HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-JUN-08 2K5W TITLE SOLUTION NMR STRUCTURE OF PUTATIVE LIPOPROTEIN FROM BACILLUS CEREUS TITLE 2 ORDERED LOCUS BC_2438. NORTHEAST STRUCTURAL GENOMICS TARGET BCR103A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL CYTOSOLIC PROTEIN BCR103A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS ATCC 14579; SOURCE 3 ORGANISM_TAXID: 226900; SOURCE 4 GENE: BC_2438; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21-23C; SOURCE 9 OTHER_DETAILS: EXPRESSION MEDIA MJ9 100%N15 5%C13 AND MJ9 100%N15 SOURCE 10 100%C13 KEYWDS UNKNOWN FUNCTION, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.M.CONOVER,G.SWAPNA,P.ROSSI,D.WANG,H.JANJUA,L.OWENS,R.XIAO,J.LIU, AUTHOR 2 M.C.BARAN,T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 4 01-MAY-24 2K5W 1 REMARK REVDAT 3 19-FEB-20 2K5W 1 REMARK SEQADV REVDAT 2 24-FEB-09 2K5W 1 VERSN REVDAT 1 26-AUG-08 2K5W 0 JRNL AUTH K.M.CONOVER,G.SWAPNA,P.ROSSI,D.WANG,H.JANJUA,L.OWENS,R.XIAO, JRNL AUTH 2 J.LIU,M.C.BARAN,T.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF PUTATIVE LIPOPROTEIN FROM BACILLUS JRNL TITL 2 CEREUS ORDERED LOCUS BC_2438. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 TARGET BCR103A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, AUTOSTRUCTURE 2.2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), HUANG, REMARK 3 TEJERO, POWERS AND MONTELIONE (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MONOMER BY GEL FILTRATION REMARK 3 CHROMATOGRAPHY/LIGHT SCATTERING. STRUCTURE DETERMINED BY TRIPLE REMARK 3 RESONANCE NMR SPECTROSCOPY. NOESY ASSIGNMENTS BY CYANA2.1. 20 OF REMARK 3 100 STRUCTURES LOWEST TARGET FUNCTION SELECTED WITH CYANA2.1. REMARK 3 SELECTED MODELS ARE FURTHER REFINED USING CNS IN EXPLICIT WATER REMARK 3 SHELL (NILGES PROTOCOL WITH PARAM19). ASSIGNMENT STATS REMARK 3 (EXCLUDING C-TERM TAG): BACKBONE 85.1%, SIDECHAIN 78.2%, REMARK 3 AROMATIC (SC) 76.7%, VL METHYL STEREOSPECIFIC 100%, UNAMBIGUOS REMARK 3 SIDECHAIN NH2 100%. STRUCTURE BASED ON 1446 NOE, 137 DIHE. MAX REMARK 3 NOE VIOLATION: 0.36 A (1MODEL); MAX DIHE VIOLATION: 6.6 DEG. 16 REMARK 3 TOTAL CLOSE CONTACTS PER 20 MODELS. STRUCTURE QUALITY FACTOR REMARK 3 (PSVS 1.3): ORDERED RESIDUES RANGES: 9-11, 13-18,23-51, 67-75, REMARK 3 87-107 FOR [S(PHI)+S(PSI)] > 1.8. SECONDARY STRUCTURE - BETA REMARK 3 STRANDS: (13-17, 24-27, 30-33, 35-41, 46-51, 67-72, 87-93). RMSD REMARK 3 1.0 BACKBONE, 1.3 ALL HEAVY ATOMS. RAMA. DISTRIBUTION: 95.7/4.2/ REMARK 3 0.1/0.0. PROCHECK (PSI-PHI): -0.31/-0.90(RAW/Z), PROCHECK (ALL): REMARK 3 -0.16/-0.95 (RAW/Z), MOLPROBITY CLASH: 15.17/-1.08 (RAW/Z). RPF REMARK 3 SCORES ALL ASSIGNED RESIDUES (FIT OF NOESY PEAKLISTS TO REMARK 3 STRUCTURE): RECALL: 0.99, PRECISION: 0.90, F-MEASURE: 0.94 DP- REMARK 3 SCORE: 0.803. REMARK 4 REMARK 4 2K5W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000100715. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 BCR103A, 50 UM DSS, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 20 MM MES, REMARK 210 5 MM CALCIUM CHLORIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O; REMARK 210 1.37 MM [5% 13C; U-100% 15N] REMARK 210 BCR103A, 50 UM DSS, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 20 MM MES, REMARK 210 5 MM CALCIUM CHLORIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O; REMARK 210 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 BCR103A, 50 UM DSS, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 20 MM MES, REMARK 210 5 MM CALCIUM CHLORIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-13C NOESY ARO; 3D 1H-13C- REMARK 210 15N SIM NOESY; 3D HNCO; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 3D CCH- REMARK 210 TOCSY; 2D 1H-13C HSQC STEREO; REMARK 210 HETNOE; SLOW