HEADER HYDROLASE 12-AUG-08 2K7J TITLE HUMAN ACYLPHOSPHATASE(ACPH) SURFACE CHARGE-OPTIMIZED COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYLPHOSPHATASE-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACYLPHOSPHATE PHOSPHOHYDROLASE 1, ACYLPHOSPHATASE, ORGAN- COMPND 5 COMMON TYPE ISOZYME, ACYLPHOSPHATASE, ERYTHROCYTE ISOZYME; COMPND 6 EC: 3.6.1.7; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACYP1, ACYPE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGIA KEYWDS PROTEIN, ACETYLATION, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.V.GRIBENKO,M.M.PATEL,J.LIU,S.A.MCCALLUM,C.WANG,G.I.MAKHATADZE REVDAT 4 22-MAY-24 2K7J 1 REMARK REVDAT 3 20-OCT-21 2K7J 1 REMARK SEQADV REVDAT 2 10-MAR-09 2K7J 1 JRNL REVDAT 1 17-FEB-09 2K7J 0 JRNL AUTH A.V.GRIBENKO,M.M.PATEL,J.LIU,S.A.MCCALLUM,C.WANG, JRNL AUTH 2 G.I.MAKHATADZE JRNL TITL RATIONAL STABILIZATION OF ENZYMES BY COMPUTATIONAL REDESIGN JRNL TITL 2 OF SURFACE CHARGE-CHARGE INTERACTIONS JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 2601 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19196981 JRNL DOI 10.1073/PNAS.0808220106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000100774. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.7 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCACB; REMARK 210 3D HN(CO)CA; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D 1H-15N TOCSY; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, TOPSPIN 2.0, NMRPIPE, REMARK 210 SPARKY REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 22 78.84 -114.98 REMARK 500 1 GLU A 73 -71.10 -72.67 REMARK 500 1 LYS A 82 -72.24 -100.74 REMARK 500 1 ASN A 83 112.69 -171.49 REMARK 500 2 ASN A 5 49.35 -92.81 REMARK 500 2 LYS A 17 46.55 -91.03 REMARK 500 2 PHE A 23 68.82 -107.18 REMARK 500 2 GLN A 49 93.52 -66.88 REMARK 500 2 LYS A 82 -72.60 -101.90 REMARK 500 2 ASN A 83 120.09 -171.23 REMARK 500 3 THR A 6 79.43 -114.75 REMARK 500 3 VAL A 18 41.27 -105.85 REMARK 500 3 GLN A 19 -72.74 -88.70 REMARK 500 3 GLN A 49 94.90 -62.28 REMARK 500 3 GLU A 67 -60.99 -121.89 REMARK 500 3 ARG A 69 56.62 -92.38 REMARK 500 3 GLU A 73 -72.84 -69.29 REMARK 500 3 SER A 74 -177.20 -66.78 REMARK 500 3 LYS A 82 -72.05 -99.22 REMARK 500 3 ASN A 83 111.92 -169.78 REMARK 500 4 LYS A 17 45.72 -91.53 REMARK 500 4 GLN A 19 -74.58 -97.94 REMARK 500 4 ARG A 45 -40.31 -131.73 REMARK 500 4 GLU A 73 -74.46 -68.86 REMARK 500 4 LYS A 82 -73.17 -84.58 REMARK 500 4 ASN A 83 107.21 -169.02 REMARK 500 5 THR A 43 171.98 -54.45 REMARK 500 5 GLN A 49 100.81 -57.72 REMARK 500 5 ASN A 83 96.14 -68.42 REMARK 500 6 ASN A 5 64.19 -115.25 REMARK 500 6 VAL A 18 37.50 -98.09 REMARK 500 6 GLN A 49 103.94 -54.99 REMARK 500 6 ASN A 80 134.91 -174.72 REMARK 500 6 LYS A 82 -72.21 -101.85 REMARK 500 6 ASN A 83 121.61 -171.82 REMARK 500 7 GLN A 19 105.42 -54.10 REMARK 500 7 PHE A 22 53.75 -106.33 REMARK 500 7 TRP A 39 144.67 -174.88 REMARK 500 7 GLN A 49 93.36 -66.99 REMARK 500 7 THR A 68 -40.32 -133.35 REMARK 500 7 LYS A 82 -74.40 -87.02 REMARK 500 7 ASN A 83 102.35 -165.79 REMARK 500 7 GLU A 84 178.25 -56.81 REMARK 500 8 ASN A 5 69.61 -105.78 REMARK 500 8 THR A 6 76.60 -100.51 REMARK 500 8 VAL A 21 146.35 -175.56 REMARK 500 8 PHE A 22 55.83 -113.72 REMARK 500 8 LEU A 34 -64.21 -94.11 REMARK 500 9 GLN A 19 -74.46 -69.31 REMARK 500 9 PHE A 22 58.42 -114.20 REMARK 500 REMARK 500 THIS ENTRY HAS 122 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K7K RELATED DB: PDB DBREF 2K7J A 2 99 UNP P07311 ACYP1_HUMAN 2 99 SEQADV 2K7J GLY A 1 UNP P07311 EXPRESSION TAG SEQADV 2K7J LYS A 51 UNP P07311 GLN 51 ENGINEERED MUTATION SEQADV 2K7J GLU A 61 UNP P07311 HIS 61 ENGINEERED MUTATION SEQADV 2K7J LYS A 64 UNP P07311 GLU 64 ENGINEERED MUTATION SEQADV 2K7J GLU A 73 UNP P07311 LYS 73 ENGINEERED MUTATION SEQADV 2K7J LYS A 82 UNP P07311 ASN 82 ENGINEERED MUTATION SEQRES 1 A 99 GLY ALA GLU GLY ASN THR LEU ILE SER VAL ASP TYR GLU SEQRES 2 A 99 ILE PHE GLY LYS VAL GLN GLY VAL PHE PHE ARG LYS HIS SEQRES 3 A 99 THR GLN ALA GLU GLY LYS LYS LEU GLY LEU VAL GLY TRP SEQRES 4 A 99 VAL GLN ASN THR ASP ARG GLY THR VAL GLN GLY LYS LEU SEQRES 5 A 99 GLN GLY PRO ILE SER LYS VAL ARG GLU MET GLN LYS TRP SEQRES 6 A 99 LEU GLU THR ARG GLY SER PRO GLU SER HIS ILE ASP LYS SEQRES 7 A 99 ALA ASN PHE LYS ASN GLU LYS VAL ILE LEU LYS LEU ASP SEQRES 8 A 99 TYR SER ASP PHE GLN ILE VAL LYS HELIX 1 1 PHE A 23 GLY A 35 1 13 HELIX 2 2 ILE A 56 THR A 68 1 13 SHEET 1 A 2 LEU A 7 ILE A 14 0 SHEET 2 A 2 VAL A 48 PRO A 55 -1 O LEU A 52 N VAL A 10 SHEET 1 B 2 GLY A 38 VAL A 40 0 SHEET 2 B 2 PHE A 95 ILE A 97 1 O GLN A 96 N GLY A 38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1