HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-OCT-08 2KA0 TITLE NMR STRUCTURE OF THE PROTEIN TM1367 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN TM1367; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM_1367; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSSETA DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS TM1367, TERMOTOGA MARITIMA, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.MOHANTY,B.PEDRINI,P.SERRANO,M.GERALT,R.HORST,T.HERRMANN,I.A.WILSON, AUTHOR 2 K.WUTHRICH,JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 14-JUN-23 2KA0 1 REMARK REVDAT 4 19-FEB-20 2KA0 1 REMARK REVDAT 3 12-JAN-11 2KA0 1 JRNL REVDAT 2 11-AUG-09 2KA0 1 AUTHOR REVDAT 1 13-JAN-09 2KA0 0 JRNL AUTH B.MOHANTY,P.SERRANO,B.PEDRINI,K.JAUDZEMS,M.GERALT,R.HORST, JRNL AUTH 2 T.HERRMANN,M.A.ELSLIGER,I.A.WILSON,K.WUTHRICH JRNL TITL COMPARISON OF NMR AND CRYSTAL STRUCTURES FOR THE PROTEINS JRNL TITL 2 TM1112 AND TM1367. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1381 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944235 JRNL DOI 10.1107/S1744309110020956 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL REMARK 3 AUTHORS : LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000100863. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.2M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 0.5MM DTT, 4.5MM D10- REMARK 210 DTT, 0.03% AZIDE, 50 MM SODIUM REMARK 210 CHLORIDE, 25 MM SODIUM PHOSPHATE, REMARK 210 10 % D2O, 90 % H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D [15N,1H]-HSQC; 2D [13C,1H] REMARK 210 -HSQC; 3D 15N-RESOLVED [1H,1H]- REMARK 210 NOESY; 3D 13C-RESOLVED [1H,1H]- REMARK 210 NOESY (ALIPHATIC 13C); 3D 13C- REMARK 210 RESOLVED [1H,1H]-NOESY (AROMATIC REMARK 210 13C); 4D-APSY-HACANH; 5D-APSY- REMARK 210 HACACONH; 5D-APSY-CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, ATNOS, CANDID 2.0, REMARK 210 TOPSPIN 1.3, CARA, ASCAN, MATCH, REMARK 210 MOLMOL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : CYANA TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 9 OE1 GLU A 115 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 PHE A 7 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 VAL A 117 CA - CB - CG1 ANGL. DEV. = 16.6 DEGREES REMARK 500 4 VAL A 51 CA - CB - CG2 ANGL. DEV. = 9.9 DEGREES REMARK 500 5 PHE A 7 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 5 VAL A 117 CA - CB - CG1 ANGL. DEV. = 15.8 DEGREES REMARK 500 6 ARG A 120 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 6 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 7 VAL A 13 CA - CB - CG2 ANGL. DEV. = 11.1 DEGREES REMARK 500 9 VAL A 66 CG1 - CB - CG2 ANGL. DEV. = -10.5 DEGREES REMARK 500 10 ASP A 15 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 10 VAL A 102 CG1 - CB - CG2 