HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-JUN-08 2K5J TITLE SOLUTION STRUCTURE OF PROTEIN YIIF FROM SHIGELLA FLEXNERI SEROTYPE 5B TITLE 2 (STRAIN 8401) . NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SFT1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YIIF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 5 STR. 8401; SOURCE 3 ORGANISM_TAXID: 373384; SOURCE 4 GENE: YIIF, SFV_3605; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 GOLD MAGIC KEYWDS NESG, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.WU,K.SINGARAPU,A.SEMESI,A.YEE,S.BANSAL,J.PRESTEGARD,C.ARROWSMITH, AUTHOR 2 T.SZYPERSKI,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 5 08-MAY-24 2K5J 1 REMARK REVDAT 4 14-JUN-23 2K5J 1 DBREF REVDAT 3 19-FEB-20 2K5J 1 REMARK REVDAT 2 24-FEB-09 2K5J 1 VERSN REVDAT 1 26-AUG-08 2K5J 0 JRNL AUTH Y.WU,K.SINGARAPU,A.SEMESI,A.YEE,S.BANSAL,J.PRESTEGARD, JRNL AUTH 2 C.ARROWSMITH,T.SZYPERSKI JRNL TITL SOLUTION STRUCTURE OF PROTEIN YIIF FROM SHIGELLA FLEXNERI JRNL TITL 2 SEROTYPE 5B (STRAIN 8401) . NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET SFT1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN, CNS REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K5J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000100702. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O; 0.8 MM REMARK 210 [U-10% 13C; U-100% 15N] PROTEIN, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 4,3D, GFT HNNCABCA; 4,3D, GFT REMARK 210 CABCACONNH; 4,3D, GFT HCCH COSY; REMARK 210 4,3D, GFT HAHB(CABCACO)NNH; 3D, REMARK 210 15N-13C RESOLVEDSIMULTANIOUS REMARK 210 NOESY; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE, CYANA, NMRPIPE, REMARK 210 XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 217 H VAL B 220 1.53 REMARK 500 O ILE A 12 H LEU B 214 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 4 99.55 50.90 REMARK 500 1 GLN A 52 -43.91 -162.26 REMARK 500 1 ALA A 54 -9.92 -144.75 REMARK 500 1 GLN A 63 -23.17 -157.94 REMARK 500 1 CYS A 65 178.74 49.48 REMARK 500 1 GLU A 66 75.30 48.76 REMARK 500 1 GLN A 73 -93.16 -138.69 REMARK 500 1 ARG A 74 -128.66 50.64 REMARK 500 1 LYS A 75 -105.34 44.79 REMARK 500 1 ALA B 205 7.75 54.60 REMARK 500 1 ASP B 208 30.18 -171.23 REMARK 500 1 LEU B 216 -164.82 -120.67 REMARK 500 1 ASN B 218 -74.04 21.88 REMARK 500 1 ASN B 232 61.53 61.02 REMARK 500 1 GLN B 250 31.13 -87.42 REMARK 500 1 ALA B 254 83.67 -54.34 REMARK 500 1 VAL B 258 74.60 -167.56 REMARK 500 1 GLN B 263 111.34 63.39 REMARK 500 1 GLU B 267 115.88 55.88 REMARK 500 1 GLN B 273 -109.88 -137.32 REMARK 500 1 ARG B 274 -89.50 41.31 REMARK 500 1 LYS B 275 -94.20 -75.11 REMARK 500 1 LEU B 276 -169.69 43.80 REMARK 500 1 GLU B 278 48.90 -147.70 REMARK 500 1 GLU B 279 159.65 55.51 REMARK 500 2 LEU A 4 13.59 -156.31 REMARK 500 2 ALA A 5 -79.94 -148.07 REMARK 500 2 MET A 9 -165.29 43.15 REMARK 500 2 GLN A 50 20.19 -73.54 REMARK 500 2 THR A 53 74.37 45.36 REMARK 500 2 THR A 56 85.13 49.29 REMARK 500 2 VAL A 58 151.67 -49.39 REMARK 500 2 PRO A 59 156.32 -45.16 REMARK 500 2 TRP A 62 37.47 -153.57 REMARK 500 2 GLU A 67 -20.95 -151.85 REMARK 500 2 ASN B 202 -161.25 45.52 REMARK 500 2 SER B 203 84.38 56.05 REMARK 500 2 ALA B 205 -173.43 59.10 REMARK 500 2 ILE B 207 97.18 -54.98 REMARK 500 2 ASP B 208 41.66 -148.19 REMARK 500 2 MET B 209 -173.06 -68.15 REMARK 500 2 ASN B 232 60.53 61.83 REMARK 500 2 GLN B 250 27.74 -69.46 REMARK 500 2 GLN B 252 86.42 45.29 REMARK 500 2 GLN B 263 47.03 -93.28 REMARK 500 2 GLU B 267 -44.52 -155.58 REMARK 500 2 ASP B 268 77.51 43.59 REMARK 500 2 VAL B 270 -5.06 -150.90 REMARK 500 2 GLU B 271 -179.22 -51.25 REMARK 500 2 ARG B 277 83.10 62.50 REMARK 500 REMARK 500 THIS ENTRY HAS 485 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SFT1 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15839 RELATED DB: BMRB DBREF 2K5J A 1 80 UNP Q0SZ80 Q0SZ80_SHIF8 1 80 DBREF 2K5J B 201 280 UNP Q0SZ80 Q0SZ80_SHIF8 1 80 SEQRES 1 A 80 MET ASN SER LEU ALA GLY ILE ASP MET GLY ARG ILE LEU SEQRES 2 A 80 LEU ASP LEU SER ASN GLU VAL ILE LYS GLN LEU ASP ASP SEQRES 3 A 80 LEU GLU VAL GLN ARG ASN LEU PRO ARG ALA ASP LEU LEU SEQRES 4 A 80 ARG GLU ALA VAL ASP GLN TYR LEU ILE ASN GLN SER GLN SEQRES 5 A 80 THR ALA ARG THR SER VAL PRO GLY ILE TRP GLN GLY CYS SEQRES 6 A 80 GLU GLU ASP GLY VAL GLU TYR GLN ARG LYS LEU ARG GLU SEQRES 7 A 80 GLU TRP SEQRES 1 B 80 MET ASN SER LEU ALA GLY ILE ASP MET GLY ARG ILE LEU SEQRES 2 B 80 LEU ASP LEU SER ASN GLU VAL ILE LYS GLN LEU ASP ASP SEQRES 3 B 80 LEU GLU VAL GLN ARG ASN LEU PRO ARG ALA ASP LEU LEU SEQRES 4 B 80 ARG GLU ALA VAL ASP GLN TYR LEU ILE ASN GLN SER GLN SEQRES 5 B 80 THR ALA ARG THR SER VAL PRO GLY ILE TRP GLN GLY CYS SEQRES 6 B 80 GLU GLU ASP GLY VAL GLU TYR GLN ARG LYS LEU ARG GLU SEQRES 7 B 80 GLU TRP HELIX 1 1 SER A 17 ASN A 32 1 16 HELIX 2 2 PRO A 34 SER A 51 1 18 HELIX 3 3 ASN B 218 ASN B 232 1 15 HELIX 4 4 PRO B 234 GLN B 250 1 17 SHEET 1 A 2 ARG A 11 LEU A 16 0 SHEET 2 A 2 GLY B 210 ASP B 215 -1 O LEU B 214 N ILE A 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1