HEADER DE NOVO PROTEIN 18-JUL-08 2K6R TITLE PROTEIN FOLDING ON A HIGHLY RUGGED LANDSCAPE: EXPERIMENTAL OBSERVATION TITLE 2 OF GLASSY DYNAMICS AND STRUCTURAL FRUSTRATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FULL SEQUENCE DESIGN 1 SYNTHETIC SUPERSTABLE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: SYNTHETIC PROTEIN KEYWDS SYNTHETIC PROTEIN, NON-NATURAL AMINO ACIDS, DE NOVO PROTEIN DESIGN, KEYWDS 2 RUGGED FOLDING ENERGY LANDSCAPE, STRUCTURAL FRUSTRATION, DE NOVO KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SADQI,E.DE ALBA,R.PEREZ-JIMENEZ,J.M.SANCHEZ-RUIZ,V.MUNOZ REVDAT 2 08-JUN-16 2K6R 1 HETATM VERSN REVDAT 1 16-JUN-09 2K6R 0 JRNL AUTH M.SADQI,E.DE ALBA,R.PEREZ-JIMENEZ,J.M.SANCHEZ-RUIZ,V.MUNOZ JRNL TITL A DESIGNED PROTEIN AS EXPERIMENTAL MODEL OF PRIMORDIAL JRNL TITL 2 FOLDING JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 4127 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19240216 JRNL DOI 10.1073/PNAS.0812108106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-08. REMARK 100 THE RCSB ID CODE IS RCSB100746. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 323 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FSD-1SS, 0.05MM DSS, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D DQF-COSY; 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, TOPSPIN, SPARKY, X- REMARK 210 PLOR_NIH, TALOS REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 NAL A 7 -42.84 -23.77 REMARK 500 2 NAL A 7 -53.15 -28.05 REMARK 500 3 GLN A 2 98.61 -67.86 REMARK 500 3 DNS A 27 -143.75 -87.16 REMARK 500 5 NAL A 7 -52.86 -14.76 REMARK 500 5 DNS A 27 39.75 -70.50 REMARK 500 7 NAL A 7 -52.29 -15.67 REMARK 500 8 ALA A 6 -61.38 -121.36 REMARK 500 8 NAL A 7 -53.89 -12.19 REMARK 500 10 DNS A 27 -144.02 -95.26 REMARK 500 11 GLN A 2 98.35 -68.88 REMARK 500 11 DNS A 27 -162.52 -78.81 REMARK 500 12 DNS A 27 99.06 -64.91 REMARK 500 13 NAL A 7 -53.64 -20.96 REMARK 500 13 DNS A 27 28.59 -77.43 REMARK 500 15 NAL A 7 -43.56 -25.68 REMARK 500 17 NAL A 7 -53.02 -28.72 REMARK 500 17 DNS A 27 -108.20 -69.73 REMARK 500 20 ALA A 6 -61.31 -120.98 REMARK 500 20 NAL A 7 -53.60 -12.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FSV RELATED DB: PDB REMARK 900 BETA-BETA-ALPHA FOLD REMARK 900 RELATED ID: 1FME RELATED DB: PDB REMARK 900 BETA-BETA-ALPHA FOLD DBREF 2K6R A 1 29 PDB 2K6R 2K6R 1 29 SEQRES 1 A 29 GLY GLN GLN TYR THR ALA NAL ILE LYS GLY ARG THR PHE SEQRES 2 A 29 ARG ASN GLU LYS GLU LEU ARG ASP PHE ILE GLU LYS PHE SEQRES 3 A 29 DNS GLY ARG MODRES 2K6R NAL A 7 ALA BETA-(2-NAPHTHYL)-ALANINE MODRES 2K6R DNS A 27 LYS HET NAL A 7 26 HET DNS A 27 48 HETNAM NAL BETA-(2-NAPHTHYL)-ALANINE HETNAM DNS N~6~-{[5-(DIMETHYLAMINO)-1-NAPHTHYL]SULFONYL}-L-LYSINE HETSYN DNS DANSYLLYSINE; DNS-LYSINE; N(EPSILON)-DANSYL-L-LYSINE FORMUL 1 NAL C13 H13 N O2 FORMUL 1 DNS C18 H25 N3 O4 S HELIX 1 1 ASN A 15 DNS A 27 1 13 LINK C ALA A 6 N NAL A 7 1555 1555 1.30 LINK C PHE A 26 N DNS A 27 1555 1555 1.31 LINK C DNS A 27 N GLY A 28 1555 1555 1.31 LINK C NAL A 7 N ILE A 8 1555 1555 1.30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1