HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-OCT-08 2KA5 TITLE NMR STRUCTURE OF THE PROTEIN TM1081 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ANTI-SIGMA FACTOR ANTAGONIST TM_1081; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM_1081; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSSETA; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MH4A KEYWDS TM1081, TERMOTOGA MARITHIMA, PHOSPHOPROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.SERRANO,M.GERALT,B.MOHANTY,B.PEDRINI,R.HORST,K.WUTHRICH,I.WILSON, AUTHOR 2 JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 08-MAY-24 2KA5 1 REMARK REVDAT 5 14-JUN-23 2KA5 1 REMARK REVDAT 4 19-FEB-20 2KA5 1 REMARK REVDAT 3 12-JAN-11 2KA5 1 JRNL REVDAT 2 24-FEB-09 2KA5 1 VERSN REVDAT 1 25-NOV-08 2KA5 0 JRNL AUTH P.SERRANO,B.PEDRINI,M.GERALT,K.JAUDZEMS,B.MOHANTY,R.HORST, JRNL AUTH 2 T.HERRMANN,M.A.ELSLIGER,I.A.WILSON,K.WUTHRICH JRNL TITL COMPARISON OF NMR AND CRYSTAL STRUCTURES HIGHLIGHTS JRNL TITL 2 CONFORMATIONAL ISOMERISM IN PROTEIN ACTIVE SITES. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1393 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944236 JRNL DOI 10.1107/S1744309110033658 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, OPAL REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KA5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000100868. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 190 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3 MM [U-98% 13C; U-98% 15N] REMARK 210 TM1081, 0.3 % SODIUM AZIDE, 150 REMARK 210 MM SODIUM CHLORIDE, 20 MM SODIUM REMARK 210 PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCA; 3D REMARK 210 HNCACB; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA, ASCAN, TOPSPIN REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 LEU A 100 CB - CG - CD1 ANGL. DEV. = 15.3 DEGREES REMARK 500 4 VAL A 109 CA - CB - CG2 ANGL. DEV. = 13.7 DEGREES REMARK 500 7 LEU A 48 CB - CG - CD2 ANGL. DEV. = 15.8 DEGREES REMARK 500 7 VAL A 90 CG1 - CB - CG2 ANGL. DEV. = 10.3 DEGREES REMARK 500 7 LEU A 100 CB - CG - CD1 ANGL. DEV. = 14.3 DEGREES REMARK 500 7 TYR A 112 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 9 VAL A 23 CG1 - CB - CG2 ANGL. DEV. = 11.6 DEGREES REMARK 500 9 VAL A 58 CA - CB - CG2 ANGL. DEV. = 9.2 DEGREES REMARK 500 10 VAL A 43 CA - CB - CG2 ANGL. DEV. = 15.0 DEGREES REMARK 500 10 LEU A 100 CB - CG - CD1 ANGL. DEV. = 20.3 DEGREES REMARK 500 11 VAL A 90 CA - CB - CG1 ANGL. DEV. = 9.5 DEGREES REMARK 500 11 VAL A 96 CA - CB - CG1 ANGL. DEV. = 9.5 DEGREES REMARK 500 11 LEU A 100 CB - CG - CD1 ANGL. DEV. = 12.5 DEGREES REMARK 500 11 TYR A 112 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 12 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 13 VAL A 23 CG1 - CB - CG2 ANGL. DEV. = 9.7 DEGREES REMARK 500 13 VAL A 96 CA - CB - CG1 ANGL. DEV. = 9.7 DEGREES REMARK 500 14 PHE A 44 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 14 LEU A 48 CB - CG - CD1 ANGL. DEV. = 17.6 DEGREES REMARK 500 16 TYR A 112 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 17 VAL A 90 CG1 - CB - CG2 ANGL. DEV. = 10.4 DEGREES REMARK 500 17 TYR A 112 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 20 LEU A 100 CB - CG - CD1 ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 148.50 60.52 REMARK 500 1 HIS A 10 43.62 -148.32 REMARK 500 1 HIS A 12 -95.65 -88.77 REMARK 500 1 ASN A 28 -92.55 -122.61 REMARK 500 1 ALA A 