HEADER TRANSCRIPTION 20-AUG-08 2K7S TITLE HUMAN ARNT C-TERMINAL PAS DOMAIN, 3 RESIDUE IB SLIP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARNT PAS-B; COMPND 5 SYNONYM: ARNT PROTEIN, DIOXIN RECEPTOR, NUCLEAR TRANSLOCATOR, COMPND 6 HYPOXIA-INDUCIBLE FACTOR 1 BETA, HIF-1 BETA; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARNT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS-PARALLEL KEYWDS ARNT PAS-B, BETA-STRAND SLIP, PAS DOMAIN, ACTIVATOR, ALTERNATIVE KEYWDS 2 SPLICING, DNA-BINDING, NUCLEUS, POLYMORPHISM, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.R.EVANS,P.B.CARD,K.H.GARDNER REVDAT 5 08-MAY-24 2K7S 1 REMARK REVDAT 4 20-OCT-21 2K7S 1 SEQADV REVDAT 3 19-FEB-20 2K7S 1 REMARK SEQADV REVDAT 2 10-MAR-09 2K7S 1 JRNL REVDAT 1 20-JAN-09 2K7S 0 JRNL AUTH M.R.EVANS,P.B.CARD,K.H.GARDNER JRNL TITL ARNT PAS-B HAS A FRAGILE NATIVE STATE STRUCTURE WITH AN JRNL TITL 2 ALTERNATIVE BETA-SHEET REGISTER NEARBY IN SEQUENCE SPACE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 2617 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19196990 JRNL DOI 10.1073/PNAS.0808270106 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.B.CARD,P.J.A.ERBEL,K.H.GARDNER REMARK 1 TITL STRUCTURAL BASIS OF ARNT PAS-B DIMERIZATION: USE OF A COMMON REMARK 1 TITL 2 BETA-SHEET INTERFACE FOR HETERO- AND HOMODIMERIZATION REMARK 1 REF J.MOL.BIOL. V. 353 664 2005 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, CNS 1.2 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K7S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000100783. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 17 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 900 UM [U-98% 13C; U-98% 15N] REMARK 210 ARNT PAS-B SLIPPED IB STRAND, 50 REMARK 210 MM TRIS, 17 MM SODIUM CHLORIDE, REMARK 210 5 MM DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 2D 1H-1H TOCSY; 2D 1H-1H REMARK 210 NOESY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.2.2, ARIA 2.1, CNS 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 33.81 -146.08 REMARK 500 1 CYS A 7 -82.55 -71.94 REMARK 500 1 THR A 10 -44.83 171.02 REMARK 500 1 PHE A 24 146.95 -172.35 REMARK 500 1 HIS A 27 -12.80 -49.92 REMARK 500 1 LYS A 68 85.45 32.88 REMARK 500 1 TRP A 85 90.04 -69.12 REMARK 500 1 SER A 91 72.08 -113.11 REMARK 500 1 ALA A 95 172.83 -53.00 REMARK 500 1 GLN A 96 -83.85 -76.63 REMARK 500 1 TYR A 99 30.68 -82.96 REMARK 500 1 GLU A 102 -155.81 -90.70 REMARK 500 1 ASN A 110 -152.96 -97.93 REMARK 500 1 THR A 111 -171.75 53.84 REMARK 500 1 LYS A 114 -68.89 -130.33 REMARK 500 2 MET A 3 -90.71 58.22 REMARK 500 2 CYS A 7 -77.54 -51.60 REMARK 500 2 THR A 10 -42.65 169.08 REMARK 500 2 PHE A 24 147.05 -173.66 REMARK 500 2 LYS A 68 75.04 31.39 REMARK 500 2 SER A 91 70.34 -112.53 REMARK 500 2 THR A 94 117.31 -38.62 REMARK 500 2 ALA A 95 173.85 -50.25 REMARK 500 2 GLN A 96 -86.05 -73.50 REMARK 500 2 GLU A 102 -154.87 -88.19 REMARK 500 2 LYS A 114 -82.41 -62.94 REMARK 500 2 SER A 116 -171.36 60.22 REMARK 500 2 SER A 117 -169.62 -67.63 REMARK 500 2 GLN A 118 -79.84 -59.60 REMARK 500 3 ALA A 2 -60.41 -146.53 REMARK 500 3 ASP A 