data_2K5U # _entry.id 2K5U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2K5U pdb_00002k5u 10.2210/pdb2k5u/pdb RCSB RCSB100713 ? ? WWPDB D_1000100713 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.db_id 15809 _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2K5U _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-30 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Prestegard, J.' 1 'Liu, Y.' 2 # _citation.id primary _citation.title 'Structure and Membrane Interaction of Myristoylated ARF1' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 79 _citation.page_last 87 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19141284 _citation.pdbx_database_id_DOI 10.1016/j.str.2008.10.020 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, Y.' 1 ? primary 'Kahn, R.A.' 2 ? primary 'Prestegard, J.H.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ADP-ribosylation factor 1' 20631.598 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MYR)GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRS LWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQ ATCATSGEGLYEGLEWLSNSLKNST ; _entity_poly.pdbx_seq_one_letter_code_can ;XGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH YYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCA TSGEGLYEGLEWLSNSLKNST ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MYR n 1 2 GLY n 1 3 LEU n 1 4 PHE n 1 5 ALA n 1 6 SER n 1 7 LYS n 1 8 LEU n 1 9 PHE n 1 10 SER n 1 11 ASN n 1 12 LEU n 1 13 PHE n 1 14 GLY n 1 15 ASN n 1 16 LYS n 1 17 GLU n 1 18 MET n 1 19 ARG n 1 20 ILE n 1 21 LEU n 1 22 MET n 1 23 VAL n 1 24 GLY n 1 25 LEU n 1 26 ASP n 1 27 GLY n 1 28 ALA n 1 29 GLY n 1 30 LYS n 1 31 THR n 1 32 THR n 1 33 VAL n 1 34 LEU n 1 35 TYR n 1 36 LYS n 1 37 LEU n 1 38 LYS n 1 39 LEU n 1 40 GLY n 1 41 GLU n 1 42 VAL n 1 43 ILE n 1 44 THR n 1 45 THR n 1 46 ILE n 1 47 PRO n 1 48 THR n 1 49 ILE n 1 50 GLY n 1 51 PHE n 1 52 ASN n 1 53 VAL n 1 54 GLU n 1 55 THR n 1 56 VAL n 1 57 GLN n 1 58 TYR n 1 59 LYS n 1 60 ASN n 1 61 ILE n 1 62 SER n 1 63 PHE n 1 64 THR n 1 65 VAL n 1 66 TRP n 1 67 ASP n 1 68 VAL n 1 69 GLY n 1 70 GLY n 1 71 GLN n 1 72 ASP n 1 73 ARG n 1 74 ILE n 1 75 ARG n 1 76 SER n 1 77 LEU n 1 78 TRP n 1 79 ARG n 1 80 HIS n 1 81 TYR n 1 82 TYR n 1 83 ARG n 1 84 ASN n 1 85 THR n 1 86 GLU n 1 87 GLY n 1 88 VAL n 1 89 ILE n 1 90 PHE n 1 91 VAL n 1 92 VAL n 1 93 ASP n 1 94 SER n 1 95 ASN n 1 96 ASP n 1 97 ARG n 1 98 SER n 1 99 ARG n 1 100 ILE n 1 101 GLY n 1 102 GLU n 1 103 ALA n 1 104 ARG n 1 105 GLU n 1 106 VAL n 1 107 MET n 1 108 GLN n 1 109 ARG n 1 110 MET n 1 111 LEU n 1 112 ASN n 1 113 GLU n 1 114 ASP n 1 115 GLU n 1 116 LEU n 1 117 ARG n 1 118 ASN n 1 119 ALA n 1 120 ALA n 1 121 TRP n 1 122 LEU n 1 123 VAL n 1 124 