HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-JUN-08 2K4Z TITLE SOLUTION NMR STRUCTURE OF ALLOCHROMATIUM VINOSUM DSRR: NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET OP5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DSRR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALLOCHROMATIUM VINOSUM; SOURCE 3 ORGANISM_COMMON: ALLOCHROMATIUM VINOSUM; SOURCE 4 ORGANISM_TAXID: 1049; SOURCE 5 GENE: DSRR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15 KEYWDS ISCA/SUFA/HESB LIKE FOLD, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, METAL BINDING PROTEIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,C.DAHL,F.GRIMM,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2K4Z 1 REMARK REVDAT 3 19-FEB-20 2K4Z 1 REMARK REVDAT 2 24-FEB-09 2K4Z 1 VERSN REVDAT 1 22-JUL-08 2K4Z 0 JRNL AUTH C.DAHL,J.R.CORT,F.GRIMM JRNL TITL SOLUTION NMR STRUCTURE OF THE ISCA-LIKE PROTEIN DSRR JRNL TITL 2 INVOLVED IN SULFUR OXIDATION IN ALLOCHROMATIUM VINOSUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX, X-PLOR NIH, CNS REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. (FELIX), SCHWIETERS, REMARK 3 KUSZEWSKI, TJANDRA AND CLORE (X-PLOR NIH), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL REFINEMENT DONE IN EXPLICIT REMARK 3 SOLVENT REMARK 4 REMARK 4 2K4Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100682. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 625 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-10% 13C; U-100% 15N] REMARK 210 DSRR, 93 % H2O, 7 % D2O, 50 MM REMARK 210 TRIS HCL, 500 MM SODIUM CHLORIDE, REMARK 210 5 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 93% H2O/7% D2O; 1 MM [U-100% 13C; REMARK 210 U-100% 15N] DSRR, 100 % D2O, 50 REMARK 210 MM TRIS HCL, 500 MM SODIUM REMARK 210 CHLORIDE, 5 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 100% D2O; 1 MM [U- REMARK 210 100% 13C; U-100% 15N] DSRR, 93 % REMARK 210 H2O, 7 % D2O, 50 MM TRIS HCL, REMARK 210 500 MM SODIUM CHLORIDE, 5 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 93% H2O/7% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D REMARK 210 HNCO; 3D C(CO)NH; 3D HBHA(CO)NH; REMARK 210 3D HCCH-COSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 4D 1H-13C-13C- REMARK 210 1H HMQC NOESY; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, AUTOSTRUCTURE, SPARKY, X REMARK 210 -PLOR NIH REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : FEWEST RESTRAINT VIOLATIONS, REMARK 210 LOWEST ENERGY, BEST GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A -7 -80.38 65.17 REMARK 500 1 PRO A 34 99.72 -53.77 REMARK 500 1 ASP A 35 77.00 52.99 REMARK 500 2 HIS A -14 -47.77 71.84 REMARK 500 2 SER A -10 48.86 -105.22 REMARK 500 2 GLU A 57 -56.70 71.04 REMARK 500 2 PRO A 83 106.27 -56.26 REMARK 500 3 ILE A 52 109.72 -57.95 REMARK 500 3 PRO A 96 103.60 -44.27 REMARK 500 3 PRO A 101 46.39 -76.34 REMARK 500 4 HIS A -13 13.20 -153.31 REMARK 500 4 SER A -10 -169.78 -126.02 REMARK 500 4 SER A 37 -63.11 -174.93 REMARK 500 4 SER A 56 -149.34 -89.67 REMARK 500 4 PRO A 96 89.19 -37.30 REMARK 500 4 TYR A 98 -96.68 57.55 REMARK 500 4 PRO A 101 89.78 -62.03 REMARK 500 4 SER A 102 49.37 -89.57 REMARK 500 5 PRO A 34 102.32 -35.72 REMARK 500 5 ASP A 35 82.35 56.70 REMARK 500 5 GLU A 57 -41.58 174.71 REMARK 500 5 LEU A 71 45.71 -84.92 REMARK 500 5 GLN A 73 -17.30 74.90 REMARK 500 5 LEU A 91 87.72 -69.72 REMARK 500 5 PRO A 96 78.91 -61.16 REMARK 500 5 PRO A 101 -168.36 -68.33 REMARK 500 6 MET A 0 99.30 