data_2K6B # _entry.id 2K6B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2K6B pdb_00002k6b 10.2210/pdb2k6b/pdb RCSB RCSB100730 ? ? WWPDB D_1000100730 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 1YYB _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Solution structure of 1-26 fragment of human programmed cell death 5 protein' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2K6B _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-07-07 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Feng, Y.' 1 'Yao, H.' 2 'Liu, D.' 3 'Wang, J.' 4 # _citation.id primary _citation.title 'Structure-function correlation of human programmed cell death 5 protein.' _citation.journal_abbrev Arch.Biochem.Biophys. _citation.journal_volume 486 _citation.page_first 141 _citation.page_last 149 _citation.year 2009 _citation.journal_id_ASTM ABBIA4 _citation.country US _citation.journal_id_ISSN 0003-9861 _citation.journal_id_CSD 0158 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19358820 _citation.pdbx_database_id_DOI 10.1016/j.abb.2009.03.018 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yao, H.' 1 ? primary 'Xu, L.' 2 ? primary 'Feng, Y.' 3 ? primary 'Liu, D.' 4 ? primary 'Chen, Y.' 5 ? primary 'Wang, J.' 6 ? # _cell.entry_id 2K6B _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2K6B _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Programmed cell death protein 5' _entity.formula_weight 12692.337 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 2-112' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TF-1 cell apoptosis-related protein 19, Protein TFAR19' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMAR YGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMAR YGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ALA n 1 4 ASP n 1 5 GLU n 1 6 GLU n 1 7 LEU n 1 8 GLU n 1 9 ALA n 1 10 LEU n 1 11 ARG n 1 12 ARG n 1 13 GLN n 1 14 ARG n 1 15 LEU n 1 16 ALA n 1 17 GLU n 1 18 LEU n 1 19 GLN n 1 20 ALA n 1 21 LYS n 1 22 HIS n 1 23 GLY n 1 24 ASP n 1 25 PRO n 1 26 GLY n 1 27 ASP n 1 28 ALA n 1 29 ALA n 1 30 GLN n 1 31 GLN n 1 32 GLU n 1 33 ALA n 1 34 LYS n 1 35 HIS n 1 36 ARG n 1 37 GLU n 1 38 ALA n 1 39 GLU n 1 40 MET n 1 41 ARG n 1 42 ASN n 1 43 SER n 1 44 ILE n 1 45 LEU n 1 46 ALA n 1 47 GLN n 1 48 VAL n 1 49 LEU n 1 50 ASP n 1 51 GLN n 1 52 SER n 1 53 ALA n 1 54 ARG n 1 55 ALA n 1 56 ARG n 1 57 LEU n 1 58 SER n 1 59 ASN n 1 60 LEU n 1 61 ALA n 1 62 LEU n 1 63 VAL n 1 64 LYS n 1 65 PRO n 1 66 GLU n 1 67 LYS n 1 68 THR n 1 69 LYS n 1 70 ALA n 1 71 VAL n 1 72 GLU n 1 73 ASN n 1 74 TYR n 1 75 LEU n 1 76 ILE n 1 77 GLN n 1 78 MET n 1 79 ALA n 1 80 ARG n 1 81 TYR n 1 82 GLY n 1 83 GLN n 1 84 LEU n 1 85 SER n 1 86 GLU n 1 87 LYS n 1 88 VAL n 1 89 SER n 1 90 GLU n 1 91 GLN n 1 92 GLY n 1 93 LEU n 1 94 ILE n 1 95 GLU n 1 96 ILE n 1 97 LEU n 1 98 LYS n 1 99 LYS n 1 100 VAL n 1 101 SER n 1 102 GLN n 1 103 GLN n 1 104 THR n 1 105 GLU n 1 106 LYS n 1 107 THR n 1 108 THR n 1 109 THR n 1 110 VAL n 1 111 LYS n 1 112 PHE n 1 113 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PDCD5, TFAR19' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET-3d-HR52 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDCD5_HUMAN _struct_ref.pdbx_db_accession O14737 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYG QLSEKVSEQGLIEILKKVSQQTEKTTTVKFN ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2K6B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O14737 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 112 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 112 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2K6B GLY A 1 ? UNP O14737 ? ? 