data_2K5P # _entry.id 2K5P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2K5P pdb_00002k5p 10.2210/pdb2k5p/pdb RCSB RCSB100708 ? ? BMRB 15844 ? ? WWPDB D_1000100708 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified GmR137 TargetDB . unspecified 15844 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2K5P _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-30 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mani, R.' 1 'Wang, H.' 2 'Jiang, M.' 3 'Magliaqui, M.' 4 'Xiao, R.' 5 'Nair, R.' 6 'Baran, M.C.' 7 'Gurla, S.V.T.' 8 'Acton, T.B.' 9 'Rost, B.' 10 'Montelione, G.T.' 11 'Northeast Structural Genomics Consortium (NESG)' 12 # _citation.id primary _citation.title ;NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137 ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mani, R.' 1 ? primary 'Wang, H.' 2 ? primary 'Jiang, M.' 3 ? primary 'Magliaqui, M.' 4 ? primary 'Xiao, R.' 5 ? primary 'Nair, R.' 6 ? primary 'Baran, M.C.' 7 ? primary 'Gurla, S.V.T.' 8 ? primary 'Acton, T.B.' 9 ? primary 'Rost, B.' 10 ? primary 'Montelione, G.T.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'thiamine-biosynthesis protein' _entity.formula_weight 8530.462 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ThiS protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MNLTVNGKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGGKLEHHHHHH _entity_poly.pdbx_seq_one_letter_code_can MNLTVNGKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGGKLEHHHHHH _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier GmR137 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 LEU n 1 4 THR n 1 5 VAL n 1 6 ASN n 1 7 GLY n 1 8 LYS n 1 9 PRO n 1 10 SER n 1 11 THR n 1 12 VAL n 1 13 ASP n 1 14 GLY n 1 15 ALA n 1 16 GLU n 1 17 SER n 1 18 LEU n 1 19 ASN n 1 20 VAL n 1 21 THR n 1 22 GLU n 1 23 LEU n 1 24 LEU n 1 25 SER n 1 26 ALA n 1 27 LEU n 1 28 LYS n 1 29 VAL n 1 30 ALA n 1 31 GLN n 1 32 ALA n 1 33 GLU n 1 34 TYR n 1 35 VAL n 1 36 THR n 1 37 VAL n 1 38 GLU n 1 39 LEU n 1 40 ASN n 1 41 GLY n 1 42 GLU n 1 43 VAL n 1 44 LEU n 1 45 GLU n 1 46 ARG n 1 47 GLU n 1 48 ALA n 1 49 PHE n 1 50 ASP n 1 51 ALA n 1 52 THR n 1 53 THR n 1 54 VAL n 1 55 LYS n 1 56 ASP n 1 57 GLY n 1 58 ASP n 1 59 ALA n 1 60 VAL n 1 61 GLU n 1 62 PHE n 1 63 LEU n 1 64 TYR n 1 65 PHE n 1 66 MET n 1 67 GLY n 1 68 GLY n 1 69 GLY n 1 70 LYS n 1 71 LEU n 1 72 GLU n 1 73 HIS n 1 74 HIS n 1 75 HIS n 1 76 HIS n 1 77 HIS n 1 78 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Geobacter _entity_src_gen.pdbx_gene_src_gene Gmet_1567 _entity_src_gen.gene_src_species metallireducens _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacter metallireducens GS-15' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269799 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species coli _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 21-23C' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q39VC5_GEOMG _struct_ref.pdbx_db_accession Q39VC5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MNLTVNGKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGGK _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2K5P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 70 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q39VC5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 70 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 70 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2K5P LEU A 71 ? UNP Q39VC5 ? ? 