4 -60.46 -95.09 REMARK 500 3 ASN A 5 126.61 64.95 REMARK 500 3 CYS A 7 -72.08 -76.40 REMARK 500 3 PRO A 9 -157.51 -92.31 REMARK 500 3 THR A 10 -45.77 175.92 REMARK 500 3 LYS A 68 86.79 31.11 REMARK 500 3 SER A 91 69.34 -113.47 REMARK 500 3 ALA A 95 170.00 -48.73 REMARK 500 3 GLN A 96 -91.39 -64.65 REMARK 500 3 GLU A 102 -158.82 -92.86 REMARK 500 3 ASN A 110 -75.62 -117.92 REMARK 500 3 ASN A 112 76.73 -165.91 REMARK 500 3 VAL A 113 94.37 61.74 REMARK 500 3 LYS A 114 154.51 64.54 REMARK 500 3 ASN A 115 -172.21 59.11 REMARK 500 4 ASP A 4 55.28 -169.94 REMARK 500 4 ASN A 5 -73.46 -65.04 REMARK 500 4 CYS A 7 -70.42 -79.58 REMARK 500 4 THR A 10 -45.29 172.08 REMARK 500 4 PHE A 24 147.54 -171.81 REMARK 500 REMARK 500 THIS ENTRY HAS 315 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X0O RELATED DB: PDB REMARK 900 ARNT PAS-B WILDTYPE REMARK 900 RELATED ID: 15928 RELATED DB: BMRB DBREF 2K7S A 5 119 UNP P27540 ARNT_HUMAN 356 470 SEQADV 2K7S GLY A 1 UNP P27540 EXPRESSION TAG SEQADV 2K7S ALA A 2 UNP P27540 EXPRESSION TAG SEQADV 2K7S MET A 3 UNP P27540 EXPRESSION TAG SEQADV 2K7S ASP A 4 UNP P27540 EXPRESSION TAG SEQADV 2K7S GLN A 93 UNP P27540 PHE 444 ENGINEERED MUTATION SEQADV 2K7S ALA A 95 UNP P27540 PHE 446 ENGINEERED MUTATION SEQADV 2K7S THR A 105 UNP P27540 TYR 456 ENGINEERED MUTATION SEQRES 1 A 119 GLY ALA MET ASP ASN VAL CYS GLN PRO THR GLU PHE ILE SEQRES 2 A 119 SER ARG HIS ASN ILE GLU GLY ILE PHE THR PHE VAL ASP SEQRES 3 A 119 HIS ARG CYS VAL ALA THR VAL GLY TYR GLN PRO GLN GLU SEQRES 4 A 119 LEU LEU GLY LYS ASN ILE VAL GLU PHE CYS HIS PRO GLU SEQRES 5 A 119 ASP GLN GLN LEU LEU ARG ASP SER PHE GLN GLN VAL VAL SEQRES 6 A 119 LYS LEU LYS GLY GLN VAL LEU SER VAL MET PHE ARG PHE SEQRES 7 A 119 ARG SER LYS ASN GLN GLU TRP LEU TRP MET ARG THR SER SEQRES 8 A 119 SER GLN THR ALA GLN ASN PRO TYR SER ASP GLU ILE GLU SEQRES 9 A 119 THR ILE ILE CYS THR ASN THR ASN VAL LYS ASN SER SER SEQRES 10 A 119 GLN GLU HELIX 1 1 ARG A 28 VAL A 33 1 6 HELIX 2 2 GLN A 36 LEU A 41 1 6 HELIX 3 3 ASN A 44 CYS A 49 1 6 HELIX 4 4 HIS A 50 LEU A 67 1 18 HELIX 5 5 PRO A 98 GLU A 102 5 5 SHEET 1 A 5 PHE A 22 VAL A 25 0 SHEET 2 A 5 GLU A 11 HIS A 16 -1 N ARG A 15 O PHE A 24 SHEET 3 A 5 ILE A 103 THR A 109 -1 O ILE A 107 N PHE A 12 SHEET 4 A 5 TRP A 85 GLN A 93 -1 N ARG A 89 O CYS A 108 SHEET 5 A 5 LEU A 72 ARG A 79 -1 N PHE A 76 O MET A 88 CISPEP 1 ASN A 97 PRO A 98 1 0.60 CISPEP 2 ASN A 97 PRO A 98 2 0.19 CISPEP 3 ASN A 97 PRO A 98 3 -0.32 CISPEP 4 ASN A 97 PRO A 98 4 0.24 CISPEP 5 ASN A 97 PRO A 98 5 -0.02 CISPEP 6 ASN A 97 PRO A 98 6 0.21 CISPEP 7 ASN A 97 PRO A 98 7 0.22 CISPEP 8 ASN A 97 PRO A 98 8 0.01 CISPEP 9 ASN A 97 PRO A 98 9 0.32 CISPEP 10 ASN A 97 PRO A 98 10 0.17 CISPEP 11 ASN A 97 PRO A 98 11 0.71 CISPEP 12 ASN A 97 PRO A 98 12 0.17 CISPEP 13 ASN A 97 PRO A 98 13 0.05 CISPEP 14 ASN A 97 PRO A 98 14 0.23 CISPEP 15 ASN A 97 PRO A 98 15 0.29 CISPEP 16 ASN A 97 PRO A 98 16 -0.08 CISPEP 17 ASN A 97 PRO A 98 17 -0.40 CISPEP 18 ASN A 97 PRO A 98 18 0.06 CISPEP 19 ASN A 97 PRO A 98 19 0.64 CISPEP 20 ASN A 97 PRO A 98 20 0.21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1