HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-JUN-08 2K54 TITLE SOLUTION NMR STRUCTURE OF PROTEIN ATU0742 FROM AGROBACTERIUM TITLE 2 TUMEFACIENS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG0) TARGET TITLE 3 ATT8. ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET ATC0727 . COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ATU0742; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: AGR_C_1343, ATU0742; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS PROTEIN OF UNKNOWN FUNCTION, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,A.YEE,A.GUTMANAS,C.FARES,A.SEMESI,C.ARROWSMITH, AUTHOR 2 G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 01-MAY-24 2K54 1 REMARK REVDAT 5 19-FEB-20 2K54 1 REMARK REVDAT 4 23-MAY-12 2K54 1 REMARK REVDAT 3 13-JUL-11 2K54 1 VERSN REVDAT 2 24-FEB-09 2K54 1 VERSN REVDAT 1 19-AUG-08 2K54 0 JRNL AUTH A.LEMAK,A.YEE,A.GUTMANAS,C.FARES,A.SEMESI,C.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF PROTEIN ATC0727 FROM AGROBACTERIUM JRNL TITL 2 TUMEFACIENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES,M.SUNNERHAGEN, REMARK 1 AUTH 2 C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND PROTEIN REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNSSOLVE REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNSSOLVE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K54 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100687. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 450 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] ATU0742, REMARK 210 10 MM MOPS, 450 MM POTASSIUM REMARK 210 CHLORIDE, 10 UM ZNSO4, 10 MM DTT, REMARK 210 0.01 % NAN3, 10 MM BENZAMIDINE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D 1H-15N NOESY; REMARK 210 3D HCCH-TOCSY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C_AROM NOESY; 2D 1H-13C REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, FMC, TALOS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 44.94 -109.54 REMARK 500 1 ASN A 45 161.31 168.45 REMARK 500 1 ARG A 84 -169.29 -123.98 REMARK 500 1 LYS A 90 -84.57 -53.79 REMARK 500 2 ALA A 39 86.40 -162.00 REMARK 500 2 ASN A 45 156.51 167.69 REMARK 500 2 ARG A 84 -168.29 -119.97 REMARK 500 2 LYS A 90 -82.14 -60.43 REMARK 500 3 ASN A 2 -2.32 -155.28 REMARK 500 3 ASN A 45 154.72 162.08 REMARK 500 3 LYS A 90 -87.24 -53.15 REMARK 500 4 ALA A 39 93.35 -162.68 REMARK 500 4 ASN A 45 165.90 166.06 REMARK 500 4 ARG A 84 -163.51 -125.05 REMARK 500 4 LYS A 90 -80.54 -59.61 REMARK 500 5 ASN A 2 -23.14 -172.51 REMARK 500 5 ALA A 39 79.26 -163.44 REMARK 500 5 ASN A 45 152.18 164.82 REMARK 500 5 LYS A 90 -79.41 -72.54 REMARK 500 6 ASN A 45 158.63 167.93 REMARK 500 6 LYS A 90 -71.23 -55.74 REMARK 500 7 ALA A 39 74.06 -158.35 REMARK 500 7 ASN A 45 153.40 169.50 REMARK 500 7 LYS A 90 -84.03 -68.83 REMARK 500 8 ASN A 2 -19.58 177.98 REMARK 500 8 ALA A 39 66.66 -162.71 REMARK 500 8 ASN A 45 