EXCH 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.4.0, TOPSPIN 2.1, REMARK 210 NMRPIPE, TALOS, SPARKY 3.113, REMARK 210 PSVS 1.3, PDBSTAT 5.1, MOLMOL REMARK 210 2K2, PROCHECK, MOLPROBITY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 4 33.44 -85.39 REMARK 500 1 SER A 5 35.17 -86.69 REMARK 500 1 GLU A 21 -74.81 -141.64 REMARK 500 1 ASP A 59 -158.76 -83.47 REMARK 500 1 HIS A 60 -42.61 76.57 REMARK 500 1 LYS A 61 -164.00 -72.21 REMARK 500 1 LEU A 62 76.63 66.01 REMARK 500 1 LYS A 64 72.78 -68.79 REMARK 500 1 TYR A 65 -27.09 164.08 REMARK 500 1 SER A 78 -70.36 -167.16 REMARK 500 2 ARG A 8 33.12 -86.94 REMARK 500 2 GLU A 21 -64.31 -146.84 REMARK 500 2 SER A 53 -169.56 81.18 REMARK 500 2 GLU A 57 94.59 65.52 REMARK 500 2 LEU A 62 93.63 -68.24 REMARK 500 2 GLU A 81 84.62 -67.73 REMARK 500 2 SER A 83 -153.77 -172.76 REMARK 500 2 SER A 84 19.18 59.88 REMARK 500 2 VAL A 87 90.31 57.40 REMARK 500 2 PRO A 99 170.49 -57.68 REMARK 500 2 ILE A 108 -2.14 64.65 REMARK 500 3 GLU A 21 -73.04 -81.43 REMARK 500 3 ASP A 28 16.40 59.05 REMARK 500 3 ASP A 41 -178.84 -67.32 REMARK 500 3 THR A 54 -93.40 -91.93 REMARK 500 3 HIS A 60 -7.88 78.06 REMARK 500 3 LEU A 62 55.37 76.80 REMARK 500 3 ASP A 76 -2.28 67.31 REMARK 500 3 ILE A 108 99.41 63.18 REMARK 500 3 LYS A 109 -63.98 -145.33 REMARK 500 4 GLU A 2 -167.32 -110.69 REMARK 500 4 ASP A 12 41.75 -86.51 REMARK 500 4 GLU A 21 98.56 -66.61 REMARK 500 4 ARG A 52 -83.12 -90.50 REMARK 500 4 SER A 53 -179.65 179.11 REMARK 500 4 LEU A 62 96.32 -58.42 REMARK 500 4 ASP A 76 -169.38 -128.00 REMARK 500 4 LYS A 79 -44.60 -152.41 REMARK 500 4 SER A 83 90.37 -59.57 REMARK 500 4 GLU A 86 84.67 -69.64 REMARK 500 5 ALA A 4 28.38 -77.79 REMARK 500 5 LYS A 19 80.48 -165.53 REMARK 500 5 HIS A 60 85.58 -68.91 REMARK 500 5 ASP A 76 71.72 46.20 REMARK 500 5 ILE A 108 -55.34 74.27 REMARK 500 5 LYS A 109 92.42 -69.57 REMARK 500 6 ASP A 12 42.07 -76.39 REMARK 500 6 GLU A 21 -87.16 -115.95 REMARK 500 6 SER A 53 101.52 -55.01 REMARK 500 6 THR A 54 95.19 -60.11 REMARK 500 REMARK 500 THIS ENTRY HAS 156 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BCR103A RELATED DB: TARGETDB REMARK 900 RELATED ID: 15850 RELATED DB: BMRB DBREF 2K5W A 2 109 UNP Q813L1 Q813L1_BACCR 22 129 SEQADV 2K5W MET A 1 UNP Q813L1 EXPRESSION TAG SEQADV 2K5W LEU A 110 UNP Q813L1 EXPRESSION TAG SEQADV 2K5W GLU A 111 UNP Q813L1 EXPRESSION TAG SEQADV 2K5W HIS A 112 UNP Q813L1 EXPRESSION TAG SEQADV 2K5W HIS A 113 UNP Q813L1 EXPRESSION TAG SEQADV 2K5W HIS A 114 UNP Q813L1 EXPRESSION TAG SEQADV 2K5W HIS A 115 UNP Q813L1 EXPRESSION TAG SEQADV 2K5W HIS A 116 UNP Q813L1 EXPRESSION TAG SEQADV 2K5W HIS A 117 UNP Q813L1 EXPRESSION TAG SEQRES 1 A 117 MET GLU ARG ALA SER LEU ASN ARG ILE GLY LYS ASP VAL SEQRES 2 A 117 TYR TYR MET GLN ILE LYS GLY GLU GLY THR ILE GLU LYS SEQRES 3 A 117 VAL ASP GLY ARG ASN LEU ARG ASN TYR THR LEU PRO ALA SEQRES 4 A 117 TYR ASP GLU ASP GLY VAL LYS LYS GLN ILE THR PHE ARG SEQRES 5 A 117 SER THR LYS LYS GLU ASN ASP HIS LYS LEU ASN LYS TYR SEQRES 6 A 117 ALA PHE LEU ARG LEU TYR VAL ASP GLN ASP ASP ASN SER SEQRES 7 A 117 LYS ASN GLU ILE SER SER ILE GLU VAL LYS SER TYR GLU SEQRES 8 A 117 GLU ILE GLN LYS ALA ASP LEU PRO GLU LYS VAL LYS ASP SEQRES 9 A 117 LYS PHE THR ILE LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 GLN A 94 LEU A 98 5 5 HELIX 2 2 PRO A 99 ILE A 108 1 10 SHEET 1 A 5 LYS A 46 PHE A 51 0 SHEET 2 A 5 TYR A 35 ASP A 41 -1 N ALA A 39 O LYS A 47 SHEET 3 A 5 VAL A 13 GLN A 17 -1 N TYR A 15 O TYR A 40 SHEET 4 A 5 PHE A 67 VAL A 72 -1 O LEU A 68 N MET A 16 SHEET 5 A 5 VAL A 87 ILE A 93 -1 O SER A 89 N TYR A 71 SHEET 1 B 2 ILE A 24 VAL A 27 0 SHEET 2 B 2 ARG A 30 ARG A 33 -1 O LEU A 32 N GLU A 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1