HEADER PROTEIN TRANSPORT 14-SEP-08 2K8M TITLE S100A13-C2A BINARY COMPLEX STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: RESIDUES 1-128; COMPND 5 SYNONYM: SYT1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN S100-A13; COMPND 9 CHAIN: B, C; COMPND 10 SYNONYM: S100 CALCIUM-BINDING PROTEIN A13; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DKFZP781D2042, HCG_2016754, SYT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: S100A13; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS PROTEIN-PROTEIN COMPLEX, S100A13, C2A, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.K.MOHAN,S.G.RANI,S.M.KUMAR,C.YU REVDAT 3 01-MAY-24 2K8M 1 REMARK SEQADV REVDAT 2 18-APR-12 2K8M 1 JRNL VERSN REVDAT 1 17-MAR-09 2K8M 0 JRNL AUTH S.K.MOHAN,S.G.RANI,S.M.KUMAR,C.YU JRNL TITL S100A13-C2A BINARY COMPLEX STRUCTURE-A KEY COMPONENT IN THE JRNL TITL 2 ACIDIC FIBROBLAST GROWTH FACTOR FOR THE NON-CLASSICAL JRNL TITL 3 PATHWAY. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 380 514 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19284995 JRNL DOI 10.1016/J.BBRC.2009.01.143 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2, CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON, REMARK 3 WARREN (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA/CNS AND HADDOCK REMARK 4 REMARK 4 2K8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000100813. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.7 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 25 MM [U-100% 15N] SODIUM REMARK 210 PHOSPHATE, 100 MM [U-100% 13C] REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2 & 2.2, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU D 103 HZ2 LYS D 128 1.53 REMARK 500 OD2 ASP C 52 HZ3 LYS C 59 1.54 REMARK 500 OE1 GLU A 103 HZ2 LYS A 105 1.55 REMARK 500 HZ2 LYS B 98 OE1 GLU C 4 1.58 REMARK 500 OE1 GLU C 58 HZ1 LYS C 59 1.58 REMARK 500 OE2 GLU A 103 HZ1 LYS A 128 1.58 REMARK 500 OE1 GLU C 82 HZ3 LYS C 85 1.59 REMARK 500 OD1 ASP D 39 HZ2 LYS D 61 1.59 REMARK 500 OE1 GLU D 79 HZ2 LYS D 83 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 17 69.83 60.81 REMARK 500 1 LEU A 32 -53.35 -129.06 REMARK 500 1 ASP A 39 72.39 -119.70 REMARK 500 1 LEU A 47 -161.04 -76.58 REMARK 500 1 PRO A 48 -15.13 -45.83 REMARK 500 1 LYS A 52 137.89 -172.20 REMARK 500 1 LYS A 53 102.06 -163.18 REMARK 500 1 LYS A 61 70.90 52.59 REMARK 500 1 ASN A 64 83.90 -155.98 REMARK 500 1 LYS A 74 90.38 -64.88 REMARK 500 1 PHE A 92 54.46 -140.72 REMARK 500 1 PHE A 95 -65.15 -146.18 REMARK 500 1 ASP A 99 -164.06 -129.28 REMARK 500 1 HIS A 115 -91.76 -140.85 REMARK 500 1 ARG B 29 71.79 63.89 REMARK 500 1 LYS B 30 85.15 -62.08 REMARK 500 