157.77 176.18 REMARK 500 8 LYS A 90 -83.34 -75.97 REMARK 500 9 ALA A 39 78.83 -158.33 REMARK 500 9 ASN A 45 158.29 167.05 REMARK 500 9 LYS A 90 -82.41 -76.91 REMARK 500 10 ASN A 45 160.21 163.96 REMARK 500 10 ARG A 84 -160.89 -119.06 REMARK 500 10 LYS A 90 -72.92 -39.07 REMARK 500 11 ALA A 39 56.89 -165.06 REMARK 500 11 ASN A 45 152.57 162.34 REMARK 500 11 LYS A 90 -83.28 -66.76 REMARK 500 12 ASN A 2 25.72 -144.04 REMARK 500 12 ALA A 39 92.62 -163.16 REMARK 500 12 ASN A 45 163.28 168.94 REMARK 500 12 ARG A 84 -162.80 -111.46 REMARK 500 12 LYS A 90 -72.32 -75.25 REMARK 500 12 GLN A 121 98.82 -66.69 REMARK 500 13 ALA A 39 58.92 -148.20 REMARK 500 13 ASN A 45 156.26 168.74 REMARK 500 13 ARG A 84 -161.37 -117.25 REMARK 500 13 LYS A 90 -80.81 -70.02 REMARK 500 14 ALA A 39 91.63 -160.41 REMARK 500 14 ASN A 45 164.67 165.64 REMARK 500 14 ARG A 84 -162.86 -118.84 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATT8 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15823 RELATED DB: BMRB DBREF 2K54 A 1 123 UNP A9CJY7 A9CJY7_AGRT5 1 123 SEQRES 1 A 123 MET ASN SER GLU ILE GLU LEU PRO VAL GLN LYS GLN LEU SEQRES 2 A 123 GLU ALA TYR ASN ALA ARG ASP ILE ASP ALA PHE MET ALA SEQRES 3 A 123 TRP TRP ALA ASP ASP CYS GLN TYR TYR ALA PHE PRO ALA SEQRES 4 A 123 THR LEU LEU ALA GLY ASN ALA ALA GLU ILE ARG VAL ARG SEQRES 5 A 123 HIS ILE GLU ARG PHE LYS GLU PRO ASP LEU TYR GLY GLU SEQRES 6 A 123 LEU LEU THR ARG VAL ILE VAL GLY ASN VAL VAL ILE ASP SEQRES 7 A 123 HIS GLU THR VAL THR ARG ASN PHE PRO GLU GLY LYS GLY SEQRES 8 A 123 GLU VAL ASP VAL ALA CYS ILE TYR GLU VAL GLU ASN GLY SEQRES 9 A 123 ARG ILE ALA LYS ALA TRP PHE LYS ILE GLY GLU PRO ARG SEQRES 10 A 123 ILE VAL SER GLN LYS SER HELIX 1 1 ASN A 2 ARG A 19 1 18 HELIX 2 2 ASP A 20 TRP A 27 1 8 HELIX 3 3 ASN A 45 PHE A 57 1 13 HELIX 4 4 ILE A 118 LYS A 122 5 5 SHEET 1 A 6 THR A 40 GLY A 44 0 SHEET 2 A 6 TRP A 28 ALA A 36 -1 N TYR A 34 O LEU A 42 SHEET 3 A 6 ARG A 105 ARG A 117 1 O ILE A 106 N ALA A 29 SHEET 4 A 6 GLU A 92 GLU A 102 -1 N ILE A 98 O TRP A 110 SHEET 5 A 6 VAL A 75 THR A 83 -1 N VAL A 82 O VAL A 93 SHEET 6 A 6 TYR A 63 VAL A 72 -1 N TYR A 63 O THR A 83 CISPEP 1 PHE A 37 PRO A 38 1 -4.21 CISPEP 2 PHE A 37 PRO A 38 2 -0.88 CISPEP 3 PHE A 37 PRO A 38 3 -4.87 CISPEP 4 PHE A 37 PRO A 38 4 -1.20 CISPEP 5 PHE A 37 PRO A 38 5 -1.52 CISPEP 6 PHE A 37 PRO A 38 6 -1.84 CISPEP 7 PHE A 37 PRO A 38 7 0.55 CISPEP 8 PHE A 37 PRO A 38 8 -7.63 CISPEP 9 PHE A 37 PRO A 38 9 -5.93 CISPEP 10 PHE A 37 PRO A 38 10 -1.55 CISPEP 11 PHE A 37 PRO A 38 11 -2.24 CISPEP 12 PHE A 37 PRO A 38 12 -8.67 CISPEP 13 PHE A 37 PRO A 38 13 -7.87 CISPEP 14 PHE A 37 PRO A 38 14 0.24 CISPEP 15 PHE A 37 PRO A 38 15 -9.58 CISPEP 16 PHE A 37 PRO A 38 16 -7.51 CISPEP 17 PHE A 37 PRO A 38 17 -4.00 CISPEP 18 PHE A 37 PRO A 38 18 -9.35 CISPEP 19 PHE A 37 PRO A 38 19 -4.08 CISPEP 20 PHE A 37 PRO A 38 20 2.52 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1