ANGL. DEV. = 10.7 DEGREES REMARK 500 10 VAL A 102 CA - CB - CG1 ANGL. DEV. = 9.4 DEGREES REMARK 500 11 VAL A 102 CG1 - CB - CG2 ANGL. DEV. = 11.3 DEGREES REMARK 500 11 VAL A 102 CA - CB - CG1 ANGL. DEV. = 11.2 DEGREES REMARK 500 16 LEU A 77 CB - CG - CD1 ANGL. DEV. = 11.0 DEGREES REMARK 500 18 VAL A 13 CA - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 19 TYR A 68 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 20 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 41 29.61 -141.20 REMARK 500 1 MET A 84 58.31 -107.17 REMARK 500 1 ASP A 86 -62.41 -137.93 REMARK 500 1 ASP A 113 35.80 -73.29 REMARK 500 1 LYS A 116 88.25 44.19 REMARK 500 1 ALA A 122 -164.67 55.61 REMARK 500 1 SER A 123 16.09 47.18 REMARK 500 2 GLU A 18 45.35 -90.96 REMARK 500 2 TRP A 39 92.62 -160.54 REMARK 500 2 ILE A 63 45.03 -104.19 REMARK 500 2 PHE A 79 14.70 -140.94 REMARK 500 2 LYS A 81 177.44 62.24 REMARK 500 2 MET A 84 -44.93 -147.23 REMARK 500 2 ASP A 86 -58.03 -123.73 REMARK 500 2 ALA A 94 85.59 -68.11 REMARK 500 2 ASP A 113 25.24 -70.31 REMARK 500 2 LYS A 116 87.26 42.24 REMARK 500 2 ALA A 122 115.72 62.03 REMARK 500 3 GLU A 18 20.05 -66.21 REMARK 500 3 TRP A 39 103.30 -166.91 REMARK 500 3 ASN A 50 66.34 -119.46 REMARK 500 3 PHE A 79 22.18 -152.84 REMARK 500 3 ASP A 86 -42.68 -144.35 REMARK 500 3 ILE A 89 77.62 -110.95 REMARK 500 3 ALA A 94 97.46 -61.89 REMARK 500 3 ASP A 113 40.14 -71.05 REMARK 500 3 GLU A 115 22.56 -73.53 REMARK 500 3 LYS A 116 152.95 64.87 REMARK 500 3 ALA A 122 108.55 62.00 REMARK 500 4 GLU A 18 50.26 -97.20 REMARK 500 4 SER A 34 -154.73 -162.63 REMARK 500 4 ASN A 50 21.93 -143.07 REMARK 500 4 ASP A 86 -62.77 -142.33 REMARK 500 4 ALA A 94 102.36 -52.11 REMARK 500 4 VAL A 97 33.06 -80.61 REMARK 500 4 LYS A 112 -169.51 -127.27 REMARK 500 4 LYS A 116 95.02 43.77 REMARK 500 5 GLU A 18 6.60 -69.95 REMARK 500 5 GLU A 41 40.56 -168.75 REMARK 500 5 PHE A 79 15.23 -141.88 REMARK 500 5 PRO A 83 6.52 -68.98 REMARK 500 5 SER A 85 163.52 75.73 REMARK 500 5 ASP A 87 -81.25 -77.97 REMARK 500 5 SER A 93 -176.52 -173.84 REMARK 500 5 VAL A 97 49.97 -83.91 REMARK 500 5 ASP A 113 1.91 -68.01 REMARK 500 5 LYS A 116 101.39 43.07 REMARK 500 5 ALA A 122 -166.38 58.23 REMARK 500 5 SER A 123 -11.90 62.97 REMARK 500 6 GLU A 41 37.96 76.94 REMARK 500 REMARK 500 THIS ENTRY HAS 210 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 123 SER A 124 1 132.90 REMARK 500 GLY A 67 TYR A 68 4 146.09 REMARK 500 SER A 85 ASP A 86 6 143.29 REMARK 500 GLY A 99 LYS A 100 6 131.32 REMARK 500 SER A 85 ASP A 86 7 148.63 REMARK 500 SER A 123 SER A 124 9 -147.99 REMARK 500 ASP A 65 VAL A 66 12 -149.09 REMARK 500 ALA A 94 VAL A 95 12 143.20 REMARK 500 GLY A 99 LYS A 100 12 143.92 REMARK 500 VAL A 35 VAL A 36 15 144.02 REMARK 500 VAL A 66 GLY A 67 18 146.66 REMARK 500 ALA A 94 VAL A 95 19 140.