2K4Z _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.text ;IscA/SufA/HesB like fold, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, METAL BINDING PROTEIN, unknown function ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 26 ? GLY A 40 ? THR A 5 GLY A 19 1 ? 15 HELX_P HELX_P2 2 TYR A 88 ? ASP A 93 ? TYR A 67 ASP A 72 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 23 ? LEU A 25 ? PHE A 2 LEU A 4 A 2 THR A 95 ? GLU A 103 ? THR A 74 GLU A 82 A 3 GLN A 106 ? LEU A 112 ? GLN A 85 LEU A 91 B 1 ILE A 59 ? ASP A 66 ? ILE A 38 ASP A 45 B 2 CYS A 46 ? ARG A 53 ? CYS A 25 ARG A 32 B 3 GLU A 81 ? VAL A 83 ? GLU A 60 VAL A 62 B 4 ARG A 74 ? THR A 76 ? ARG A 53 THR A 55 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 24 ? N LYS A 3 O LEU A 97 ? O LEU A 76 A 2 3 N THR A 96 ? N THR A 75 O LEU A 112 ? O LEU A 91 B 1 2 O ASP A 66 ? O ASP A 45 N CYS A 46 ? N CYS A 25 B 2 3 N LEU A 47 ? N LEU A 26 O VAL A 83 ? O VAL A 62 B 3 4 O ILE A 82 ? O ILE A 61 N LEU A 75 ? N LEU A 54 # _atom_sites.entry_id 2K4Z _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -20 -20 MET MET A . n A 1 2 GLY 2 -19 -19 GLY GLY A . n A 1 3 SER 3 -18 -18 SER SER A . n A 1 4 SER 4 -17 -17 SER SER A . n A 1 5 HIS 5 -16 -16 HIS HIS A . n A 1 6 HIS 6 -15 -15 HIS HIS A . n A 1 7 HIS 7 -14 -14 HIS HIS A . n A 1 8 HIS 8 -13 -13 HIS HIS A . n A 1 9 HIS 9 -12 -12 HIS HIS A . n A 1 10 HIS 10 -11 -11 HIS HIS A . n A 1 11 SER 11 -10 -10 SER SER A . n A 1 12 SER 12 -9 -9 SER SER A . n A 1 13 GLY 13 -8 -8 GLY GLY A . n A 1 14 LEU 14 -7 -7 LEU LEU A . n A 1 15 VAL 15 -6 -6 VAL VAL A . n A 1 16 PRO 16 -5 -5 PRO PRO A . n A 1 17 ARG 17 -4 -4 ARG ARG A . n A 1 18 GLY 18 -3 -3 GLY GLY A . n A 1 19 SER 19 -2 -2 SER SER A . n A 1 20 HIS 20 -1 -1 HIS HIS A . n A 1 21 MET 21 0 0 MET MET A . n A 1 22 MET 22 1 1 MET MET A . n A 1 23 PHE 23 2 2 PHE PHE A . n A 1 24 LYS 24 3 3 LYS LYS A . n A 1 25 LEU 25 4 4 LEU LEU A . n A 1 26 THR 26 5 5 THR THR A . n A 1 27 PRO 27 6 6 PRO PRO A . n A 1 28 ALA 28 7 7 ALA ALA A . n A 1 29 ALA 29 8 8 ALA ALA A . n A 1 30 ALA 30 9 9 ALA ALA A . n A 1 31 GLU 31 10 10 GLU GLU A . n A 1 32 GLN 32 11 11 GLN GLN A . n A 1 33 VAL 33 12 12 VAL VAL A . n A 1 34 LEU 34 13 13 LEU LEU A . n A 1 35 LYS 35 14 14 LYS LYS A . n A 1 36 ALA 36 15 15 ALA ALA A . n A 1 37 ALA 37 16 16 ALA ALA A . n A 1 38 LYS 38 17 17 LYS LYS A . n A 1 39 GLN 39 18 18 GLN GLN A . n A 1 40 GLY 40 19 19 GLY GLY A . n A 1 41 GLY 41 