HEADER DNA BINDING PROTEIN 15-OCT-08 2K9I TITLE NMR STRUCTURE OF PLASMID COPY CONTROL PROTEIN ORF56 FROM SULFOLOBUS TITLE 2 ISLANDICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN ORF56; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ISLANDICUS; SOURCE 3 ORGANISM_TAXID: 43080; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28C KEYWDS PLASMID COPY CONTROL PROTEIN, RIBBON HELIX HELIX PROTEIN, DNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR U.WEININGER,J.BALBACH REVDAT 4 01-MAY-24 2K9I 1 REMARK REVDAT 3 14-DEC-16 2K9I 1 COMPND VERSN REVDAT 2 27-OCT-09 2K9I 1 JRNL REVDAT 1 20-OCT-09 2K9I 0 JRNL AUTH U.WEININGER,M.ZEEB,P.NEUMANN,C.LOW,M.T.STUBBS,G.LIPPS, JRNL AUTH 2 J.BALBACH JRNL TITL STRUCTURE-BASED STABILITY ANALYSIS OF AN EXTREMELY STABLE JRNL TITL 2 DIMERIC DNA BINDING PROTEIN FROM SULFOLOBUS ISLANDICUS JRNL REF BIOCHEMISTRY V. 48 10030 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19788170 JRNL DOI 10.1021/BI900760N REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000100845. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-13C; U-15N] PROTEIN, 2MM REMARK 210 PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY; 2D 1H-1H NOESY; 2D REMARK 210 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 400 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD13 ILE B 17 HE3 TRP B 21 1.30 REMARK 500 OD2 ASP A 49 HZ1 LYS A 55 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 6 -67.22 64.30 REMARK 500 1 LYS A 55 72.35 57.42 REMARK 500 1 ARG B 3 74.46 62.52 REMARK 500 1 LYS B 6 -51.35 69.59 REMARK 500 2 ASN A 33 61.16 62.73 REMARK 500 2 LEU B 8 46.91 -93.16 REMARK 500 3 TYR B 5 -48.41 70.07 REMARK 500 4 TYR A 5 -37.69 -151.46 REMARK 500 4 PRO A 18 165.98 -49.51 REMARK 500 4 GLN A 54 38.91 -89.93 REMARK 500 4 LYS A 55 -81.89 -127.24 REMARK 500 4 TYR B 5 -65.19 -152.16 REMARK 500 5 TYR A 5 -56.60 -155.80 REMARK 500 5 LEU A 7 -90.60 60.21 REMARK 500 5 LYS A 55 20.00 -147.22 REMARK 500 5 ARG B 3 75.88 51.42 REMARK 500 5 TYR B 5 -27.72 -153.96 REMARK 500 5 LEU B 7 -139.85 57.02 REMARK 500 5 GLN B 54 57.61 -91.24 REMARK 500 6 ARG A 3 80.55 55.50 REMARK 500 6 LYS A 6 74.37 54.65 REMARK 500 6 LEU A 7 -56.96 -155.27 REMARK 500 6 HIS A 51 -62.45 -93.86 REMARK 500 6 ARG B 3 80.79 58.62 REMARK 500 6 LEU B 7 -60.11 -92.37 REMARK 500 7 TYR A 5 -79.84 60.87 REMARK 500 7 LYS A 6 -73.82 -86.22 REMARK 500 7 LEU A 7 -55.66 -153.40 REMARK 500 7 ASN A 9 42.58 -83.95 REMARK 500 7 LYS A 53 -73.97 -55.98 REMARK 500 7 TYR B 5 -85.32 62.92 REMARK 500 7 LYS B 6 -64.87 -107.21 REMARK 500 7 LEU B 7 -71.82 -149.73 REMARK 500 7 HIS B 51 -64.34 -95.21 REMARK 500 8 TYR A 5 -71.86 -147.75 REMARK 500 8 LYS A 6 21.35 -140.46 REMARK 500 8 LEU A 7 134.20 72.41 REMARK 500 8 LEU A 8 82.56 65.09 REMARK 500 8 ASP A 52 151.88 66.10 REMARK 500 8 LYS A 53 -62.30 -162.21 REMARK 500 8 TYR B 5 -80.40 -99.84 REMARK 500 8 LYS B 6 80.11 -150.10 REMARK 500 8 LEU B 8 143.49 69.83 REMARK 500 8 ASP B 52 141.22 64.75 REMARK 500 8 LYS B 53 24.63 -140.43 REMARK 500 8 GLN B 54 58.43 -93.29 REMARK 500 9 LYS A 6 29.03 -145.98 REMARK 500 9 ASP A 52 -77.50 61.85 REMARK 500 9 LYS A 53 -28.05 -178.00 REMARK 500 9 LYS A 55 31.47 -99.21 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K9I A 2 56 UNP Q54323 Q54323_SULIS 2 56 DBREF 2K9I B 2 56 UNP Q54323 Q54323_SULIS 2 56 SEQRES 1 A 55 GLY ARG PRO TYR LYS LEU LEU ASN GLY ILE LYS LEU GLY SEQRES 2 A 55 VAL TYR ILE PRO GLN GLU TRP HIS ASP ARG LEU MET GLU SEQRES 3 A 55 ILE ALA LYS GLU LYS ASN LEU THR LEU SER ASP VAL CYS SEQRES 4 A 55 ARG LEU ALA ILE LYS GLU TYR LEU ASP ASN HIS ASP LYS SEQRES 5 A 55 GLN LYS LYS SEQRES 1 B 55 GLY ARG PRO TYR LYS LEU LEU ASN GLY ILE LYS LEU GLY SEQRES 2 B 55 VAL TYR ILE PRO GLN GLU TRP HIS ASP ARG LEU MET GLU SEQRES 3 B 55 ILE ALA LYS GLU LYS ASN LEU THR LEU SER ASP VAL CYS SEQRES 4 B 55 ARG LEU ALA ILE LYS GLU TYR LEU ASP ASN HIS ASP LYS SEQRES 5 B 55 GLN LYS LYS HELIX 1 1 PRO A 18 ASN A 33 1 16 HELIX 2 2 THR A 35 ASP A 52 1 18 HELIX 3 3 PRO B 18 ASN B 33 1 16 HELIX 4 4 THR B 35 ASP B 52 1 18 SHEET 1 A 2 ILE A 11 ILE A 17 0 SHEET 2 A 2 ILE B 11 ILE B 17 -1 O ILE B 11 N ILE A 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1