'expression tag' 0 1 1 2K6B SER A 2 ? UNP O14737 ? ? 'expression tag' 1 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCACB' 1 5 1 '3D HNCA' 1 6 1 '3D HNCO' 1 7 1 '3D H(CCO)NH' 1 8 1 '3D 1H-15N TOCSY' 1 9 1 '3D 1H-15N NOESY' 1 10 2 '3D HCCH-TOCSY' 1 11 1 '3D HN(CA)CO' 1 12 2 '3D HCCH-COSY' 1 13 2 '3D 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 4.7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 308 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1.0-2.0 mM [U-13C; U-15N] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' '1.0-2.0 mM [U-13C] pdcd5, 100 mM [U-2H] acetic acid, 100 mM sodium chloride, 0.01 % DSS, 0.01 % sodium azide, 100% D2O' 2 '100% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DMX' # _pdbx_nmr_refine.entry_id 2K6B _pdbx_nmr_refine.method 'molecular dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2K6B _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2K6B _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection XwinNMR ? 1 'Accelrys Software Inc.' processing Felix ? 2 'Accelrys Software Inc.' 'data analysis' Felix ? 3 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS ? 4 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS ? 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2K6B _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2K6B _struct.title 'Solution structure of 1-112 fragment of human programmed cell death 5 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2K6B _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'PDCD5, apoptosis, Phosphoprotein' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? GLN A 19 ? SER A 1 GLN A 18 1 ? 18 HELX_P HELX_P2 2 ASP A 27 ? LEU A 49 ? ASP A 26 LEU A 48 1 ? 23 HELX_P HELX_P3 3 ASP A 50 ? LYS A 64 ? ASP A 49 LYS A 63 1 ? 15 HELX_P HELX_P4 4 LYS A 64 ? TYR A 81 ? LYS A 63 TYR A 80 1 ? 18 HELX_P HELX_P5 5 SER A 89 ? SER A 101 ? SER A 88 SER A 100 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2K6B _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 ALA 3 2 2 ALA ALA A . n A 1 4 ASP 4 3 3 ASP ASP A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 GLU 8 7 7 GLU GLU A . n A 1 9 ALA 9 8 8 ALA ALA A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 ARG 11 10 10 ARG ARG A . n A 1 12 ARG 12 11 11 ARG ARG A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 ARG 14 13 13 ARG ARG A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 GLN 19 18 18 GLN GLN A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 HIS 22 21 21 HIS HIS A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 ASP 24 23 23 ASP ASP A . n A 1 25 PRO 25 24 24 PRO PRO A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 ASP 27 26 26 ASP ASP A . n A 1 28 ALA 28 27 27 ALA ALA A . n A 1 29 ALA 29 28 28 ALA ALA A . n A 1 30 GLN 30 29 29 GLN GLN A . n A 1 31 GLN 31 30 30 GLN GLN A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 LYS 34 33 33 LYS LYS A . n A 1 35 HIS 35 34 34 HIS HIS A . n A 1 36 ARG 36 35 35 ARG ARG A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 MET 40 39 39 MET MET A . n A 1 41 ARG 41 40 40 ARG ARG A . n A 1 42 ASN 42 41 41 ASN ASN A . n A 1 43 SER 43 42 42 SER SER A . n A 1 44 ILE 44 43 43 ILE ILE A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 