PHE n 1 125 ALA n 1 126 ASN n 1 127 LYS n 1 128 GLN n 1 129 ASP n 1 130 LEU n 1 131 PRO n 1 132 GLU n 1 133 ALA n 1 134 MET n 1 135 SER n 1 136 ALA n 1 137 ALA n 1 138 GLU n 1 139 ILE n 1 140 THR n 1 141 GLU n 1 142 LYS n 1 143 LEU n 1 144 GLY n 1 145 LEU n 1 146 HIS n 1 147 SER n 1 148 ILE n 1 149 ARG n 1 150 ASN n 1 151 ARG n 1 152 PRO n 1 153 TRP n 1 154 PHE n 1 155 ILE n 1 156 GLN n 1 157 ALA n 1 158 THR n 1 159 CYS n 1 160 ALA n 1 161 THR n 1 162 SER n 1 163 GLY n 1 164 GLU n 1 165 GLY n 1 166 LEU n 1 167 TYR n 1 168 GLU n 1 169 GLY n 1 170 LEU n 1 171 GLU n 1 172 TRP n 1 173 LEU n 1 174 SER n 1 175 ASN n 1 176 SER n 1 177 LEU n 1 178 LYS n 1 179 ASN n 1 180 SER n 1 181 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name rat _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ARF1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'pET20(b)' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ARF1_YEAST _struct_ref.pdbx_db_accession P11076 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHY YRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCAT SGEGLYEGLEWLSNSLKNST ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2K5U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 181 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P11076 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 181 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2K5U _struct_ref_seq_dif.mon_id MYR _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P11076 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details insertion _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MYR non-polymer . 'MYRISTIC ACID' ? 'C14 H28 O2' 228.371 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '3D CBCA(CO)NH' 1 2 2 '3D HNCA' 1 3 1 '3D HNCO' 1 4 1 '3D HNCACB' 1 5 1 '3D HN(CO)CA' 1 6 1 '3D HN(COCA)CB' 1 7 1 '3D 1H-15N NOESY' 1 8 3 '3D 1H-13C NOESY' 1 9 3 '3D 13C-filtered-NOESY-13C-edited NOESY' 1 10 3 '3D doubly-enhanced 13C exicted C-CmHm-TOCSY' 1 11 1 '2D HSQC-TROSY' 1 12 1 '2D HSQC-TROSY' 1 13 1 '3D HNCO-JNCO' 1 14 1 '3D HNCO-JNCO' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.8 mM [U-13C; U-15N; U-2H] myr-yARF1.GDP, 95% H2O/5% D2O' 1 '95% H2O/5% D2O' '0.8 mM [U-98% 13C; U-98% 15N] myr-yARF1.GDP, 95% H2O/5% D2O' 2 '95% H2O/5% D2O' '0.8 mM [U-100% 13C; U-100% 15N; 80% 2H] myr-yARF1.GDP, 95% H2O/5% D2O' 3 '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 800 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2K5U _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 16 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2K5U _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2K5U _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Varian collection VNMR ? 