20 20 GLY GLY A . n A 1 42 THR 42 21 21 THR THR A . n A 1 43 GLU 43 22 22 GLU GLU A . n A 1 44 GLY 44 23 23 GLY GLY A . n A 1 45 MET 45 24 24 MET MET A . n A 1 46 CYS 46 25 25 CYS CYS A . n A 1 47 LEU 47 26 26 LEU LEU A . n A 1 48 ARG 48 27 27 ARG ARG A . n A 1 49 LEU 49 28 28 LEU LEU A . n A 1 50 ALA 50 29 29 ALA ALA A . n A 1 51 ALA 51 30 30 ALA ALA A . n A 1 52 GLY 52 31 31 GLY GLY A . n A 1 53 ARG 53 32 32 ARG ARG A . n A 1 54 ASN 54 33 33 ASN ASN A . n A 1 55 PRO 55 34 34 PRO PRO A . n A 1 56 ASP 56 35 35 ASP ASP A . n A 1 57 GLY 57 36 36 GLY GLY A . n A 1 58 SER 58 37 37 SER SER A . n A 1 59 ILE 59 38 38 ILE ILE A . n A 1 60 ASP 60 39 39 ASP ASP A . n A 1 61 TYR 61 40 40 TYR TYR A . n A 1 62 ARG 62 41 41 ARG ARG A . n A 1 63 MET 63 42 42 MET MET A . n A 1 64 GLY 64 43 43 GLY GLY A . n A 1 65 PHE 65 44 44 PHE PHE A . n A 1 66 ASP 66 45 45 ASP ASP A . n A 1 67 ASP 67 46 46 ASP ASP A . n A 1 68 LEU 68 47 47 LEU LEU A . n A 1 69 THR 69 48 48 THR THR A . n A 1 70 GLU 70 49 49 GLU GLU A . n A 1 71 ASP 71 50 50 ASP ASP A . n A 1 72 ASP 72 51 51 ASP ASP A . n A 1 73 ILE 73 52 52 ILE ILE A . n A 1 74 ARG 74 53 53 ARG ARG A . n A 1 75 LEU 75 54 54 LEU LEU A . n A 1 76 THR 76 55 55 THR THR A . n A 1 77 SER 77 56 56 SER SER A . n A 1 78 GLU 78 57 57 GLU GLU A . n A 1 79 GLY 79 58 58 GLY GLY A . n A 1 80 VAL 80 59 59 VAL VAL A . n A 1 81 GLU 81 60 60 GLU GLU A . n A 1 82 ILE 82 61 61 ILE ILE A . n A 1 83 VAL 83 62 62 VAL VAL A . n A 1 84 ILE 84 63 63 ILE ILE A . n A 1 85 ALA 85 64 64 ALA ALA A . n A 1 86 PRO 86 65 65 PRO PRO A . n A 1 87 ASP 87 66 66 ASP ASP A . n A 1 88 TYR 88 67 67 TYR TYR A . n A 1 89 VAL 89 68 68 VAL VAL A . n A 1 90 SER 90 69 69 SER SER A . n A 1 91 LEU 91 70 70 LEU LEU A . n A 1 92 LEU 92 71 71 LEU LEU A . n A 1 93 ASP 93 72 72 ASP ASP A . n A 1 94 GLN 94 73 73 GLN GLN A . n A 1 95 THR 95 74 74 THR THR A . n A 1 96 THR 96 75 75 THR THR A . n A 1 97 LEU 97 76 76 LEU LEU A . n A 1 98 ASP 98 77 77 ASP ASP A . n A 1 99 TYR 99 78 78 TYR TYR A . n A 1 100 VAL 100 79 79 VAL VAL A . n A 1 101 GLU 101 80 80 GLU GLU A . n A 1 102 LEU 102 81 81 LEU LEU A . n A 1 103 GLU 103 82 82 GLU GLU A . n A 1 104 PRO 104 83 83 PRO PRO A . n A 1 105 GLY 105 84 84 GLY GLY A . n A 1 106 GLN 106 85 85 GLN GLN A . n A 1 107 PHE 107 86 86 PHE PHE A . n A 1 108 HIS 108 87 87 HIS HIS A . n A 1 109 PHE 109 88 88 PHE PHE A . n A 1 110 ILE 110 89 89 ILE ILE A . n A 1 111 PHE 111 90 90 PHE PHE A . n A 1 