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 PHE A 45 0.09 SIDE CHAIN REMARK 500 4 ARG A 58 0.08 SIDE CHAIN REMARK 500 4 TYR A 68 0.07 SIDE CHAIN REMARK 500 5 TYR A 44 0.09 SIDE CHAIN REMARK 500 5 TYR A 68 0.07 SIDE CHAIN REMARK 500 7 ARG A 58 0.08 SIDE CHAIN REMARK 500 10 TYR A 44 0.06 SIDE CHAIN REMARK 500 12 TYR A 44 0.08 SIDE CHAIN REMARK 500 14 ARG A 2 0.11 SIDE CHAIN REMARK 500 16 ARG A 120 0.09 SIDE CHAIN REMARK 500 17 ARG A 2 0.19 SIDE CHAIN REMARK 500 18 ARG A 2 0.13 SIDE CHAIN REMARK 500 20 ARG A 58 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16007 RELATED DB: BMRB REMARK 900 RELATED ID: 283228 RELATED DB: TARGETDB DBREF 2KA0 A 1 124 UNP Q9X187 Q9X187_THEMA 1 124 SEQRES 1 A 124 MET ARG VAL GLU LEU LEU PHE GLU SER GLY LYS CYS VAL SEQRES 2 A 124 ILE ASP LEU ASN GLU GLU TYR GLU VAL VAL LYS LEU LEU SEQRES 3 A 124 LYS GLU LYS ILE PRO PHE GLU SER VAL VAL ASN THR TRP SEQRES 4 A 124 GLY GLU GLU ILE TYR PHE SER THR PRO VAL ASN VAL GLN SEQRES 5 A 124 LYS MET GLU ASN PRO ARG GLU VAL VAL GLU ILE GLY ASP SEQRES 6 A 124 VAL GLY TYR TRP PRO PRO GLY LYS ALA LEU CYS LEU PHE SEQRES 7 A 124 PHE GLY LYS THR PRO MET SER ASP ASP LYS ILE GLN PRO SEQRES 8 A 124 ALA SER ALA VAL ASN VAL ILE GLY LYS ILE VAL GLU GLY SEQRES 9 A 124 LEU GLU ASP LEU LYS LYS ILE LYS ASP GLY GLU LYS VAL SEQRES 10 A 124 ALA VAL ARG PHE ALA SER SER HELIX 1 1 TYR A 20 LYS A 27 1 8 HELIX 2 2 PRO A 70 LYS A 73 5 4 HELIX 3 3 GLU A 106 ILE A 111 5 6 SHEET 1 A 6 PHE A 32 SER A 34 0 SHEET 2 A 6 VAL A 117 ARG A 120 -1 O VAL A 119 N PHE A 32 SHEET 3 A 6 ARG A 2 LEU A 6 -1 N GLU A 4 O ARG A 120 SHEET 4 A 6 LYS A 11 LEU A 16 -1 O ILE A 14 N VAL A 3 SHEET 5 A 6 GLY A 99 GLU A 103 -1 O LYS A 100 N ASP A 15 SHEET 6 A 6 ASP A 65 VAL A 66 -1 N VAL A 66 O GLY A 99 SHEET 1 B 3 ASN A 37 TRP A 39 0 SHEET 2 B 3 GLU A 42 TYR A 44 -1 O TYR A 44 N ASN A 37 SHEET 3 B 3 LEU A 77 PHE A 78 -1 O LEU A 77 N ILE A 43 SHEET 1 C 2 TYR A 68 TRP A 69 0 SHEET 2 C 2 ALA A 74 LEU A 75 -1 O ALA A 74 N TRP A 69 CISPEP 1 ILE A 30 PRO A 31 1 -8.26 CISPEP 2 ILE A 30 PRO A 31 2 -5.10 CISPEP 3 ILE A 30 PRO A 31 3 -6.98 CISPEP 4 ILE A 30 PRO A 31 4 -7.73 CISPEP 5 ILE A 30 PRO A 31 5 -8.52 CISPEP 6 ILE A 30 PRO A 31 6 -6.08 CISPEP 7 ILE A 30 PRO A 31 7 -24.18 CISPEP 8 ILE A 30 PRO A 31 8 -7.04 CISPEP 9 ILE A 30 PRO A 31 9 -10.83 CISPEP 10 ILE A 30 PRO A 31 10 -14.31 CISPEP 11 ILE A 30 PRO A 31 11 -9.58 CISPEP 12 ILE A 30 PRO A 31 12 -14.21 CISPEP 13 ILE A 30 PRO A 31 13 -10.19 CISPEP 14 ILE A 30 PRO A 31 14 -8.09 CISPEP 15 ILE A 30 PRO A 31 15 -12.10 CISPEP 16 ILE A 30 PRO A 31 16 -7.99 CISPEP 17 ILE A 30 PRO A 31 17 -9.29 CISPEP 18 ILE A 30 PRO A 31 18 -12.60 CISPEP 19 ILE A 30 PRO A 31 19 -11.40 CISPEP 20 ILE A 30 PRO A 31 20 -9.69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1