HEADER HORMONE 22-SEP-08 2K8R TITLE SOLUTION STRUCTURE OF HUMAN ACIDIC FIBROBLAST GROWTH FACTOR IN COMPLEX TITLE 2 WITH ANTI-ANGIOGENIC DRUG INOSITOL HEXAPHOSPHATE (IP6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARIN-BINDING GROWTH FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-155; COMPND 5 SYNONYM: HBGF-1, ACIDIC FIBROBLAST GROWTH FACTOR, AFGF, BETA- COMPND 6 ENDOTHELIAL CELL GROWTH FACTOR, ECGF-BETA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HFGF-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET(20) KEYWDS ACIDIC FIBROBLAST GROWTH FACTOR, ACETYLATION, ANGIOGENESIS, KEYWDS 2 DEVELOPMENTAL PROTEIN, DIFFERENTIATION, GROWTH FACTOR, HEPARIN- KEYWDS 3 BINDING, MITOGEN, POLYMORPHISM, HORMONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.M.KUMAR,S.K.MOHAN,Y.CHIN REVDAT 3 01-MAY-24 2K8R 1 REMARK REVDAT 2 14-OCT-20 2K8R 1 REMARK HETSYN REVDAT 1 13-OCT-09 2K8R 0 JRNL AUTH S.M.KUMAR,S.K.MOHAN,Y.CHIN JRNL TITL SOLUTION STRUCTURE OF HUMAN ACIDIC FIBROBLAST GROWTH FACTOR JRNL TITL 2 IN COMPLEX WITH ANTI-ANGIOGENIC DRUG INOSITOL HEXAPHOSPHATE JRNL TITL 3 (IP6) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.1, CNS REMARK 3 AUTHORS : DR. MICHAEL NILGES, INSTITUT PASTEUR (ARIA), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS REMARK 4 REMARK 4 2K8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000100818. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 1.5 MM INOSITOL REMARK 210 HEXAKISPHOSPHATE, 100 MM REMARK 210 AMMONIUM SULFATE, 25 MM SODIUM REMARK 210 PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-15N TOCSY; 3D C(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 58 HG CYS A 76 1.47 REMARK 500 OD1 ASN A 11 HZ3 LYS A 105 1.47 REMARK 500 O CYS A 110 HZ1 LYS A 111 1.49 REMARK 500 OE2 GLU A 46 HZ2 LYS A 93 1.50 REMARK 500 HH21 ARG A 17 OD2 ASP A 25 1.50 REMARK 500 OE1 GLU A 80 HG SER A 131 1.51 REMARK 500 OE2 GLU A 75 HE2 HIS A 95 1.51 REMARK 500 OE1 GLU A 74 HZ3 LYS A 94 1.53 REMARK 500 O GLN A 38 H LYS A 50 1.53 REMARK 500 O GLY A 26 HG1 THR A 27 1.54 REMARK 500 H TYR A 57 O GLY A 68 1.54 REMARK 500 H ALA A 59 O TYR A 67 1.55 REMARK 500 H GLN A 38 O LYS A 50 1.55 REMARK 500 OD1 ASN A 107 HG SER A 109 1.56 REMARK 500 OE2 GLU A 80 HH TYR A 90 1.56 REMARK 500 HZ3 LYS A 5 OE2 GLU A 80 1.59 REMARK 500 H LEU A 19 O THR A 23 1.60 REMARK 500 O ARG A 81 H THR A 89 1.60 REMARK 500 HZ2 LYS A 50 O GLU A 53 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 4 91.82 -59.15 REMARK 500 1 SER A 10 68.55 -69.38 REMARK 500 1 LEU A 16 41.29 175.82 REMARK 500 1 THR A 27 157.54 172.31 REMARK 500 1 GLN A 33 -104.12 -58.50 REMARK 500 1 ILE A 35 -48.12 -157.60 REMARK 500 1 GLN A 36 113.39 -171.26 REMARK 500 1 SER A 40 -173.57 178.31 REMARK 500 1 ALA A 41 41.19 79.32 REMARK 500 1 THR A 52 120.02 77.84 REMARK 500 1 GLN A 70 98.14 -37.86 REMARK 500 1 THR A 71 85.44 -155.32 REMARK 500 1 GLU A 84 -54.45 65.42 REMARK 500 1 ASN A 85 70.12 -61.71 REMARK 500 