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 2 Goddard 'chemical shift assignment' Sparky ? 3 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS ? 4 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS ? 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2K5U _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2K5U _struct.title 'Solution structure of myirstoylated yeast ARF1 protein, GDP-bound' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2K5U _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;ARF, ARF1, myristoyl, myrsitoylated, GDP, ER-Golgi transport, Golgi apparatus, GTP-binding, Lipoprotein, Myristate, Nucleotide-binding, Protein transport, Transport, SIGNALING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 29 ? LYS A 38 ? GLY A 29 LYS A 38 1 ? 10 HELX_P HELX_P2 2 SER A 76 ? THR A 85 ? SER A 76 THR A 85 1 ? 10 HELX_P HELX_P3 3 ASP A 96 ? SER A 98 ? ASP A 96 SER A 98 5 ? 3 HELX_P HELX_P4 4 ARG A 99 ? ASN A 112 ? ARG A 99 ASN A 112 1 ? 14 HELX_P HELX_P5 5 GLU A 113 ? ARG A 117 ? GLU A 113 ARG A 117 5 ? 5 HELX_P HELX_P6 6 SER A 135 ? LEU A 143 ? SER A 135 LEU A 143 1 ? 9 HELX_P HELX_P7 7 GLY A 144 ? ILE A 148 ? GLY A 144 ILE A 148 5 ? 5 HELX_P HELX_P8 8 GLY A 165 ? ASN A 179 ? GLY A 165 ASN A 179 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id MYR _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id C1 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id MYR _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 43 ? THR A 45 ? ILE A 43 THR A 45 A 2 VAL A 53 ? TYR A 58 ? VAL A 53 TYR A 58 A 3 ILE A 61 ? VAL A 65 ? ILE A 61 VAL A 65 A 4 ARG A 19 ? VAL A 23 ? ARG A 19 VAL A 23 A 5 GLY A 87 ? ASP A 93 ? GLY A 87 ASP A 93 A 6 ALA A 120 ? ASN A 126 ? ALA A 120 ASN A 126 A 7 TRP A 153 ? THR A 158 ? TRP A 153 THR A 158 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 45 ? N THR A 45 O VAL A 53 ? O VAL A 53 A 2 3 N VAL A 56 ? N VAL A 56 O PHE A 63 ? O PHE A 63 A 3 4 O THR A 64 ? O THR A 64 N MET A 22 ? N MET A 22 A 4 5 N ARG A 19 ? N ARG A 19 O GLY A 87 ? O GLY A 87 A 5 6 N PHE A 90 ? N PHE A 90 O LEU A 122 ? O LEU A 122 A 6 7 N VAL A 123 ? N VAL A 123 O PHE A 154 ? O PHE A 154 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MYR 1 ? 4 'BINDING SITE FOR RESIDUE MYR A 1' AC2 Software A GDP 182 ? 14 'BINDING SITE FOR RESIDUE GDP A 182' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLY A 2 ? GLY A 2 . ? 1_555 ? 2 AC1 4 LYS A 36 ? LYS A 36 . ? 1_555 ? 3 AC1 4 LEU A 37 ? LEU A 37 . ? 1_555 ? 4 AC1 4 LYS A 38 ? LYS A 38 . ? 1_555 ? 5 AC2 14 LEU A 25 ? LEU A 25 . ? 1_555 ? 6 AC2 14 ASP A 26 ? ASP A 26 . ? 1_555 ? 7 AC2 14 GLY A 27 ? GLY A 27 . ? 1_555 ? 8 AC2 14 ALA A 28 ? ALA A 28 . ? 1_555 ? 9 AC2 14 GLY A 29 ? GLY A 29 . ? 