HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-JUN-08 2K5R TITLE SOLUTION NMR STRUCTURE OF XF2673 FROM XYLELLA FASTIDIOSA. NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET XFR39 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN XF2673; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RESIDUE 90-97 REPRESENT A NON-NATIVE PURIFICATION TAG COMPND 6 (LEHHHHHH) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XYLELLA FASTIDIOSA TEMECULA1; SOURCE 3 ORGANISM_TAXID: 183190; SOURCE 4 GENE: PD_2037; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: XFR39-21.3; SOURCE 9 OTHER_DETAILS: C-TERMINAL TAG LEHHHHHH. THE PROTEIN IS A MONOMER BY SOURCE 10 GEL FILTRATION CHROMATOGRAPHY AND STATIC LIGHT SCATTERING KEYWDS SOLUTION NMR STRUCTURE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.TANG,H.WANG,M.JIANG,M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA, AUTHOR 2 T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2K5R 1 REMARK REVDAT 3 19-FEB-20 2K5R 1 REMARK SEQADV REVDAT 2 24-FEB-09 2K5R 1 VERSN REVDAT 1 26-AUG-08 2K5R 0 JRNL AUTH Y.TANG,H.WANG,M.JIANG,M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN, JRNL AUTH 2 G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF XF2673 FROM XYLELLA FASTIDIOSA. JRNL TITL 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET XFR39 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1591 COMFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 100 DIHEDRAL ANGLE CONSTRAINTS, AND 42 HYDROGEN REMARK 3 BOND CONSTRAINTS (18.8 CONSTRAINTS PER RESIDUE, 4.4 LONG RANGE REMARK 3 CONSTRAINTS PER RESIDUE, COMPUTED FOR RESIDUES 1 TO 97 BY PSVS REMARK 3 1.3) STRUCTURE DETERMINATION WAS PERFORMED ITERATIVELY USING REMARK 3 AUTOSTRUCTURE AND CYANA. THE 20 LOWEST ENERGY STRUCTURES OUT OF REMARK 3 100 WERE FURTHER REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY REMARK 3 MINIMIZATION IN EXPLICIT WATER (CNS). THE C-TERMINAL HIS TAG REMARK 3 RESIDUES OF THE PROTEIN (HHHHHH) WERE INCLUDED IN ALL STRUCTURE REMARK 3 CALCULATIONS AND HAVE BEEN INCLUDED IN THIS DEPOSITION. REMARK 3 COORDINATES FOR THE FOLLOWING RESIDUES ARE NOT WELL DETERMINED: REMARK 3 1-17, 67-68, 88-97. THE STRUCTURE WAS DETERMINED USING TRIPLE REMARK 3 RESONANCE NMR SPECTROSCOPY. AUTOMATED BACKBONE ASSIGNMENTS WERE REMARK 3 MADE USING AUTOASSIGN AND THE SIDE CHAIN ASSIGNMENTS WERE REMARK 3 COMPLETED MANUALLY. AUTOMATIC NOESY ASSIGNMENTS AS WELL AS REMARK 3 DISTANCE, DIHEDRAL ANGLE (TALOS) AND HYDROGEN BOND CONSTRAINTS REMARK 3 WERE DETERMINED USING CYANA. COMPLETENESS OF NMR ASSIGNMENT: REMARK 3 BACKBONE, 91.81%, SIDE CHAIN, 80.87%, AROMATICS, 60.00%, REMARK 3 STEREOSPECIFIC METHYL, 82.35%, FINAL STRUCTURE QUALITY FACTORS REMARK 3 (FOR RESIDUE 1-97 PSVS 1.3), WHERE ORDERED RESIDUE RANGES REMARK 3 COMPRISE: 18-66, 69-87. (A) RMSD (ORDERED RESIDUES): BB 0.82, REMARK 3 HEAVY ATOM: 1.46 (B) RAMACHANDRAN STATISTICS FOR ORDERED REMARK 3 RESIDUES: MOST FAVORED, 92.8%, ADDITIONALLY ALLOWED: 7.2%, REMARK 3 GENEROUSLY ALLOWED : 0.0%, DISALLOWED, 0.0%. (C) PROCHECK SCORES REMARK 3 FOR ORDERED RESIDUES (RAW/Z): PHI-PSI, -0.30/-0.87, ALL , -0.26/- REMARK 3 1.54. (D) MOLPROBITY CLASH SCORE (RAW/Z): 16.58/-1.32. (E) RPF REMARK 3 SCORES FOR GOODNESS OF FIT TO NOESY DATA (RESIDUE 1-97): RECALL, REMARK 3 1, PRECISION, 0.979, F-MEASURE, 0.99, DP-SCORE, 0.823. REMARK 4 REMARK 4 2K5R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000100710. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 XFR39, 20 MM MES, 100 MM NACL, 5 REMARK 210 MM CACL2, 10 MM DTT, 0.02 % NAN3, REMARK 210 50 UM DSS, 95% H2O/5% D2O; 1.0 REMARK 210 MM [U-5% 13C; U-100% 15N] XFR39, REMARK 210 20 MM MES, 100 MM NACL, 5 MM REMARK 210 CACL2, 10 MM DTT, 0.02 % NAN3, REMARK 210 50 UM DSS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC_ARMATIC; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HNCACB; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D CCH-TOCSY; 3D HNCO; 3D REMARK 210 1H-15N NOESY; 3D SIMUTAEOUS REMARK 210 NOESY; 3D 1H-13C NOESY AROMATIC; REMARK 210 2D 1H-13C HSQC_HIGH RESOLUTION REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.2.1, SPARKY 3.110, REMARK 210 AUTOSTRUCTURE 2.2.1, CYANA 2.1, REMARK 210 NMRPIPE 2.3, PSVS 1.3, PDBSTAT REMARK 210 5.