1 HIS A 86 49.01 33.54 REMARK 500 1 SER A 92 94.79 -68.43 REMARK 500 1 HIS A 95 44.96 -109.53 REMARK 500 1 ASN A 99 65.83 -66.96 REMARK 500 1 VAL A 102 -144.06 -76.50 REMARK 500 1 SER A 109 94.20 -62.12 REMARK 500 1 ARG A 115 100.40 171.26 REMARK 500 1 HIS A 117 -59.03 167.10 REMARK 500 1 LEU A 124 51.31 -167.93 REMARK 500 2 PRO A 4 106.32 -55.55 REMARK 500 2 ASN A 11 31.62 -145.96 REMARK 500 2 LEU A 16 41.76 172.16 REMARK 500 2 ARG A 30 70.94 -101.69 REMARK 500 2 GLN A 33 -148.78 -81.34 REMARK 500 2 ILE A 35 -46.41 -152.03 REMARK 500 2 GLN A 36 139.22 -178.34 REMARK 500 2 SER A 40 -172.80 -178.74 REMARK 500 2 ALA A 41 15.08 86.89 REMARK 500 2 THR A 52 118.83 77.66 REMARK 500 2 GLN A 70 98.38 -51.80 REMARK 500 2 THR A 71 87.43 -155.41 REMARK 500 2 GLU A 84 -47.86 74.71 REMARK 500 2 ASN A 85 67.86 -66.55 REMARK 500 2 HIS A 95 36.79 -92.24 REMARK 500 2 ASN A 99 94.04 -66.44 REMARK 500 2 VAL A 102 -131.76 -82.19 REMARK 500 2 ARG A 115 134.02 177.87 REMARK 500 2 HIS A 117 -56.40 168.44 REMARK 500 2 ILE A 123 49.99 -144.59 REMARK 500 2 LEU A 124 66.10 -157.53 REMARK 500 2 PRO A 129 60.49 -63.34 REMARK 500 3 PRO A 4 96.23 -59.84 REMARK 500 3 LEU A 16 44.84 170.38 REMARK 500 3 ASP A 32 -163.10 -125.45 REMARK 500 3 GLN A 33 -158.58 -143.97 REMARK 500 3 ILE A 35 -42.91 -155.07 REMARK 500 REMARK 500 THIS ENTRY HAS 423 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP A 134 DBREF 2K8R A 1 133 UNP P05230 FGF1_HUMAN 23 155 SEQRES 1 A 133 TYR LYS LYS PRO LYS LEU LEU TYR CYS SER ASN GLY GLY SEQRES 2 A 133 HIS PHE LEU ARG ILE LEU PRO ASP GLY THR VAL ASP GLY SEQRES 3 A 133 THR ARG ASP ARG SER ASP GLN HIS ILE GLN LEU GLN LEU SEQRES 4 A 133 SER ALA GLU SER VAL GLY GLU VAL TYR ILE LYS SER THR SEQRES 5 A 133 GLU THR GLY GLN TYR LEU ALA MET ASP THR ASP GLY LEU SEQRES 6 A 133 LEU TYR GLY SER GLN THR PRO ASN GLU GLU CYS LEU PHE SEQRES 7 A 133 LEU GLU ARG LEU GLU GLU ASN HIS TYR ASN THR TYR ILE SEQRES 8 A 133 SER LYS LYS HIS ALA GLU LYS ASN TRP PHE VAL GLY LEU SEQRES 9 A 133 LYS LYS ASN GLY SER CYS LYS ARG GLY PRO ARG THR HIS SEQRES 10 A 133 TYR GLY GLN LYS ALA ILE LEU PHE LEU PRO LEU PRO VAL SEQRES 11 A 133 SER SER ASP HET IHP A 134 42 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 2 IHP C6 H18 O24 P6 HELIX 1 1 ASN A 73 GLU A 75 5 3 HELIX 2 2 LYS A 94 ASN A 99 5 6 HELIX 3 3 GLY A 119 ILE A 123 5 5 SHEET 1 A 2 LEU A 7 CYS A 9 0 SHEET 2 A 2 PHE A 125 PRO A 127 -1 O LEU A 126 N TYR A 8 SHEET 1 B 2 PHE A 15 LEU A 19 0 SHEET 2 B 2 THR A 23 GLY A 26 -1 O THR A 23 N LEU A 19 SHEET 1 C 4 LEU A 37 LEU A 39 0 SHEET 2 C 4 GLU A 46 SER A 51 -1 O LYS A 50 N GLN A 38 SHEET 3 C 4 LEU A 77 LEU A 82 -1 O PHE A 78 N VAL A 47 SHEET 4 C 4 ASN A 88 SER A 92 -1 O THR A 89 N ARG A 81 SHEET 1 D 2 ALA A 59 MET A 60 0 SHEET 2 D 2 LEU A 66 TYR A 67 -1 O TYR A 67 N ALA A 59 SITE 1 AC1 7 LYS A 105 LYS A 111 PRO A 114 ARG A 115 SITE 2 AC1 7 TYR A 118 GLY A 119 LYS A 121 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1