112 LEU 112 91 91 LEU LEU A . n A 1 113 ASN 113 92 92 ASN ASN A . n A 1 114 PRO 114 93 93 PRO PRO A . n A 1 115 ARG 115 94 94 ARG ARG A . n A 1 116 ASP 116 95 95 ASP ASP A . n A 1 117 PRO 117 96 96 PRO PRO A . n A 1 118 THR 118 97 97 THR THR A . n A 1 119 TYR 119 98 98 TYR TYR A . n A 1 120 ARG 120 99 99 ARG ARG A . n A 1 121 PRO 121 100 100 PRO PRO A . n A 1 122 PRO 122 101 101 PRO PRO A . n A 1 123 SER 123 102 102 SER SER A . n A 1 124 GLY 124 103 103 GLY GLY A . n A 1 125 GLY 125 104 104 GLY GLY A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-19 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' Other 5 4 'Structure model' 'Database references' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_status 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id DsrR 1 mM '[U-10% 13C; U-100% 15N]' 1 H2O 93 % ? 1 D2O 7 % ? 1 'Tris HCl' 50 mM ? 1 'sodium chloride' 500 mM ? 1 DTT 5 mM ? 1 'sodium azide' 0.02 % ? 1 DsrR 1 mM '[U-100% 13C; U-100% 15N]' 2 D2O 100 % ? 2 'Tris HCl' 50 mM ? 2 'sodium chloride' 500 mM ? 2 DTT 5 mM ? 2 'sodium azide' 0.02 % ? 2 DsrR 1 mM '[U-100% 13C; U-100% 15N]' 3 H2O 93 % ? 3 D2O 7 % ? 3 'Tris HCl' 50 mM ? 3 'sodium chloride' 500 mM ? 3 DTT 5 mM ? 3 'sodium azide' 0.02 % ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 OD1 A ASP 95 ? ? HG1 A THR 97 ? ? 1.59 2 5 HG1 A THR 48 ? ? OD2 A ASP 51 ? ? 1.59 3 7 OD2 A ASP 39 ? ? HH12 A ARG 41 ? ? 1.58 4 9 HG1 A THR 48 ? ? OD1 A ASP 51 ? ? 1.53 5 10 HG1 A THR 48 ? ? OD1 A ASP 51 ? ? 1.58 6 13 OD1 A ASP 95 ? ? HG1 A THR 97 ? ? 1.58 7 13 HZ2 A LYS 17 ? ? OE2 A GLU 22 ? ? 1.59 8 17 HG1 A THR 48 ? ? OD1 A ASP 51 ? ? 1.54 9 17 HH12 A ARG 32 ? ? OD1 A ASP 72 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A -7 ? ? 65.17 -80.38 2 1 PRO A 34 ? ? -53.77 99.72 3 1 ASP A 35 ? ? 52.99 77.00 4 2 HIS A -14 ? ? 71.84 -47.77 5 2 SER A -10 ? ? -105.22 48.86 6 2 GLU A 57 ? ? 71.04 -56.70 7 2 PRO A 83 ? ? -56.26 106.27 8 3 ILE A 52 ? ? -57.95 109.72 9 3 PRO A 96 ? ? -44.27 103.60 10 3 PRO A 101 ? ? -76.34 46.39 11 4 HIS A -13 ? ? -153.31 13.20 12 4 SER A -10 ? ? -126.02 -169.78 13 4 SER A 37 ? ? -174.93 -63.11 14 4 SER A 56 ? ? -89.67 -149.34 15 4 PRO A 96 ? ? -37.30 89.19 16 4 TYR A 98 ? ? 57.55 -96.68 17 4 PRO A 101 ? ? -62.03 89.78 18 4 SER A 102 ? ? -89.57 49.37 19 5 PRO A 34 ? ? -35.72 102.32 20 5 ASP A 35 ? ? 56.70 82.35 21 5 GLU A 57 ? ? 174.71 -41.58 22 5 LEU A 71 ? ? -84.92 45.71 23 5 GLN A 73 ? ? 