1 ASP B 31 -24.84 175.86 REMARK 500 1 THR B 43 46.11 -77.90 REMARK 500 1 GLN B 44 -59.50 -166.65 REMARK 500 1 LEU B 46 57.90 -152.45 REMARK 500 1 LYS B 90 -115.13 53.90 REMARK 500 1 LEU B 93 -44.75 -155.37 REMARK 500 1 LYS B 94 -72.45 -124.87 REMARK 500 1 ARG B 96 -75.21 -112.88 REMARK 500 1 LYS B 97 -164.41 62.31 REMARK 500 1 PRO C 5 129.00 -38.31 REMARK 500 1 ARG C 25 18.47 -169.19 REMARK 500 1 GLU C 27 -70.05 -82.08 REMARK 500 1 ARG C 29 124.33 69.18 REMARK 500 1 THR C 43 37.17 -88.11 REMARK 500 1 GLN C 44 -48.37 -165.72 REMARK 500 1 SER C 55 34.60 -93.71 REMARK 500 1 ASN C 74 -58.73 -169.55 REMARK 500 1 LYS C 90 -50.52 -139.57 REMARK 500 1 LEU C 93 -155.00 -159.76 REMARK 500 1 LYS C 94 -74.34 78.16 REMARK 500 1 ILE C 95 -146.73 40.37 REMARK 500 1 ARG C 96 104.87 -167.13 REMARK 500 1 ASN D 17 70.56 63.90 REMARK 500 1 LEU D 32 -51.98 -135.03 REMARK 500 1 ASP D 39 75.41 -114.93 REMARK 500 1 LEU D 47 -169.25 -74.63 REMARK 500 1 PRO D 48 -17.08 -43.51 REMARK 500 1 LYS D 52 139.97 -172.83 REMARK 500 1 ASN D 64 78.68 -154.29 REMARK 500 1 ASN D 68 66.41 63.74 REMARK 500 1 LYS D 74 93.86 -62.11 REMARK 500 1 VAL D 75 134.13 -176.51 REMARK 500 1 PHE D 95 -54.34 -146.09 REMARK 500 1 ASP D 99 -166.27 -113.92 REMARK 500 REMARK 500 THIS ENTRY HAS 1045 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K8M A 3 128 UNP Q6AI31 Q6AI31_HUMAN 143 268 DBREF 2K8M B 1 98 UNP Q99584 S10AD_HUMAN 1 98 DBREF 2K8M C 1 98 UNP Q99584 S10AD_HUMAN 1 98 DBREF 2K8M D 3 128 UNP Q6AI31 Q6AI31_HUMAN 143 268 SEQADV 2K8M GLU A 1 UNP Q6AI31 EXPRESSION TAG SEQADV 2K8M LYS A 2 UNP Q6AI31 EXPRESSION TAG SEQADV 2K8M GLU D 1 UNP Q6AI31 EXPRESSION TAG SEQADV 2K8M LYS D 2 UNP Q6AI31 EXPRESSION TAG SEQRES 1 A 128 GLU LYS LEU GLY LYS LEU GLN TYR SER LEU ASP TYR ASP SEQRES 2 A 128 PHE GLN ASN ASN GLN LEU LEU VAL GLY ILE ILE GLN ALA SEQRES 3 A 128 ALA GLU LEU PRO ALA LEU ASP MET GLY GLY THR SER ASP SEQRES 4 A 128 PRO TYR VAL LYS VAL PHE LEU LEU PRO ASP LYS LYS LYS SEQRES 5 A 128 LYS PHE GLU THR LYS VAL HIS ARG LYS THR LEU ASN PRO SEQRES 6 A 128 VAL PHE ASN GLU GLN PHE THR PHE LYS VAL PRO TYR SER SEQRES 7 A 128 GLU LEU GLY GLY LYS THR LEU VAL MET ALA VAL TYR ASP SEQRES 8 A 128 PHE ASP ARG PHE SER LYS HIS ASP ILE ILE GLY GLU PHE SEQRES 9 A 128 LYS VAL PRO MET ASN THR VAL ASP PHE GLY HIS VAL THR SEQRES 10 A 128 GLU GLU TRP ARG ASP LEU GLN SER ALA GLU LYS SEQRES 1 B 98 MET ALA ALA GLU PRO LEU THR GLU LEU GLU GLU SER ILE SEQRES 2 B 98 GLU THR VAL VAL THR THR PHE PHE THR PHE ALA ARG GLN SEQRES 3 B 98 GLU GLY ARG LYS ASP SER LEU SER VAL ASN GLU PHE LYS SEQRES 4 B 98 GLU LEU VAL THR GLN GLN LEU PRO HIS LEU LEU LYS ASP SEQRES 5 B 98 VAL GLY SER LEU ASP GLU LYS MET