1_555 ? 10 AC2 14 LYS A 30 ? LYS A 30 . ? 1_555 ? 11 AC2 14 THR A 31 ? THR A 31 . ? 1_555 ? 12 AC2 14 ASN A 95 ? ASN A 95 . ? 1_555 ? 13 AC2 14 ASN A 126 ? ASN A 126 . ? 1_555 ? 14 AC2 14 LYS A 127 ? LYS A 127 . ? 1_555 ? 15 AC2 14 GLN A 128 ? GLN A 128 . ? 1_555 ? 16 AC2 14 ASP A 129 ? ASP A 129 . ? 1_555 ? 17 AC2 14 LEU A 130 ? LEU A 130 . ? 1_555 ? 18 AC2 14 ALA A 160 ? ALA A 160 . ? 1_555 ? # _atom_sites.entry_id 2K5U _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MYR 1 1 1 MYR MYR A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 MET 18 18 18 MET MET A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 MET 22 22 22 MET MET A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 TRP 66 66 66 TRP TRP A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 MET 110 110 110 MET MET A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 TRP 121 121 121 TRP TRP A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 PHE 124 124 124 PHE PHE A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 MET 134 134 134 MET MET A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 THR 140 140 140 THR THR A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 ARG 151 151 151 ARG ARG A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 TRP 153 153 153 TRP TRP A . n A 1 154 PHE 154 154 154 PHE PHE A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 GLN 156 156 156 GLN GLN A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 CYS 159 159 159 CYS CYS A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 TYR 167 167 167 TYR TYR A . n A 1 168 GLU 168 168 168 GLU GLU A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 TRP 172 172 172 TRP TRP A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 SER 174 174 174 SER SER A . n A 1 175 ASN 175 175 175 ASN ASN A . n A 1 176 SER 176 176 176 SER SER A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 LYS 178 178 178 LYS LYS A . n A 1 179 ASN 179 179 179 ASN ASN A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 THR 181 181 181 THR THR A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id GDP _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 182 _pdbx_nonpoly_scheme.auth_seq_num 182 _pdbx_nonpoly_scheme.pdb_mon_id GDP _pdbx_nonpoly_scheme.auth_mon_id GDP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_ref_seq_dif.details' 6 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id myr-yARF1.GDP 0.8 mM '[U-13C; U-15N; U-2H]' 1 myr-yARF1.GDP 0.8 mM '[U-98% 13C; U-98% 15N]' 2 myr-yARF1.GDP 0.8 mM '[U-100% 13C; U-100% 15N; 80% 2H]' 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 HG1 A THR 31 ? ? O2B A GDP 182 ? ? 1.45 2 10 H A LYS 30 ? ? O1B A GDP 182 ? ? 1.58 3 13 HG1 A THR 31 ? ? O2B A GDP 182 ? ? 