GLN 47 46 46 GLN GLN A . n A 1 48 VAL 48 47 47 VAL VAL A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 GLN 51 50 50 GLN GLN A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 ARG 54 53 53 ARG ARG A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 ARG 56 55 55 ARG ARG A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 ASN 59 58 58 ASN ASN A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 ALA 61 60 60 ALA ALA A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 VAL 63 62 62 VAL VAL A . n A 1 64 LYS 64 63 63 LYS LYS A . n A 1 65 PRO 65 64 64 PRO PRO A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 THR 68 67 67 THR THR A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 VAL 71 70 70 VAL VAL A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 ASN 73 72 72 ASN ASN A . n A 1 74 TYR 74 73 73 TYR TYR A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 ILE 76 75 75 ILE ILE A . n A 1 77 GLN 77 76 76 GLN GLN A . n A 1 78 MET 78 77 77 MET MET A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 TYR 81 80 80 TYR TYR A . n A 1 82 GLY 82 81 81 GLY GLY A . n A 1 83 GLN 83 82 82 GLN GLN A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 SER 85 84 84 SER SER A . n A 1 86 GLU 86 85 85 GLU GLU A . n A 1 87 LYS 87 86 86 LYS LYS A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 GLU 90 89 89 GLU GLU A . n A 1 91 GLN 91 90 90 GLN GLN A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 LYS 98 97 97 LYS LYS A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 GLN 102 101 101 GLN GLN A . n A 1 103 GLN 103 102 102 GLN GLN A . n A 1 104 THR 104 103 103 THR THR A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 LYS 106 105 105 LYS LYS A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 THR 108 107 107 THR THR A . n A 1 109 THR 109 108 108 THR THR A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 LYS 111 110 110 LYS LYS A . n A 1 112 PHE 112 111 111 PHE PHE A . n A 1 113 ASN 113 112 112 ASN ASN A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id pdcd5 1.0 mM '[U-13C; U-15N]' 1 'acetic acid' 100 mM '[U-2H]' 1 'sodium chloride' 100 mM ? 1 DSS 0.01 % ? 1 'sodium azide' 0.01 % ? 1 pdcd5 1.0 mM '[U-13C]' 2 'acetic acid' 100 mM '[U-2H]' 2 'sodium chloride' 100 mM ? 2 DSS 0.01 % ? 2 'sodium azide' 0.01 % ? 2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 4 HZ1 A LYS 110 ? ? OXT A ASN 112 ? ? 1.56 2 7 HH A TYR 73 ? ? OE2 A GLU 104 ? ? 1.58 3 13 H2 A GLY 0 ? ? OE2 A GLU 5 ? ? 1.59 4 15 HZ2 A LYS 98 ? ? OE2 A GLU 104 ? ? 1.58 5 15 HZ2 A LYS 33 ? ? OXT A ASN 112 ? ? 1.58 6 16 HZ2 A LYS 98 ? ? OE1 A GLU 104 ? ? 1.60 7 19 H2 A GLY 0 ? ? OE1 A GLU 4 ? ? 1.57 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 18 ? ? 64.64 89.24 2 1 ASP A 26 ? ? 48.78 -90.91 3 1 GLN A 101 ? ? -92.85 -71.77 4 1 GLN A 102 ? ? -177.15 104.73 5 1 THR A 103 ? ? -151.85 79.57 6 1 GLU A 104 ? ? -160.76 -10.05 7 2 ALA A 19 ? ? 169.44 120.45 8 2 HIS A 21 ? ? 168.87 -25.85 9 2 GLU A 85 ? ? 79.30 164.57 10 2 THR A 103 ? ? 65.24 73.49 11 3 GLN A 18 ? ? -157.53 -26.55 12 3 ALA A 19 ? ? 81.95 108.26 13 3 LYS A 63 ? ? -161.30 102.34 14 3 GLN A 102 ? ? -132.70 -91.24 15 3 THR A 103 ? ? -160.95 -56.02 16 3 LYS A 110 ? ? 61.33 70.68 17 4 GLN A 18 ? ? 58.67 77.54 18 4 ASP A 26 ? ? -104.09 -63.71 19 4 GLU A 85 ? ? -169.98 -168.58 20 4 GLN A 102 ? ? -150.06 -72.16 21 4 THR A 103 ? ? -177.05 -61.90 22 4 GLU A 104 ? ? 158.05 153.33 23 4 THR A 106 ? ? -53.92 99.69 24 4 THR A 108 ? ? 