74.90 -17.30 24 5 LEU A 91 ? ? -69.72 87.72 25 5 PRO A 96 ? ? -61.16 78.91 26 5 PRO A 101 ? ? -68.33 -168.36 27 6 MET A 0 ? ? 69.09 99.30 28 6 PRO A 34 ? ? -48.72 93.02 29 6 SER A 37 ? ? -135.22 -146.10 30 7 ASP A 72 ? ? -57.44 -70.55 31 7 ASN A 92 ? ? 56.32 78.86 32 7 PRO A 93 ? ? -68.81 75.40 33 7 ARG A 94 ? ? -153.82 -55.57 34 8 SER A -18 ? ? 47.88 73.87 35 8 VAL A -6 ? ? 38.10 88.05 36 8 SER A -2 ? ? -79.44 46.82 37 8 HIS A -1 ? ? -153.46 -63.51 38 8 GLU A 22 ? ? -83.14 35.87 39 8 SER A 37 ? ? 175.62 -163.41 40 8 ASP A 50 ? ? -157.65 -38.96 41 8 ASP A 72 ? ? -49.83 103.74 42 8 GLN A 73 ? ? 60.34 98.46 43 8 PRO A 83 ? ? -54.15 105.87 44 8 SER A 102 ? ? -75.36 -72.06 45 9 VAL A -6 ? ? 60.33 82.42 46 9 PRO A 83 ? ? -52.62 106.88 47 9 ASP A 95 ? ? -157.91 -59.70 48 10 LEU A -7 ? ? -76.70 -75.50 49 10 SER A 56 ? ? -103.23 -157.42 50 11 MET A 1 ? ? -112.35 73.71 51 11 ARG A 99 ? ? -165.34 96.23 52 11 PRO A 101 ? ? -67.73 49.16 53 12 SER A -10 ? ? -92.99 34.89 54 12 VAL A -6 ? ? 65.01 97.73 55 12 SER A -2 ? ? -76.04 33.65 56 12 GLU A 57 ? ? 70.85 -51.60 57 12 ASN A 92 ? ? -170.21 115.42 58 12 ASP A 95 ? ? -171.05 -58.95 59 12 ARG A 99 ? ? 73.68 93.77 60 13 GLU A 57 ? ? 73.13 -56.29 61 13 PRO A 83 ? ? -57.16 109.14 62 14 PRO A 34 ? ? -32.48 90.17 63 14 SER A 56 ? ? -88.00 -153.46 64 14 PRO A 83 ? ? -56.56 108.25 65 14 PRO A 96 ? ? -39.38 99.87 66 15 PRO A -5 ? ? -58.68 106.01 67 15 HIS A -1 ? ? -85.71 -72.98 68 15 PRO A 34 ? ? -63.61 77.44 69 15 GLU A 57 ? ? 70.75 -55.02 70 15 TYR A 98 ? ? 72.17 119.96 71 15 PRO A 100 ? ? -48.87 150.90 72 16 MET A 1 ? ? -84.90 30.39 73 16 THR A 21 ? ? -97.54 31.54 74 16 THR A 48 ? ? -105.16 -167.99 75 16 GLU A 57 ? ? 69.63 -48.81 76 16 LEU A 91 ? ? -86.46 40.48 77 16 PRO A 93 ? ? -69.96 29.83 78 16 ARG A 94 ? ? -148.74 11.85 79 17 PRO A -5 ? ? -63.13 97.67 80 17 SER A -2 ? ? -67.47 2.40 81 17 SER A 56 ? ? -88.05 -159.23 82 17 PRO A 83 ? ? -53.38 106.46 83 17 PRO A 96 ? ? -65.99 27.43 84 17 ARG A 99 ? ? 74.60 118.16 85 18 HIS A -14 ? ? -167.26 -64.73 86 18 VAL A -6 ? ? 68.38 89.96 87 18 HIS A -1 ? ? 62.35 98.24 88 18 MET A 24 ? ? -118.51 -169.07 89 18 GLU A 57 ? ? 73.14 -55.59 90 19 SER A -17 ? ? -155.64 32.47 91 19 SER A -9 ? ? -79.16 27.89 92 19 ASP A 35 ? ? 86.94 -23.76 93 19 SER A 56 ? ? -100.56 -84.47 94 20 PRO A -5 ? ? -76.58 31.37 95 20 SER A -2 ? ? -142.42 -73.00 96 20 SER A 37 ? ? 53.00 -88.83 97 20 SER A 56 ? ? -86.09 -83.89 98 20 PRO A 83 ? ? -49.95 108.53 #