1.48 4 13 H A GLY 29 ? ? O1B A GDP 182 ? ? 1.55 5 14 H A THR 31 ? ? O2B A GDP 182 ? ? 1.53 6 15 HG1 A THR 31 ? ? O2B A GDP 182 ? ? 1.43 7 16 H A THR 31 ? ? O2B A GDP 182 ? ? 1.56 8 16 O A ALA 136 ? ? HG1 A THR 140 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 3 ? ? -102.57 -76.25 2 1 PHE A 4 ? ? 59.21 93.10 3 1 SER A 6 ? ? 62.26 -82.44 4 1 LYS A 7 ? ? 62.09 -80.58 5 1 ASN A 15 ? ? -168.67 33.69 6 1 GLU A 17 ? ? 62.63 111.31 7 1 LYS A 38 ? ? 83.87 -35.19 8 1 LEU A 39 ? ? 79.27 81.54 9 1 ILE A 49 ? ? 38.94 -108.29 10 1 LYS A 59 ? ? 58.30 -84.12 11 1 TRP A 66 ? ? -174.35 143.31 12 1 ARG A 75 ? ? -155.27 -149.99 13 1 ASP A 96 ? ? -114.36 65.69 14 1 LYS A 127 ? ? 132.66 32.33 15 1 ARG A 149 ? ? -44.36 154.28 16 1 ARG A 151 ? ? 123.92 -46.35 17 2 PHE A 4 ? ? 60.57 97.18 18 2 SER A 6 ? ? 60.70 102.90 19 2 LYS A 7 ? ? 59.88 159.66 20 2 PHE A 9 ? ? -145.69 -78.39 21 2 ASN A 11 ? ? -151.66 20.55 22 2 LEU A 12 ? ? 64.03 135.31 23 2 PHE A 13 ? ? -132.95 -155.21 24 2 GLU A 17 ? ? 50.80 90.54 25 2 LYS A 38 ? ? 78.08 -54.06 26 2 LEU A 39 ? ? 85.65 86.43 27 2 ILE A 49 ? ? -12.24 -49.49 28 2 ARG A 75 ? ? 173.57 47.49 29 2 SER A 76 ? ? -177.89 -96.57 30 2 ASP A 96 ? ? -114.26 67.94 31 2 LYS A 127 ? ? 132.71 33.65 32 2 ARG A 151 ? ? 123.15 -45.45 33 2 ASN A 179 ? ? -112.94 65.69 34 3 PHE A 9 ? ? 61.39 108.58 35 3 ASN A 11 ? ? -142.06 -53.79 36 3 PHE A 13 ? ? -179.67 39.46 37 3 LYS A 16 ? ? 47.14 92.95 38 3 GLU A 17 ? ? 58.49 108.05 39 3 LYS A 38 ? ? 86.00 -48.72 40 3 LEU A 39 ? ? 74.13 79.18 41 3 ILE A 49 ? ? 39.03 -110.32 42 3 LYS A 59 ? ? 43.29 -93.25 43 3 TRP A 66 ? ? -171.11 141.06 44 3 ASP A 72 ? ? 61.23 154.38 45 3 TYR A 82 ? ? -55.85 -71.10 46 3 ASP A 96 ? ? -112.03 66.54 47 3 LYS A 127 ? ? 132.22 34.73 48 3 ARG A 149 ? ? -45.36 166.07 49 3 ARG A 151 ? ? 118.73 -42.56 50 3 LYS A 178 ? ? -85.65 -79.90 51 3 ASN A 179 ? ? -121.08 -68.55 52 4 SER A 6 ? ? 58.81 -177.96 53 4 LYS A 7 ? ? -150.10 35.65 54 4 PHE A 9 ? ? -99.70 37.00 55 4 LEU A 12 ? ? 44.54 20.20 56 4 PHE A 13 ? ? 31.44 39.93 57 4 GLU A 17 ? ? 57.63 110.14 58 4 LYS A 38 ? ? 59.46 -83.46 59 4 LEU A 39 ? ? 71.82 -11.38 60 4 ILE A 46 ? ? -105.52 76.22 61 4 ILE A 61 ? ? -177.82 117.94 62 4 ASP A 67 ? ? -53.63 -176.88 63 4 GLN A 71 ? ? -146.85 19.97 64 4 ARG A 73 ? ? -177.27 -42.88 65 4 ARG A 75 ? ? -172.54 136.84 66 4 LYS A 127 ? ? 134.56 31.05 67 4 ASN A 150 ? ? 151.09 19.59 68 4 ARG A 151 ? ? 38.43 53.53 69 4 ASN A 179 ? ? -104.80 72.18 70 5 LEU A 3 ? ? 61.11 174.62 71 5 ALA A 5 ? ? -170.02 -56.78 72 5 LYS A 7 ? ? 63.77 133.38 73 5 SER A 10 ? ? 174.25 99.00 74 5 ASN A 11 ? ? -148.91 20.85 75 5 PHE A 13 ? ? -143.24 -53.35 76 5 ASN A 15 ? ? -141.92 -112.60 77 5 ALA A 28 ? ? -61.16 -100.79 78 5 LYS A 38 ? ? 62.60 88.81 79 5 ILE A 49 ? ? 