LYS SER LEU ASP VAL SEQRES 6 B 98 ASN GLN ASP SER GLU LEU LYS PHE ASN GLU TYR TRP ARG SEQRES 7 B 98 LEU ILE GLY GLU LEU ALA LYS GLU ILE ARG LYS LYS LYS SEQRES 8 B 98 ASP LEU LYS ILE ARG LYS LYS SEQRES 1 C 98 MET ALA ALA GLU PRO LEU THR GLU LEU GLU GLU SER ILE SEQRES 2 C 98 GLU THR VAL VAL THR THR PHE PHE THR PHE ALA ARG GLN SEQRES 3 C 98 GLU GLY ARG LYS ASP SER LEU SER VAL ASN GLU PHE LYS SEQRES 4 C 98 GLU LEU VAL THR GLN GLN LEU PRO HIS LEU LEU LYS ASP SEQRES 5 C 98 VAL GLY SER LEU ASP GLU LYS MET LYS SER LEU ASP VAL SEQRES 6 C 98 ASN GLN ASP SER GLU LEU LYS PHE ASN GLU TYR TRP ARG SEQRES 7 C 98 LEU ILE GLY GLU LEU ALA LYS GLU ILE ARG LYS LYS LYS SEQRES 8 C 98 ASP LEU LYS ILE ARG LYS LYS SEQRES 1 D 128 GLU LYS LEU GLY LYS LEU GLN TYR SER LEU ASP TYR ASP SEQRES 2 D 128 PHE GLN ASN ASN GLN LEU LEU VAL GLY ILE ILE GLN ALA SEQRES 3 D 128 ALA GLU LEU PRO ALA LEU ASP MET GLY GLY THR SER ASP SEQRES 4 D 128 PRO TYR VAL LYS VAL PHE LEU LEU PRO ASP LYS LYS LYS SEQRES 5 D 128 LYS PHE GLU THR LYS VAL HIS ARG LYS THR LEU ASN PRO SEQRES 6 D 128 VAL PHE ASN GLU GLN PHE THR PHE LYS VAL PRO TYR SER SEQRES 7 D 128 GLU LEU GLY GLY LYS THR LEU VAL MET ALA VAL TYR ASP SEQRES 8 D 128 PHE ASP ARG PHE SER LYS HIS ASP ILE ILE GLY GLU PHE SEQRES 9 D 128 LYS VAL PRO MET ASN THR VAL ASP PHE GLY HIS VAL THR SEQRES 10 D 128 GLU GLU TRP ARG ASP LEU GLN SER ALA GLU LYS HELIX 1 1 PRO A 76 LEU A 80 5 5 HELIX 2 2 THR B 7 ALA B 24 1 18 HELIX 3 3 VAL B 35 LEU B 46 1 12 HELIX 4 4 LEU B 56 ASP B 64 1 9 HELIX 5 5 LYS B 72 ILE B 87 1 16 HELIX 6 6 THR C 7 ALA C 24 1 18 HELIX 7 7 SER C 34 THR C 43 1 10 HELIX 8 8 SER C 55 ASP C 64 1 10 HELIX 9 9 TYR C 76 GLU C 86 1 11 HELIX 10 10 ASP D 33 THR D 37 5 5 HELIX 11 11 PRO D 76 LEU D 80 5 5 HELIX 12 12 ASN D 109 VAL D 111 5 3 SHEET 1 A 4 GLN A 70 LYS A 74 0 SHEET 2 A 4 GLN A 18 ALA A 27 -1 N VAL A 21 O PHE A 71 SHEET 3 A 4 GLY A 4 ASP A 13 -1 N GLN A 7 O ILE A 24 SHEET 4 A 4 VAL A 116 LEU A 123 -1 O ARG A 121 N LEU A 6 SHEET 1 B 4 PHE A 54 GLU A 55 0 SHEET 2 B 4 TYR A 41 PHE A 45 -1 N VAL A 44 O PHE A 54 SHEET 3 B 4 THR A 84 TYR A 90 -1 O TYR A 90 N TYR A 41 SHEET 4 B 4 ILE A 100 PRO A 107 -1 O PHE A 104 N MET A 87 SHEET 1 C 2 LEU B 33 SER B 34 0 SHEET 2 C 2 GLU B 70 LEU B 71 -1 O LEU B 71 N LEU B 33 SHEET 1 D 7 PRO D 40 LEU D 46 0 SHEET 2 D 7 THR D 84 ASP D 91 -1 O ALA D 88 N LYS D 43 SHEET 3 D 7 GLY D 102 PRO D 107 -1 O PHE D 104 N MET D 87 SHEET 4 D 7 VAL D 116 SER D 125 -1 O GLN D 124 N GLU D 103 SHEET 5 D 7 GLY D 4 ASP D 13 -1 N LEU D 6 O ARG D 121 SHEET 6 D 7 GLN D 18 ALA D 27 -1 O ALA D 27 N LYS D 5 SHEET 7 D 7 GLN D 70 LYS D 74 -1 O PHE D 71 N VAL D 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1