'expression tag' 71 1 1 2K5P GLU A 72 ? UNP Q39VC5 ? ? 'expression tag' 72 2 1 2K5P HIS A 73 ? UNP Q39VC5 ? ? 'expression tag' 73 3 1 2K5P HIS A 74 ? UNP Q39VC5 ? ? 'expression tag' 74 4 1 2K5P HIS A 75 ? UNP Q39VC5 ? ? 'expression tag' 75 5 1 2K5P HIS A 76 ? UNP Q39VC5 ? ? 'expression tag' 76 6 1 2K5P HIS A 77 ? UNP Q39VC5 ? ? 'expression tag' 77 7 1 2K5P HIS A 78 ? UNP Q39VC5 ? ? 'expression tag' 78 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '(4,3)D GFT-HNNCABCA' 1 4 1 '(4,3)D GFT-CABCA(CO)NHN' 1 5 1 '(4,3)D GFT-HABCAB(CO)NHN' 1 6 1 '3D CBCA(CO)NH' 1 7 1 '3D HBHA(CO)NH' 1 8 1 '3D HNCO' 1 9 1 '3D HCCH-TOCSY' 1 10 1 3D-CCH-TOCSY 1 11 1 '3D 1H-15N NOESY' 1 12 1 '3D 1H-13C aliph NOESY' 1 13 1 '3D 1H-13C arom NOESY' 1 14 1 '3D HCCH-COSY' 2 15 2 '2D 1H-15N HSQC' 1 16 1 '2D 1H-15N HSQC' 1 17 1 '2D 1H-13C HSQC' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 '5 mM CaCl2, 100mM NaCl' 6.5 ambient ? 293 K 2 '5 mM CaCl2, 100mM NaCl' 6.5 ambient ? 293 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1.06 mM [U-100% 13C; U-100% 15N] GmR137, THiS protein, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1.26 mM [U-10% 13C; U-99% 15N] GmR137, THiS protein, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 600 Varian INOVA 2 'Varian INOVA' 500 Varian INOVA 3 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2K5P _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;The structure was obtained using triple resonance NMR spectroscopy. GFT-NMR experiments were used for backbone resonance assignments and conventional 3D TOCSY and COSY experiments were used to obtain sidechain resonance assignments. Automated NOESY assignments were made using AUTOSTRUCTURE and CYANA-2.1. Dihedral angle constraints were obtained from TALOS. The structure calculation was done excluding 5 HIS from 8-residue C-terminal tag (LEHHHHHH). Completeness of assignments excluding 5-HIS: Backbone - 100%, Sidechain (aliphatic) - 99% Sidechain (aromatic) - 96%. The assignments were validated using AVS software. Final structure quality factros (excluding 5 HIS) determined using PSVS-v1.3: Ordered residues are defiend as: 1-13, 18-29, 32-63. (a) RMSD (ordered residues) all backbone atoms: 0.7A and heavy atoms: 1.2A. (b) Ramachandran statistics for ordered residues: Most favored region: 82.8%, additionally allowed regions: 17.0% generously allowed region: 0.1%, disallowed regions: 0.1%. (c) Procheck scores for ordered residues (RAW/Z-): Phi/psi -0.58/-1.97, all -0.48/-2.84, (d) MolProbity clashscores (RAW/Z-) 17.03/-1.40, (e) RPF scores for the goodness of the fit to NOESY data: Recall - 0.99, Precision - 0.942, F-measure - 0.966 and final dp score - 0.88. (f) Number of close contacts for 20 models: 6, RMS deviation for bond angles - 0.6deg, RMS deviation for bond lengths - 0.009A. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 140 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2K5P _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.2 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method 'PSVS software' # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2K5P _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 2.0.6 1 'Huang, Tejero, Powers and Montelione' 'structure solution' AutoStructure 2.2.1 2 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.1 3 'Zimmerman, Moseley, Kulikowski and Montelione' 'chemical shift assignment' AutoAssign 2.4.0 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'CASP target' _exptl.entry_id 2K5P _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2K5P _struct.title ;NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137 ; _struct.pdbx_model_details 'CASP target' _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2K5P _struct_keywords.pdbx_keywords 'BIOSYNTHETIC PROTEIN' _struct_keywords.text ;NESG, GmR137, Geobacter metallireducens, Thiamine Biosynthesis, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, BIOSYNTHETIC PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 20 ? LYS A 28 ? VAL A 20 LYS A 28 1 ? 9 HELX_P HELX_P2 2 GLU A 47 ? THR A 52 ? GLU A 47 THR A 52 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 2 ? VAL A 5 ? ASN A 2 VAL A 5 A 2 LYS A 8 ? THR A 11 ? LYS A 8 THR A 11 B 1 LEU A 18 ? ASN A 19 ? LEU A 18 ASN A 19 B 2 THR A 53 ? VAL A 54 ? THR A 53 VAL A 54 C 1 GLU A 42 ? VAL A 43 ? GLU A 42 VAL A 43 C 2 VAL A 37 ? LEU A 39 ? VAL A 37 LEU A 39 C 3 VAL A 60 ? PHE A 62 ? VAL A 60 PHE A 62 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 3 ? N LEU A 3 O SER A 10 ? O SER A 10 B 1 2 N LEU A 18 ? N LEU A 18 O VAL A 54 ? O VAL A 54 C 1 2 O GLU A 42 ? O GLU A 42 N LEU A 39 ? N LEU A 39 C 2 3 N GLU A 38 ? N GLU A 38 O GLU A 61 ? O GLU A 61 # _atom_sites.entry_id 2K5P _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 MET 66 66 66 MET MET A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 HIS 73 73 73 HIS HIS A . n A 1 74 HIS 74 74 74 HIS HIS A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 HIS 76 76 76 HIS HIS A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 HIS 78 78 78 HIS HIS A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-19 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 4 'Structure model' 'Database references' 7 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_status 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif 7 4 'Structure model' database_2 8 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.01 _pdbx_nmr_ensemble_rms.distance_rms_dev_error ? _pdbx_nmr_ensemble_rms.entry_id 2K5P _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'GmR137, THiS protein' 1.06 mM '[U-100% 13C; U-100% 15N]' 1 'GmR137, THiS protein' 1.26 mM '[U-10% 13C; U-99% 15N]' 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2K5P _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 969 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 144 _pdbx_nmr_constraints.NOE_long_range_total_count 269 _pdbx_nmr_constraints.NOE_medium_range_total_count 207 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 349 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 41 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 41 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 15 ? ? 62.84 92.53 2 1 SER A 17 ? ? 61.63 114.14 3 1 LYS A 28 ? ? 67.02 82.52 4 1 ASN A 40 ? ? 56.47 18.87 5 1 MET A 66 ? ? 69.20 167.16 6 1 LYS A 70 ? ? -167.05 103.73 7 1 HIS A 73 ? ? -141.46 -47.76 8 1 HIS A 74 ? ? 65.60 121.33 9 1 HIS A 75 ? ? -81.59 43.50 10 2 PRO A 9 ? ? -60.85 96.15 11 2 SER A 17 ? ? 