38.80 -110.93 80 5 LYS A 59 ? ? 35.39 87.08 81 5 ASN A 60 ? ? 72.85 -54.82 82 5 VAL A 68 ? ? 33.31 77.98 83 5 GLN A 71 ? ? -160.63 24.56 84 5 SER A 76 ? ? 73.28 -65.11 85 5 TYR A 82 ? ? -56.32 -70.46 86 5 LYS A 127 ? ? 131.13 35.10 87 5 ARG A 149 ? ? -44.39 109.13 88 5 ARG A 151 ? ? 127.86 -47.23 89 5 LYS A 178 ? ? -88.34 -70.36 90 5 ASN A 179 ? ? 63.87 -77.58 91 5 SER A 180 ? ? 62.61 -80.91 92 6 LEU A 3 ? ? 61.70 116.77 93 6 ALA A 5 ? ? 59.80 179.36 94 6 LYS A 7 ? ? 61.20 93.54 95 6 PHE A 9 ? ? 62.41 125.84 96 6 SER A 10 ? ? -165.20 93.03 97 6 ASN A 11 ? ? -156.79 39.93 98 6 LEU A 12 ? ? 47.20 93.56 99 6 ASN A 15 ? ? -111.58 71.94 100 6 GLU A 17 ? ? 61.78 110.34 101 6 LYS A 38 ? ? 59.27 -81.96 102 6 LEU A 39 ? ? 68.16 -0.40 103 6 ILE A 49 ? ? 37.88 -106.17 104 6 ASN A 60 ? ? 79.89 -43.29 105 6 VAL A 68 ? ? 20.32 74.04 106 6 GLN A 71 ? ? -163.35 24.63 107 6 ARG A 73 ? ? 70.20 98.86 108 6 ARG A 75 ? ? -153.94 -72.34 109 6 SER A 76 ? ? -130.15 -68.05 110 6 TYR A 82 ? ? -55.87 -72.03 111 6 LYS A 127 ? ? 134.28 31.87 112 6 ARG A 149 ? ? -44.40 109.43 113 6 ARG A 151 ? ? 140.58 -54.03 114 6 ASN A 179 ? ? -100.49 -85.09 115 6 SER A 180 ? ? 167.65 -179.75 116 7 LEU A 3 ? ? 62.03 102.72 117 7 ALA A 5 ? ? -168.92 -67.50 118 7 SER A 6 ? ? -173.70 100.46 119 7 LEU A 8 ? ? -155.71 32.42 120 7 ASN A 11 ? ? -158.99 -66.45 121 7 ASN A 15 ? ? -149.20 -84.06 122 7 LYS A 16 ? ? -85.79 49.90 123 7 GLU A 17 ? ? 64.68 116.30 124 7 LYS A 38 ? ? 159.59 -68.20 125 7 LEU A 39 ? ? 73.82 61.45 126 7 LYS A 59 ? ? 35.39 84.44 127 7 ASN A 60 ? ? 75.89 -55.38 128 7 ASP A 67 ? ? -48.47 177.34 129 7 VAL A 68 ? ? -39.63 94.55 130 7 GLN A 71 ? ? -178.40 -29.35 131 7 ASP A 72 ? ? 55.45 168.52 132 7 ILE A 74 ? ? 72.29 143.10 133 7 SER A 76 ? ? -164.74 -61.33 134 7 TYR A 82 ? ? -56.22 -71.22 135 7 ASP A 96 ? ? -117.81 66.50 136 7 LYS A 127 ? ? 135.88 31.17 137 7 ARG A 149 ? ? -44.01 109.53 138 7 ARG A 151 ? ? 134.51 -51.23 139 7 ASN A 179 ? ? -95.37 -67.09 140 8 PHE A 4 ? ? -136.74 -55.97 141 8 LYS A 7 ? ? 63.09 128.14 142 8 LEU A 8 ? ? 60.79 -155.99 143 8 PHE A 9 ? ? -91.68 37.79 144 8 SER A 10 ? ? 59.59 111.03 145 8 PHE A 13 ? ? 63.36 -74.06 146 8 GLU A 17 ? ? 63.96 112.31 147 8 LYS A 38 ? ? 79.46 -68.34 148 8 ILE A 49 ? ? 38.01 -105.67 149 8 LYS A 59 ? ? 62.05 -81.27 150 8 GLN A 71 ? ? -176.20 -30.26 151 8 ASP A 72 ? ? -43.84 102.32 152 8 SER A 76 ? ? 174.93 -71.02 153 8 ASP A 96 ? ? -111.25 69.78 154 8 LYS A 127 ? ? 134.53 29.90 155 8 ARG A 151 ? ? 121.13 -43.61 156 8 ASN A 179 ? ? 65.08 -81.01 157 8 SER A 180 ? ? -178.92 -72.40 158 9 LEU A 3 ? ? -160.51 30.45 159 9 PHE A 4 ? ? -134.06 -61.10 160 9 SER A 6 ? ? -177.93 -39.62 161 9 LEU A 8 ? ? -127.52 -67.36 162 9 SER A 10 ? ? -174.59 134.97 163 9 ASN A 15 ? ? 