HEADER UNKNOWN FUNCTION 11-JUL-08 2K6L TITLE THE SOLUTION STRUCTURE OF XACB0070 FROM XANTHONOMAS AXONOPODIS PV TITLE 2 CITRI REVEALS THIS NEW PROTEIN IS A MEMBER OF THE RHH FAMILY OF TITLE 3 TRANSCRIPTIONAL REPRESSORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: XACB0070 EXISTS AS A HOMODIMER IN SOLUTION. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 3 ORGANISM_TAXID: 92829; SOURCE 4 GENE: XACA0037, XACB0070; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: (DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-3A KEYWDS XANTHONOMAS AXONOPODIS, RHH, STRUCTURAL PROTEOMICS, PLASMID, KEYWDS 2 HYPOTHETICAL DNA BINDING PROTEIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.GALLO,D.O.CICERO,I.AMATA,T.ELISEO,M.PACI,A.SPISNI,E.FERRARI, AUTHOR 2 T.A.PERTINHEZ,C.S.FARAH REVDAT 3 29-MAY-24 2K6L 1 REMARK REVDAT 2 16-MAR-22 2K6L 1 REMARK REVDAT 1 16-JUN-09 2K6L 0 JRNL AUTH M.GALLO,E.FERRARI,I.AMATA,T.ELISEO,T.A.PERTINHEZ,M.PACI, JRNL AUTH 2 C.S.FARAH,A.SPISNI,D.O.CICERO JRNL TITL THE SOLUTION STRUCTURE REVEALS THAT XACB0070 FROM THE PLANT JRNL TITL 2 PATHOGEN XANTHOMONAS CITRI BELONGS TO THE RHH SUPERFAMILY OF JRNL TITL 3 BACTERIAL DNA-BINDING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, XPLOR-NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), REMARK 3 C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000100740. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313; 308.0 REMARK 210 PH : 6.7; 9.00 REMARK 210 IONIC STRENGTH : 170; 420 REMARK 210 PRESSURE : AMBIENT ATM; AMBIENT PA REMARK 210 SAMPLE CONTENTS : 40MM SODIUM PHOSPHATE, 50MM REMARK 210 SODIUM CHLORIDE, 0.05% SODIUM REMARK 210 AZIDE, 0.3MM XACB0070, 90% H2O/ REMARK 210 10% D2O; 40MM SODIUM PHOSPHATE, REMARK 210 300MM SODIUM CHLORIDE, 0.05% REMARK 210 SODIUM AZIDE, 0.5MM XACB0070, 90% REMARK 210 H2O/10% D2O; 40MM SODIUM REMARK 210 PHOSPHATE, 300MM SODIUM CHLORIDE, REMARK 210 0.05% SODIUM AZIDE, 0.5MM REMARK 210 XACB0070, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HBHA(CO)NH; HETNOE; T1; T2 REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 30 -70.43 -73.71 REMARK 500 1 ASP A 32 -161.23 -129.84 REMARK 500 1 LYS B 30 -70.57 -73.70 REMARK 500 1 ASP B 32 -161.38 -129.68 REMARK 500 2 PRO A 12 -15.12 -45.76 REMARK 500 2 ARG A 29 -142.04 -71.94 REMARK 500 2 LYS A 30 -160.48 -57.30 REMARK 500 2 ASP A 32 -86.57 -118.16 REMARK 500 2 PRO B 12 -15.32 -44.99 REMARK 500 2 ARG B 29 -142.00 -72.09 REMARK 500 2 LYS B 30 -160.43 -57.38 REMARK 500 2 ASP B 32 -86.82 -118.07 REMARK 500 3 LYS A 30 -92.71 -57.29 REMARK 500 3 ASP A 32 -138.94 -105.84 REMARK 500 3 LYS B 30 -92.55 -57.92 REMARK 500 3 ASP B 32 -138.87 -105.75 REMARK 500 4 PRO A 12 -12.91 -46.17 REMARK 500 4 ASP A 32 -110.41 -124.08 REMARK 500 4 PRO B 12 -12.82 -46.10 REMARK 500 4 ASP B 32 -110.36 -124.05 REMARK 500 5 PRO A 12 -7.87 -48.41 REMARK 500 5 LYS A 30 -109.55 -102.05 REMARK 500 5 ASP A 32 -161.80 -123.06 REMARK 500 5 PRO B 12 -7.69 -48.24 REMARK 500 5 LYS B 30 -109.38 -101.77 REMARK 500 5 ASP B 32 -161.80 -123.55 REMARK 500 6 PRO A 12 -4.34 -51.42 REMARK 500 6 ARG A 29 -97.60 -97.75 REMARK 500 6 PRO B 12 -4.40 -51.42 REMARK 500 6 ARG B 29 -97.72 -97.69 REMARK 500 7 PRO A 12 -5.87 -49.77 REMARK 500 7 LYS A 30 -100.33 -82.87 REMARK 500 7 ASP A 32 -85.23 -125.60 REMARK 500 7 PRO B 12 -6.02 -49.60 REMARK 500 7 LYS B 30 -100.38 -83.14 REMARK 500 7 ASP B 32 -85.52 -125.78 REMARK 500 9 PRO A 