HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-JUN-08 2K52 TITLE STRUCTURE OF UNCHARACTERIZED PROTEIN MJ1198 FROM METHANOCALDOCOCCUS TITLE 2 JANNASCHII. NORTHEAST STRUCTURAL GENOMICS TARGET MJR117B COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN MJ1198; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ1198; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21-23C; SOURCE 9 OTHER_DETAILS: EXPRESSION MEDIA: MJ9 100%N15 5%C13 MJ9 100%N15 SOURCE 10 100%C13 KEYWDS UNCHARACTERIZED PROTEIN, METAL-BINDING, ZINC, ZINC-FINGER, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.ROSSI,M.MAGLAQUI,E.L.FOOTE,K.HAMILTON,C.CICCOSANTI,R.XIAO,R.NAIR, AUTHOR 2 G.SWAPNA,J.K.EVERETT,T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 01-MAY-24 2K52 1 REMARK REVDAT 3 19-FEB-20 2K52 1 REMARK REVDAT 2 24-FEB-09 2K52 1 VERSN REVDAT 1 15-JUL-08 2K52 0 JRNL AUTH P.ROSSI,R.XIAO,T.B.ACTON,G.T.MONTELIONE JRNL TITL STRUCTURE OF UNCHARACTERIZED PROTEIN MJ1198 FROM JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 TARGET MJR117B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K52 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100685. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.682 MM [U-100% 13C 15N] REMARK 210 MJR117B, 20 MM AMMONIUM ACETATE, REMARK 210 100 MM SODIUM CHLORIDE, 0.02 MM REMARK 210 SODIUM AZIDE, 10 MM DTT, 50 UM REMARK 210 DSS, 5 MM CALCIUM CHLORIDE, 1X REMARK 210 PROTEASE INHIBITOR, 90% H2O/ 10% REMARK 210 D2O; 1.226 MM [5% 13C; U- 100% REMARK 210 15N] MJR117B, 20 MM AMMONIUM REMARK 210 ACETATE, 100 MM SODIUM CHLORIDE, REMARK 210 0.02 MM SODIUM AZIDE, 10 MM DTT, REMARK 210 50 UM DSS, 5 MM CALCIUM CHLORIDE, REMARK 210 1X PROTEASE INHIBITOR, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HN(CO) REMARK 210 CA; 3D HBHA(CO)NH; 3D HNCACB; 3D REMARK 210 HN(CA)CO; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D CCH- TOCSY; 3D SIM 13C; REMARK 210 15N NOESY; 3D ARO 13C NOESY; 2D REMARK 210 1H-13C HSQC STEREO; 2D HETNOE; REMARK 210 PSEUDO 2D N15 T1; PSEUDO 2D N15 REMARK 210 T2 (CPMG); 2D 1H-13C HSQC CT ARO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, NMRPIPE, AUTOASSIGN, REMARK 210 SPARKY 3.113, TOPSPIN 2.1, REMARK 210 RPF(AUTOSTRUCTURE) 2.2.1, PSVS REMARK 210 1.3, MOLMOL, PROCHECK, REMARK 210 MOLPROBITY, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT SCATTERING REMARK 210 AND BY NMR. T1/T2 (MS) = 792.1/78.18, TAUC = 9.7(NS) CONSISTENT REMARK 210 WITH MOLECULAR WEIGHT. STRUCTURE DETERMINED BY TRIPLE RESONANCE REMARK 210 NMR SPECTROSCOPY. NOESY ASSIGNMENTS BY CYANA2.1. 20 OF 100 REMARK 210 STRUCTURES LOWEST TARGET FUNCTION SELECTED WITH CYANA2.1. REMARK 210 SELECTED MODELS ARE FURTHER REFINED USING CNS IN EXPLICIT WATER REMARK 210 SHELL (NILGES PROTOCOL WITH PARAM19). ASSIGNMENT STATS AROMATIC REMARK 210 (SC) 92.6%, VL METHYL STEREOSPECIFIC 100%, UNAMBIGUOS SIDECHAIN REMARK 210 NH2 100%. STRUCTURE BASED ON 1088 NOE, 166 DIHE. MAX NOE REMARK 210 VIOLATION: 0.25 A (1MODEL); MAX DIHE VIOLATION: 3.2 DEG. 2 TOTAL REMARK 210 CLOSE CONTACTS PER 20 MODELS. STRUCTURE QUALITY FACTOR > 1.8. REMARK 210 SECONDARY STRUCTURE - BETA STRANDS: (8-17, 20-26, 29- 33, 51-60, REMARK 210 65-70). RMSD 0.4 BACKBONE, 0.8 ALL HEAVY ATOMS. MOLPROBITY CLASH: REMARK 210 16.80/-1.36 (RAW/Z). RPF SCORES ALL ASSIGNED PRECISION: 0.89, F- REMARK 210 MEASURE: 0.93, DP-SCORE: 0.83. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 75 REMARK 465 HIS A 76 REMARK 465 HIS A 77 REMARK 465 HIS A 78 REMARK 465 HIS A 79 REMARK 465 HIS A 80 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 39 -79.69 -99.63 REMARK 500 1 ARG A 64 -0.92 65.20 REMARK 500 3 THR A 14 -64.40 -91.35 REMARK 500 3 ILE A 39 -80.99 -88.01 REMARK 500 3 ILE A 57 -67.88 -93.56 REMARK 500 4 TYR A 19 14.39 -142.65 REMARK 500 4 ILE A 39 -67.68 -104.66 REMARK 500 4 LEU A 73 88.87 -68.91 REMARK 500 5 ILE A 39 -82.17 -87.07 REMARK 500 6 ILE A 39 -74.34 -107.36 REMARK 500 6 ILE A 57 -70.88 -60.29 REMARK 500 7 ILE A 57 -70.93 -95.35 REMARK 500 8 THR A 14 -64.35 -103.76 REMARK 500 8 SER A 40 -62.85 -90.38 REMARK 500 9 ILE A 57 -73.93 -90.11 REMARK 500 11 PRO A 5 93.89 -63.45 REMARK 500 11 PRO A 72 40.51 -73.90 REMARK 500 12 PRO A 5 94.31 -61.96 REMARK 500 12 ILE A 39 -80.26 -104.82 REMARK 500 13 ILE A 39 -78.11 -109.94 REMARK 500 16 PRO A 5 103.21 -58.33 REMARK 500 17 ILE A 39 -73.61 -85.86 REMARK 500 17 ILE A 57 -71.42 -61.73 REMARK 500 18 ILE A 39 -80.46 -110.57 REMARK 500 18 PRO A 72 92.48 -65.71 REMARK 500 19 ILE A 39 -71.83 -63.66 REMARK 500 19 PRO A 72 83.71 -69.22 REMARK 500 20 ILE A 57 -70.12 -64.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MJR117B RELATED DB: TARGETDB REMARK 900 RELATED ID: 15821 RELATED DB: BMRB DBREF 2K52 A 2 73 UNP Q58598 Y1198_METJA 131 202 SEQADV 2K52 MET A 1 UNP Q58598 EXPRESSION TAG SEQADV 2K52 GLU A 74 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 75 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 76 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 77 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 78 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 79 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 80 UNP Q58598 EXPRESSION TAG SEQRES 1 A 80 MET ASP VAL GLU PRO GLY LYS PHE TYR LYS GLY VAL VAL SEQRES 2 A 80 THR ARG ILE GLU LYS TYR GLY ALA PHE ILE ASN LEU ASN SEQRES 3 A 80 GLU GLN VAL ARG GLY LEU LEU ARG PRO ARG ASP MET ILE SEQRES 4 A 80 SER LEU ARG LEU GLU ASN LEU ASN VAL GLY ASP GLU ILE SEQRES 5 A 80 ILE VAL GLN ALA ILE ASP VAL ARG PRO GLU LYS ARG GLU SEQRES 6 A 80 ILE ASP PHE LYS TYR ILE PRO LEU GLU HIS HIS HIS HIS SEQRES 7 A 80 HIS HIS HELIX 1 1 PRO A 35 MET A 38 5 4 HELIX 2 2 ARG A 42 LEU A 46 5 5 SHEET 1 A 6 PHE A 8 GLU A 17 0 SHEET 2 A 6 GLY A 20 ASN A 26 -1 O PHE A 22 N THR A 14 SHEET 3 A 6 VAL A 29 LEU A 33 -1 O VAL A 29 N LEU A 25 SHEET 4 A 6 GLU A 65 TYR A 70 1 O ILE A 66 N LEU A 32 SHEET 5 A 6 GLU A 51 VAL A 59 -1 N ILE A 57 O ASP A 67 SHEET 6 A 6 PHE A 8 GLU A 17 -1 N TYR A 9 O VAL A 54 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1