69.09 REMARK 500 6 PRO A 34 93.02 -48.72 REMARK 500 6 SER A 37 -146.10 -135.22 REMARK 500 7 ASP A 72 -70.55 -57.44 REMARK 500 7 ASN A 92 78.86 56.32 REMARK 500 7 PRO A 93 75.40 -68.81 REMARK 500 7 ARG A 94 -55.57 -153.82 REMARK 500 8 SER A -18 73.87 47.88 REMARK 500 8 VAL A -6 88.05 38.10 REMARK 500 8 SER A -2 46.82 -79.44 REMARK 500 8 HIS A -1 -63.51 -153.46 REMARK 500 8 GLU A 22 35.87 -83.14 REMARK 500 8 SER A 37 -163.41 175.62 REMARK 500 8 ASP A 50 -38.96 -157.65 REMARK 500 8 ASP A 72 103.74 -49.83 REMARK 500 8 GLN A 73 98.46 60.34 REMARK 500 8 PRO A 83 105.87 -54.15 REMARK 500 8 SER A 102 -72.06 -75.36 REMARK 500 9 VAL A -6 82.42 60.33 REMARK 500 9 PRO A 83 106.88 -52.62 REMARK 500 9 ASP A 95 -59.70 -157.91 REMARK 500 10 LEU A -7 -75.50 -76.70 REMARK 500 10 SER A 56 -157.42 -103.23 REMARK 500 11 MET A 1 73.71 -112.35 REMARK 500 REMARK 500 THIS ENTRY HAS 98 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: OP5 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15816 RELATED DB: BMRB DBREF 2K4Z A 1 104 UNP Q9F299 Q9F299_CHRVI 1 104 SEQADV 2K4Z MET A -20 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z GLY A -19 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z SER A -18 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z SER A -17 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z HIS A -16 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z HIS A -15 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z HIS A -14 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z HIS A -13 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z HIS A -12 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z HIS A -11 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z SER A -10 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z SER A -9 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z GLY A -8 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z LEU A -7 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z VAL A -6 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z PRO A -5 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z ARG A -4 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z GLY A -3 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z SER A -2 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z HIS A -1 UNP Q9F299 EXPRESSION TAG SEQADV 2K4Z MET A 0 UNP Q9F299 EXPRESSION TAG SEQRES 1 A 125 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 125 LEU VAL PRO ARG GLY SER HIS MET MET PHE LYS LEU THR SEQRES 3 A 125 PRO ALA ALA ALA GLU GLN VAL LEU LYS ALA ALA LYS GLN SEQRES 4 A 125 GLY GLY THR GLU GLY MET CYS LEU ARG LEU ALA ALA GLY SEQRES 5 A 125 ARG ASN PRO ASP GLY SER ILE ASP TYR ARG MET GLY PHE SEQRES 6 A 125 ASP ASP LEU THR GLU ASP ASP ILE ARG LEU THR SER GLU SEQRES 7 A 125 GLY VAL GLU ILE VAL ILE ALA PRO ASP TYR VAL SER LEU SEQRES 8 A 125 LEU ASP GLN THR THR LEU ASP TYR VAL GLU LEU GLU PRO SEQRES 9 A 125 GLY GLN PHE HIS PHE ILE PHE LEU ASN PRO ARG ASP PRO SEQRES 10 A 125 THR TYR ARG PRO PRO SER GLY GLY HELIX 1 1 THR A 5 GLY A 19 1 15 HELIX 2 2 TYR A 67 ASP A 72 1 6 SHEET 1 A 3 PHE A 2 LEU A 4 0 SHEET 2 A 3 THR A 74 GLU A 82 1 O LEU A 76 N LYS A 3 SHEET 3 A 3 GLN A 85 LEU A 91 -1 O LEU A 91 N THR A 75 SHEET 1 B 4 ILE A 38 ASP A 45 0 SHEET 2 B 4 CYS A 25 ARG A 32 -1 N CYS A 25 O ASP A 45 SHEET 3 B 4 GLU A 60 VAL A 62 1 O VAL A 62 N LEU A 26 SHEET 4 B 4 ARG A 53 THR A 55 -1 N LEU A 54 O ILE A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1