61.34 61.55 164 9 LYS A 16 ? ? -142.89 49.65 165 9 LYS A 38 ? ? 53.79 81.91 166 9 ILE A 49 ? ? 38.29 -109.42 167 9 LYS A 59 ? ? 57.23 -86.12 168 9 GLN A 71 ? ? -168.16 -34.00 169 9 ASP A 72 ? ? 77.51 -53.71 170 9 ARG A 73 ? ? 79.42 -55.90 171 9 SER A 76 ? ? -179.14 -67.58 172 9 ASP A 96 ? ? -116.82 68.56 173 9 LYS A 127 ? ? 138.90 31.39 174 9 ARG A 151 ? ? 120.27 -43.02 175 9 ASN A 179 ? ? -99.82 39.87 176 9 SER A 180 ? ? -178.34 -70.87 177 10 SER A 6 ? ? -178.18 -39.43 178 10 LYS A 7 ? ? -170.92 102.38 179 10 LEU A 8 ? ? -88.10 -81.43 180 10 PHE A 9 ? ? 60.09 -75.74 181 10 SER A 10 ? ? -174.94 106.74 182 10 LEU A 12 ? ? 47.03 94.21 183 10 GLU A 17 ? ? 54.53 106.13 184 10 LYS A 38 ? ? 58.62 -83.39 185 10 LEU A 39 ? ? 71.60 -6.24 186 10 ILE A 49 ? ? 37.07 -108.63 187 10 ASN A 60 ? ? -152.88 37.87 188 10 ILE A 61 ? ? 178.76 140.89 189 10 TRP A 66 ? ? -171.63 134.33 190 10 ARG A 75 ? ? -131.25 -62.65 191 10 SER A 76 ? ? -179.72 -35.56 192 10 ASP A 96 ? ? -117.11 65.50 193 10 LYS A 127 ? ? 135.64 32.89 194 10 ARG A 149 ? ? -44.17 109.44 195 10 ARG A 151 ? ? 139.38 -52.70 196 10 LYS A 178 ? ? -87.92 -74.61 197 10 ASN A 179 ? ? 65.76 -75.14 198 10 SER A 180 ? ? -173.73 -76.25 199 11 ALA A 5 ? ? 60.12 -177.04 200 11 SER A 6 ? ? 64.32 -78.76 201 11 LEU A 8 ? ? -170.06 34.64 202 11 LEU A 12 ? ? 62.75 157.17 203 11 ASN A 15 ? ? -58.96 87.42 204 11 LYS A 38 ? ? 61.30 -84.95 205 11 LEU A 39 ? ? 80.64 -31.04 206 11 ILE A 49 ? ? 37.23 -105.32 207 11 LYS A 59 ? ? 64.53 -71.26 208 11 ASN A 60 ? ? -147.08 -31.16 209 11 TRP A 66 ? ? -172.05 147.46 210 11 ASP A 67 ? ? -59.20 172.63 211 11 ARG A 73 ? ? -166.29 -59.92 212 11 ARG A 75 ? ? 176.10 175.05 213 11 ASP A 96 ? ? -112.32 65.90 214 11 LYS A 127 ? ? 129.88 34.17 215 11 ARG A 149 ? ? -44.56 109.14 216 11 ARG A 151 ? ? 132.16 -48.91 217 11 ASN A 179 ? ? -97.64 -68.40 218 11 SER A 180 ? ? 179.00 -168.78 219 12 ALA A 5 ? ? -138.38 -60.19 220 12 SER A 6 ? ? -163.42 -55.57 221 12 SER A 10 ? ? -61.91 96.88 222 12 LEU A 12 ? ? -28.15 95.32 223 12 ASN A 15 ? ? 92.03 -11.05 224 12 GLU A 17 ? ? -48.08 158.56 225 12 LYS A 38 ? ? 61.25 -82.85 226 12 LEU A 39 ? ? 72.15 -11.55 227 12 ILE A 49 ? ? -23.19 -41.51 228 12 LYS A 59 ? ? 58.23 -85.44 229 12 VAL A 68 ? ? 29.54 83.59 230 12 GLN A 71 ? ? -155.38 27.23 231 12 ARG A 73 ? ? 177.11 103.97 232 12 ILE A 74 ? ? -137.35 -42.76 233 12 ARG A 75 ? ? 178.94 -76.60 234 12 SER A 76 ? ? -147.49 10.59 235 12 TYR A 82 ? ? -56.32 -70.59 236 12 ASP A 96 ? ? -118.94 69.51 237 12 LYS A 127 ? ? 135.84 32.32 238 12 ARG A 149 ? ? -45.04 153.05 239 12 ARG A 151 ? ? 119.02 -43.48 240 12 ASN A 179 ? ? 64.10 126.04 241 12 SER A 180 ? ? -140.21 -69.05 242 13 LEU A 3 ? ? -97.81 -72.09 243 13 PHE A 4 ? ? 65.68 -69.90 244 13 LEU A 12 ? ? 