61.31 70.02 25 5 HIS A 21 ? ? 87.17 -1.55 26 5 GLN A 101 ? ? -82.45 -76.51 27 5 GLN A 102 ? ? -168.58 113.85 28 5 THR A 103 ? ? -163.96 -66.01 29 5 THR A 106 ? ? -155.40 24.51 30 5 THR A 107 ? ? 67.66 101.22 31 6 GLN A 18 ? ? 75.75 -60.15 32 6 HIS A 21 ? ? -168.62 23.24 33 6 GLN A 102 ? ? -146.61 -85.93 34 6 THR A 103 ? ? -152.91 -66.29 35 7 ALA A 19 ? ? 64.21 173.64 36 7 PRO A 24 ? ? -88.53 38.54 37 7 GLN A 101 ? ? -105.22 -70.15 38 7 GLN A 102 ? ? -179.71 131.28 39 7 THR A 103 ? ? -103.75 75.88 40 8 LYS A 63 ? ? -150.68 84.03 41 8 SER A 84 ? ? -100.75 -60.09 42 8 GLU A 85 ? ? -145.46 -157.75 43 8 GLN A 102 ? ? -135.55 -94.84 44 8 THR A 103 ? ? -174.49 -47.29 45 8 THR A 108 ? ? -164.04 -33.18 46 9 ALA A 2 ? ? -92.07 -62.34 47 9 SER A 84 ? ? -171.29 -40.31 48 9 GLN A 102 ? ? -161.76 -82.35 49 9 THR A 103 ? ? -147.84 -74.49 50 9 GLU A 104 ? ? -155.64 -48.43 51 9 LYS A 105 ? ? 76.80 67.58 52 10 SER A 1 ? ? -163.40 101.44 53 10 SER A 84 ? ? -150.60 27.92 54 10 GLN A 102 ? ? -143.84 -79.98 55 10 THR A 106 ? ? 92.31 137.01 56 11 GLN A 18 ? ? 72.10 -58.33 57 11 GLU A 85 ? ? 78.03 175.02 58 11 GLN A 102 ? ? -140.96 -75.39 59 11 THR A 103 ? ? -158.91 -56.53 60 11 VAL A 109 ? ? 67.53 88.14 61 11 LYS A 110 ? ? -167.35 -62.01 62 12 GLN A 18 ? ? 68.07 -51.40 63 12 HIS A 21 ? ? -143.57 12.99 64 12 GLN A 102 ? ? -130.01 -120.92 65 12 THR A 103 ? ? -162.58 -72.77 66 12 LYS A 105 ? ? 166.55 -55.34 67 13 GLN A 18 ? ? -176.97 -0.12 68 13 ALA A 19 ? ? 65.10 -168.75 69 13 ASP A 26 ? ? 72.23 -50.63 70 13 GLN A 101 ? ? -104.92 -72.63 71 13 GLN A 102 ? ? 174.15 144.66 72 13 THR A 103 ? ? -131.28 -91.21 73 13 LYS A 105 ? ? 175.92 140.39 74 13 PHE A 111 ? ? -100.89 55.64 75 14 LYS A 20 ? ? 47.52 -79.02 76 14 HIS A 21 ? ? -169.15 27.40 77 14 PRO A 24 ? ? -93.30 44.57 78 14 GLN A 102 ? ? -132.25 -85.27 79 14 THR A 103 ? ? -158.18 -46.29 80 14 LYS A 105 ? ? -117.79 -75.02 81 14 THR A 106 ? ? -176.88 -178.12 82 15 GLN A 18 ? ? 64.02 62.05 83 15 ASP A 26 ? ? 62.77 -71.26 84 15 SER A 84 ? ? -144.88 -40.02 85 15 GLN A 101 ? ? -90.70 -75.87 86 15 THR A 103 ? ? 68.46 97.30 87 15 LYS A 105 ? ? 62.76 79.41 88 15 THR A 107 ? ? -152.80 -29.03 89 15 THR A 108 ? ? 69.68 -80.37 90 16 GLN A 18 ? ? 80.79 -39.48 91 16 HIS A 21 ? ? 61.80 71.16 92 16 GLN A 101 ? ? -101.06 -66.35 93 16 GLN A 102 ? ? -125.93 -93.27 94 16 THR A 103 ? ? -163.13 -71.78 95 16 GLU A 104 ? ? 155.29 115.29 96 17 SER A 1 ? ? -88.13 35.37 97 17 ASP A 26 ? ? 72.54 -31.59 98 17 GLN A 101 ? ? -105.73 -74.86 99 17 GLU A 104 ? ? -176.28 123.82 100 17 LYS A 105 ? ? -144.04 -8.93 101 17 LYS A 110 ? ? 73.31 131.94 102 18 SER A 1 ? ? -113.32 78.99 103 18 HIS A 21 ? ? -152.67 65.49 104 18 THR A 103 ? ? 65.80 75.84 105 18 VAL A 109 ? ? 73.71 -70.32 106 18 PHE A 111 ? ? -71.29 -72.41 107 19 GLN A 18 ? ? 69.80 74.53 108 19 PRO A 24 ? ? -65.19 35.76 109 19 ASP A 26 ? ? 35.46 -80.34 110 19 GLN A 101 ? ? -76.65 -78.03 111 19 GLN A 102 ? ? -130.30 -59.05 112 19 THR A 103 ? ? -148.64 -60.59 113 19 GLU A 104 ? ? -179.03 -22.35 114 20 LYS A 63 ? ? -169.67 104.68 115 20 GLN A 102 ? ? -125.75 -92.26 116 20 THR A 103 ? ? 179.26 -63.03 117 20 GLU A 104 ? ? 174.68 88.60 118 20 VAL A 109 ? ? 75.29 94.14 119 20 LYS A 110 ? ? -140.38 -73.05 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 2 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 35 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.075 _pdbx_validate_planes.type 'SIDE CHAIN' #