64.51 143.64 12 2 ALA A 30 ? ? -79.03 36.38 13 2 VAL A 35 ? ? -68.27 89.00 14 2 ASP A 56 ? ? -68.11 93.35 15 2 HIS A 74 ? ? 58.88 19.92 16 3 SER A 17 ? ? -164.32 112.38 17 3 LYS A 28 ? ? 65.78 76.49 18 3 LYS A 55 ? ? -112.00 -167.43 19 3 HIS A 74 ? ? -56.19 93.70 20 3 HIS A 75 ? ? -76.95 -168.68 21 4 LYS A 28 ? ? 57.49 89.02 22 4 VAL A 35 ? ? -58.70 94.21 23 4 ASP A 56 ? ? -58.65 105.61 24 4 TYR A 64 ? ? 73.91 -37.08 25 5 LYS A 28 ? ? 63.10 81.65 26 5 GLU A 33 ? ? -140.86 -32.45 27 5 LYS A 70 ? ? -67.47 94.77 28 5 HIS A 74 ? ? -63.42 86.54 29 5 HIS A 75 ? ? 72.84 162.22 30 5 HIS A 77 ? ? -120.77 -160.00 31 6 SER A 17 ? ? 53.48 71.19 32 6 LYS A 28 ? ? 57.51 86.81 33 6 TYR A 64 ? ? 70.96 -19.72 34 7 ALA A 32 ? ? -146.05 -62.16 35 7 TYR A 64 ? ? 68.05 -3.28 36 7 LYS A 70 ? ? -51.09 104.25 37 7 GLU A 72 ? ? 62.95 92.21 38 8 ALA A 15 ? ? -59.84 105.74 39 8 LYS A 28 ? ? 69.25 88.97 40 8 TYR A 64 ? ? 67.06 -3.28 41 8 MET A 66 ? ? 72.63 103.81 42 8 HIS A 74 ? ? -62.86 87.32 43 8 HIS A 76 ? ? 65.63 128.21 44 9 ASP A 13 ? ? 59.71 174.50 45 9 LYS A 28 ? ? 66.77 74.04 46 9 TYR A 64 ? ? -78.51 34.66 47 9 PHE A 65 ? ? 66.41 149.50 48 9 LYS A 70 ? ? 66.44 158.33 49 9 HIS A 73 ? ? -170.99 -54.30 50 9 HIS A 74 ? ? -179.97 66.58 51 9 HIS A 76 ? ? -67.25 11.18 52 10 LYS A 28 ? ? 64.95 85.54 53 10 GLN A 31 ? ? 61.99 80.46 54 10 HIS A 73 ? ? 62.82 162.68 55 10 HIS A 74 ? ? -133.48 -58.49 56 11 ASN A 6 ? ? 59.29 15.04 57 11 PRO A 9 ? ? -65.82 99.50 58 11 SER A 17 ? ? -160.62 106.40 59 11 LYS A 28 ? ? 63.04 84.80 60 11 THR A 52 ? ? -63.20 98.74 61 11 TYR A 64 ? ? -81.63 33.94 62 11 LYS A 70 ? ? 66.58 116.35 63 11 HIS A 73 ? ? -175.11 122.59 64 12 LYS A 70 ? ? 67.99 113.12 65 13 GLN A 31 ? ? -83.92 45.69 66 13 TYR A 64 ? ? -84.00 46.78 67 13 LYS A 70 ? ? 66.92 118.64 68 13 HIS A 73 ? ? 63.14 -174.11 69 14 GLU A 16 ? ? -101.81 -60.74 70 14 LYS A 28 ? ? 60.17 73.45 71 14 GLN A 31 ? ? 71.12 37.58 72 14 TYR A 64 ? ? -56.56 -2.26 73 14 PHE A 65 ? ? -69.10 94.32 74 14 LEU A 71 ? ? 31.07 90.72 75 15 PRO A 9 ? ? -57.65 95.74 76 15 LYS A 28 ? ? 60.06 85.56 77 15 GLN A 31 ? ? -84.81 40.45 78 15 ASP A 56 ? ? -56.98 102.82 79 15 GLU A 72 ? ? -59.37 95.47 80 15 HIS A 75 ? ? 68.35 164.59 81 16 SER A 17 ? ? 49.29 91.96 82 16 LYS A 28 ? ? 68.89 87.64 83 16 ASN A 40 ? ? 59.21 16.08 84 16 ASP A 56 ? ? -78.97 42.54 85 16 HIS A 76 ? ? 62.80 111.40 86 17 GLU A 16 ? ? -91.23 -62.65 87 17 SER A 17 ? ? -171.53 104.21 88 17 ALA A 59 ? ? -141.22 42.46 89 17 VAL A 60 ? ? -56.20 102.20 90 17 TYR A 64 ? ? 70.36 -19.61 91 17 GLU A 72 ? ? 57.03 -163.74 92 17 HIS A 74 ? ? 67.59 123.72 93 18 GLU A 16 ? ? -79.50 -73.80 94 18 GLN A 31 ? ? -94.07 30.77 95 18 ASN A 40 ? ? 58.53 15.84 96 18 LEU A 71 ? ? -96.56 54.85 97 18 HIS A 73 ? ? 38.95 58.07 98 18 HIS A 77 ? ? -178.06 138.32 99 19 SER A 17 ? ? 49.45 95.99 100 19 GLN A 31 ? ? 60.69 72.44 101 19 LYS A 55 ? ? -167.99 87.99 102 19 ASP A 56 ? ? 66.02 139.60 103 19 ALA A 59 ? ? -151.52 72.55 104 19 TYR A 64 ? ? 73.31 -31.39 105 19 LYS A 70 ? ? 67.80 144.75 106 19 HIS A 73 ? ? -119.04 -77.65 107 19 HIS A 76 ? ? 67.11 104.42 108 20 GLU A 16 ? ? -135.91 -72.26 109 20 TYR A 34 ? ? -86.64 44.78 110 20 MET A 66 ? ? 54.98 88.75 111 20 LEU A 71 ? ? 66.78 -172.55 112 20 HIS A 75 ? ? 65.15 153.75 113 20 HIS A 76 ? ? -55.48 99.87 #