12 -5.85 -50.48 REMARK 500 9 ARG A 29 -123.91 -100.34 REMARK 500 9 PRO B 12 -5.89 -50.50 REMARK 500 9 ARG B 29 -123.71 -100.33 REMARK 500 9 LYS B 30 -169.98 -72.06 REMARK 500 10 PRO A 12 -13.56 -43.01 REMARK 500 10 ASP A 32 -107.36 -109.72 REMARK 500 10 PRO B 12 -13.79 -42.80 REMARK 500 10 ASP B 32 -107.55 -110.24 REMARK 500 11 PRO A 12 -12.20 -43.34 REMARK 500 11 ARG A 29 49.93 -72.46 REMARK 500 11 ASP A 32 -148.51 -58.75 REMARK 500 11 PRO B 12 -8.56 -53.20 REMARK 500 11 ARG B 29 -69.02 -130.20 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 5 0.28 SIDE CHAIN REMARK 500 1 ARG A 19 0.21 SIDE CHAIN REMARK 500 1 ARG A 29 0.18 SIDE CHAIN REMARK 500 1 ARG A 35 0.31 SIDE CHAIN REMARK 500 1 ARG A 42 0.09 SIDE CHAIN REMARK 500 1 ARG A 48 0.22 SIDE CHAIN REMARK 500 1 ARG B 5 0.28 SIDE CHAIN REMARK 500 1 ARG B 19 0.21 SIDE CHAIN REMARK 500 1 ARG B 29 0.18 SIDE CHAIN REMARK 500 1 ARG B 35 0.31 SIDE CHAIN REMARK 500 1 ARG B 42 0.10 SIDE CHAIN REMARK 500 1 ARG B 48 0.21 SIDE CHAIN REMARK 500 2 ARG A 5 0.28 SIDE CHAIN REMARK 500 2 ARG A 29 0.22 SIDE CHAIN REMARK 500 2 ARG A 42 0.27 SIDE CHAIN REMARK 500 2 ARG A 48 0.25 SIDE CHAIN REMARK 500 2 ARG B 5 0.29 SIDE CHAIN REMARK 500 2 ARG B 29 0.22 SIDE CHAIN REMARK 500 2 ARG B 42 0.27 SIDE CHAIN REMARK 500 2 ARG B 48 0.25 SIDE CHAIN REMARK 500 3 ARG A 5 0.26 SIDE CHAIN REMARK 500 3 ARG A 19 0.30 SIDE CHAIN REMARK 500 3 ARG A 29 0.22 SIDE CHAIN REMARK 500 3 ARG A 35 0.23 SIDE CHAIN REMARK 500 3 ARG A 42 0.29 SIDE CHAIN REMARK 500 3 ARG A 48 0.20 SIDE CHAIN REMARK 500 3 ARG B 5 0.26 SIDE CHAIN REMARK 500 3 ARG B 19 0.30 SIDE CHAIN REMARK 500 3 ARG B 29 0.22 SIDE CHAIN REMARK 500 3 ARG B 35 0.24 SIDE CHAIN REMARK 500 3 ARG B 42 0.29 SIDE CHAIN REMARK 500 3 ARG B 48 0.20 SIDE CHAIN REMARK 500 4 ARG A 5 0.32 SIDE CHAIN REMARK 500 4 ARG A 19 0.26 SIDE CHAIN REMARK 500 4 ARG A 29 0.16 SIDE CHAIN REMARK 500 4 ARG A 35 0.31 SIDE CHAIN REMARK 500 4 ARG A 42 0.23 SIDE CHAIN REMARK 500 4 ARG A 48 0.11 SIDE CHAIN REMARK 500 4 ARG B 5 0.32 SIDE CHAIN REMARK 500 4 ARG B 19 0.26 SIDE CHAIN REMARK 500 4 ARG B 29 0.16 SIDE CHAIN REMARK 500 4 ARG B 35 0.31 SIDE CHAIN REMARK 500 4 ARG B 42 0.22 SIDE CHAIN REMARK 500 4 ARG B 48 0.11 SIDE CHAIN REMARK 500 5 ARG A 5 0.28 SIDE CHAIN REMARK 500 5 ARG A 19 0.24 SIDE CHAIN REMARK 500 5 ARG A 29 0.14 SIDE CHAIN REMARK 500 5 ARG A 35 0.28 SIDE CHAIN REMARK 500 5 ARG A 42 0.31 SIDE CHAIN REMARK 500 5 ARG A 48 0.10 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 206 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K6L A 1 51 UNP Q8NL33 Q8NL33_XANAC 1 51 DBREF 2K6L B 1 51 UNP Q8NL33 Q8NL33_XANAC 1 51 SEQRES 1 A 51 MET ASN THR VAL ARG TRP ASN ILE ALA VAL SER PRO ASP SEQRES 2 A 51 VAL ASP GLN SER VAL ARG MET PHE ILE ALA ALA GLN GLY SEQRES 3 A 51 GLY GLY ARG LYS GLY ASP LEU SER ARG PHE ILE GLU ASP SEQRES 4 A 51 ALA VAL ARG ALA TYR LEU PHE GLU ARG ALA VAL GLU SEQRES 1 B 51 MET ASN THR VAL ARG TRP ASN ILE ALA VAL SER PRO ASP SEQRES 2 B 51 VAL ASP GLN SER VAL ARG MET PHE ILE ALA ALA GLN GLY SEQRES 3 B 51 GLY GLY ARG LYS GLY ASP LEU SER ARG PHE ILE GLU ASP SEQRES 4 B 51 ALA VAL ARG ALA TYR LEU PHE GLU ARG ALA VAL GLU HELIX 1 1 SER A 11 GLY A 26 1 16 HELIX 2 2 ASP A 32 GLU A 51 1 20 HELIX 3 3 SER B 11 GLY B 26 1 16 HELIX 4 4 ASP B 32 GLU B 51 1 20 SHEET 1 A 2 VAL A 4 VAL A 10 0 SHEET 2 A 2 VAL B 4 VAL B 10 -1 O VAL B 4 N VAL A 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1