157.88 -174.55 245 13 PHE A 13 ? ? -148.39 33.29 246 13 ASN A 15 ? ? 66.83 96.87 247 13 GLU A 17 ? ? 56.33 102.28 248 13 LYS A 38 ? ? 63.94 -79.29 249 13 LEU A 39 ? ? 66.97 74.33 250 13 ILE A 49 ? ? 37.27 -98.96 251 13 LYS A 59 ? ? 32.27 79.50 252 13 ASN A 60 ? ? 76.50 -56.16 253 13 TRP A 66 ? ? -178.06 149.40 254 13 VAL A 68 ? ? 31.73 68.73 255 13 GLN A 71 ? ? 173.21 26.67 256 13 ASP A 72 ? ? -61.75 99.99 257 13 ILE A 74 ? ? -148.92 -40.61 258 13 ARG A 75 ? ? -169.03 -160.78 259 13 ASP A 96 ? ? -116.51 68.01 260 13 LYS A 127 ? ? 136.97 32.46 261 13 ARG A 151 ? ? 122.07 -48.81 262 13 LYS A 178 ? ? -88.36 -72.66 263 13 ASN A 179 ? ? -176.91 138.36 264 13 SER A 180 ? ? 61.26 -174.48 265 14 PHE A 4 ? ? -59.20 -71.16 266 14 SER A 10 ? ? -141.50 -41.07 267 14 PHE A 13 ? ? -150.00 -109.17 268 14 ASN A 15 ? ? -177.52 27.26 269 14 GLU A 17 ? ? 61.91 108.04 270 14 LYS A 38 ? ? 65.55 -83.91 271 14 LEU A 39 ? ? 70.31 -16.36 272 14 ILE A 49 ? ? -28.15 -37.79 273 14 LYS A 59 ? ? 64.82 -71.01 274 14 ASN A 60 ? ? -141.42 -34.46 275 14 ASP A 67 ? ? -53.12 174.67 276 14 VAL A 68 ? ? -46.84 98.74 277 14 GLN A 71 ? ? -147.90 -37.37 278 14 ASP A 72 ? ? 58.82 -174.67 279 14 ASP A 96 ? ? -118.75 66.57 280 14 LYS A 127 ? ? 132.86 33.48 281 14 ARG A 151 ? ? 126.76 -35.81 282 15 PHE A 4 ? ? -171.23 -42.24 283 15 LEU A 8 ? ? -127.05 -65.65 284 15 PHE A 9 ? ? -131.14 -49.01 285 15 ASN A 11 ? ? -177.47 -39.59 286 15 LEU A 12 ? ? 87.08 88.99 287 15 ASN A 15 ? ? -176.94 44.12 288 15 GLU A 17 ? ? 62.53 110.73 289 15 LYS A 38 ? ? 69.65 -79.07 290 15 ILE A 46 ? ? -119.95 73.84 291 15 LYS A 59 ? ? -41.13 -70.24 292 15 TRP A 66 ? ? -175.25 145.01 293 15 ASP A 67 ? ? -59.68 -178.05 294 15 VAL A 68 ? ? -44.71 90.69 295 15 ARG A 73 ? ? -126.37 -74.42 296 15 SER A 76 ? ? -177.47 -71.75 297 15 LYS A 127 ? ? 137.37 30.43 298 15 ARG A 149 ? ? -44.37 109.23 299 15 ARG A 151 ? ? 140.66 -53.78 300 16 LEU A 3 ? ? 60.10 96.38 301 16 ALA A 5 ? ? 60.77 103.51 302 16 SER A 6 ? ? -162.64 -53.59 303 16 PHE A 9 ? ? 59.38 -177.64 304 16 LEU A 12 ? ? -41.75 96.89 305 16 LYS A 16 ? ? -36.41 88.84 306 16 GLU A 17 ? ? 60.91 150.26 307 16 LYS A 38 ? ? 42.53 -84.67 308 16 LEU A 39 ? ? 73.11 -14.73 309 16 ILE A 49 ? ? 36.87 -104.41 310 16 LYS A 59 ? ? 43.25 -91.33 311 16 ASP A 67 ? ? -58.24 173.01 312 16 GLN A 71 ? ? -174.97 -31.93 313 16 ASP A 72 ? ? 71.84 -172.11 314 16 SER A 76 ? ? 176.03 -48.35 315 16 ASP A 96 ? ? -117.45 65.95 316 16 LYS A 127 ? ? 132.41 31.71 317 16 ARG A 149 ? ? -45.45 166.18 318 16 ARG A 151 ? ? 122.50 -47.37 319 16 ASN A 179 ? ? 66.54 -81.40 320 16 SER A 180 ? ? -179.25 -77.46 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name "GUANOSINE-5'-DIPHOSPHATE" _pdbx_entity_nonpoly.comp_id GDP #