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 12 63.93 -68.51 REMARK 500 1 PRO A 17 107.01 -56.37 REMARK 500 1 ASP A 67 -49.69 72.34 REMARK 500 1 SER A 68 -20.59 166.02 REMARK 500 2 PRO A 17 -167.53 -67.75 REMARK 500 2 ASP A 67 -87.10 58.97 REMARK 500 2 SER A 68 10.87 -147.11 REMARK 500 2 ASP A 88 107.46 -54.14 REMARK 500 3 ASP A 2 40.00 -81.09 REMARK 500 3 LEU A 5 -71.83 -80.74 REMARK 500 3 LEU A 6 -15.50 64.20 REMARK 500 3 HIS A 94 106.72 -52.67 REMARK 500 4 ARG A 15 86.59 59.75 REMARK 500 4 PRO A 17 110.87 -33.57 REMARK 500 4 LEU A 72 31.42 -81.78 REMARK 500 4 HIS A 92 -12.31 -153.69 REMARK 500 4 HIS A 94 88.31 -66.69 REMARK 500 4 HIS A 95 33.96 -76.12 REMARK 500 4 HIS A 96 40.91 -152.40 REMARK 500 5 ARG A 15 80.51 60.45 REMARK 500 5 ASP A 67 -81.39 59.98 REMARK 500 5 ASP A 88 -152.91 -155.25 REMARK 500 5 LYS A 89 -176.44 -68.62 REMARK 500 5 LEU A 90 44.95 -76.43 REMARK 500 6 PRO A 87 90.81 -68.47 REMARK 500 6 HIS A 95 -32.97 72.22 REMARK 500 7 ILE A 83 97.66 -69.18 REMARK 500 7 ALA A 84 4.69 -66.17 REMARK 500 9 LEU A 6 79.69 -67.64 REMARK 500 9 PRO A 12 88.21 -68.18 REMARK 500 9 ASP A 67 -79.84 62.50 REMARK 500 9 SER A 68 12.97 -158.71 REMARK 500 10 PRO A 12 39.10 -75.54 REMARK 500 10 ASP A 88 25.14 -79.09 REMARK 500 11 ASP A 67 -78.64 61.36 REMARK 500 11 SER A 68 23.56 -169.61 REMARK 500 11 PRO A 70 90.26 -65.07 REMARK 500 11 PRO A 87 105.02 -49.45 REMARK 500 11 LYS A 89 -32.81 73.09 REMARK 500 11 GLU A 91 -87.77 63.71 REMARK 500 11 HIS A 92 48.19 32.82 REMARK 500 11 HIS A 93 94.19 -69.25 REMARK 500 12 PRO A 12 95.03 -63.38 REMARK 500 12 PRO A 17 107.59 -52.96 REMARK 500 12 PRO A 70 90.51 -64.62 REMARK 500 12 ALA A 84 6.84 -68.65 REMARK 500 13 HIS A 7 3.14 -68.08 REMARK 500 13 PRO A 12 -172.01 -62.04 REMARK 500 13 LEU A 72 31.19 -91.02 REMARK 500 13 ASP A 88 -157.96 -71.29 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: XFR39 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15847 RELATED DB: BMRB DBREF 2K5R A 1 89 UNP Q87A02 Q87A02_XYLFT 1 89 SEQADV 2K5R LEU A 90 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R GLU A 91 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 92 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 93 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 94 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 95 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 96 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 97 UNP Q87A02 EXPRESSION TAG SEQRES 1 A 97 MET ASP ARG LYS LEU LEU HIS LEU LEU CYS SER PRO ASP SEQRES 2 A 97 THR ARG GLN PRO LEU SER LEU LEU GLU SER LYS GLY LEU SEQRES 3 A 97 GLU ALA LEU ASN LYS ALA ILE VAL SER GLY THR VAL GLN SEQRES 4 A 97 ARG ALA ASP GLY SER ILE GLN ASN GLN SER LEU HIS GLU SEQRES 5 A 97 ALA LEU ILE THR ARG ASP ARG LYS GLN VAL PHE ARG ILE SEQRES 6 A 97 GLU ASP SER ILE PRO VAL LEU LEU PRO GLU GLU ALA ILE SEQRES 7 A 97 ALA THR ILE GLN ILE ALA ASN PHE PRO ASP LYS LEU GLU SEQRES 8 A 97 HIS HIS HIS HIS HIS HIS HELIX 1 1 GLU A 22 GLY A 36 1 15 HELIX 2 2 LEU A 73 GLU A 75 5 3 HELIX 3 3 ILE A 81 ILE A 83 5 3 SHEET 1 A 4 SER A 19 LEU A 20 0 SHEET 2 A 4 GLU A 52 ILE A 55 -1 O ILE A 55 N SER A 19 SHEET 3 A 4 GLN A 61 GLU A 66 -1 O PHE A 63 N LEU A 54 SHEET 4 A 4 ILE A 69 VAL A 71 -1 O ILE A 69 N GLU A 66 SHEET 1 B 4 SER A 19 LEU A 20 0 SHEET 2 B 4 GLU A 52 ILE A 55 -1 O ILE A 55 N SER A 19 SHEET 3 B 4 GLN A 61 GLU A 66 -1 O PHE A 63 N LEU A 54 SHEET 4 B 4 ALA A 77 ALA A 79 -1 O ILE A 78 N VAL A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1