36 -64.10 -140.45 REMARK 500 1 PHE A 47 -62.63 -130.35 REMARK 500 1 ASN A 104 73.95 46.71 REMARK 500 1 LEU A 105 -63.13 -105.79 REMARK 500 1 ILE A 108 -53.12 -126.54 REMARK 500 2 ILE A 6 -60.80 -90.11 REMARK 500 2 HIS A 7 102.22 50.69 REMARK 500 2 HIS A 11 104.35 55.31 REMARK 500 2 PRO A 15 49.22 -77.65 REMARK 500 2 VAL A 19 -141.38 -111.19 REMARK 500 2 ASP A 20 -79.21 -29.94 REMARK 500 2 ASP A 21 14.04 -142.82 REMARK 500 2 PRO A 27 44.62 -78.02 REMARK 500 2 ASN A 28 88.77 -49.12 REMARK 500 2 LYS A 29 35.41 36.94 REMARK 500 2 ASN A 32 26.88 -78.82 REMARK 500 2 ILE A 33 -63.09 72.86 REMARK 500 2 PHE A 44 -71.78 -58.19 REMARK 500 2 PHE A 47 -62.73 -138.13 REMARK 500 2 ASN A 53 11.06 -143.44 REMARK 500 2 ASP A 61 30.60 -90.76 REMARK 500 2 PHE A 68 -69.45 -129.29 REMARK 500 2 ASN A 104 79.86 57.96 REMARK 500 2 LEU A 105 -55.44 -128.28 REMARK 500 2 ARG A 124 60.31 -150.80 REMARK 500 3 SER A 3 -6.75 -161.88 REMARK 500 3 ILE A 6 -96.26 53.31 REMARK 500 3 HIS A 9 -178.81 54.73 REMARK 500 3 HIS A 12 -58.46 -121.37 REMARK 500 3 MET A 13 -179.09 53.41 REMARK 500 3 VAL A 19 -143.13 -117.34 REMARK 500 3 ASP A 21 12.15 -141.93 REMARK 500 3 PRO A 27 93.00 -65.12 REMARK 500 3 LYS A 29 -2.01 51.85 REMARK 500 3 GLU A 30 33.32 -71.84 REMARK 500 3 PHE A 47 -58.59 -137.71 REMARK 500 3 ASN A 104 76.69 64.24 REMARK 500 3 LEU A 105 -51.86 -126.84 REMARK 500 3 ILE A 108 -34.74 -130.47 REMARK 500 3 ARG A 124 38.69 -143.71 REMARK 500 4 ASP A 4 -85.58 59.98 REMARK 500 4 HIS A 7 -77.98 -164.94 REMARK 500 4 HIS A 9 17.06 -144.11 REMARK 500 4 HIS A 11 84.09 31.03 REMARK 500 4 MET A 13 144.25 91.57 REMARK 500 4 VAL A 19 -169.19 -115.88 REMARK 500 REMARK 500 THIS ENTRY HAS 303 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 3 ASP A 4 3 128.62 REMARK 500 ASP A 4 LYS A 5 10 145.60 REMARK 500 VAL A 19 ASP A 20 10 -149.59 REMARK 500 MET A 1 GLY A 2 18 145.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 PHE A 39 0.08 SIDE CHAIN REMARK 500 2 ARG A 123 0.08 SIDE CHAIN REMARK 500 2 ARG A 124 0.11 SIDE CHAIN REMARK 500 3 ARG A 98 0.16 SIDE CHAIN REMARK 500 3 ARG A 107 0.08 SIDE CHAIN REMARK 500 3 ARG A 124 0.08 SIDE CHAIN REMARK 500 4 PHE A 87 0.13 SIDE CHAIN REMARK 500 5 PHE A 39 0.10 SIDE CHAIN REMARK 500 6 PHE A 39 0.10 SIDE CHAIN REMARK 500 6 ARG A 98 0.08 SIDE CHAIN REMARK 500 6 ARG A 107 0.15 SIDE CHAIN REMARK 500 7 ARG A 107 0.13 SIDE CHAIN REMARK 500 8 ARG A 98 0.09 SIDE CHAIN REMARK 500 9 ARG A 98 0.11 SIDE CHAIN REMARK 500 9 TYR A 112 0.07 SIDE CHAIN REMARK 500 10 ARG A 123 0.10 SIDE CHAIN REMARK 500 11 ARG A 124 0.21 SIDE CHAIN REMARK 500 12 PHE A 39 0.10 SIDE CHAIN REMARK 500 12 ARG A 124 0.22 SIDE CHAIN REMARK 500 13 PHE A 39 0.07 SIDE CHAIN REMARK 500 13 PHE A 86 0.08 SIDE CHAIN REMARK 500 15 PHE A 86 0.09 SIDE CHAIN REMARK 500 16 TYR A 112 0.07 SIDE CHAIN REMARK 500 17 ARG A 98 0.10 SIDE CHAIN REMARK 500 17 ARG A 123 0.12 SIDE CHAIN REMARK 500 18 TYR A 52 0.07 SIDE CHAIN REMARK 500 19 PHE A 39 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282948 RELATED DB: TARGETDB REMARK 900 RELATED ID: 16019 RELATED DB: BMRB DBREF 2KA5 A 13 125 UNP Q9X0H0 Y1081_THEMA 1 113 SEQADV 2KA5 MET A 1 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 GLY A 2 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 SER A 3 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 ASP A 4 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 LYS A 5 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 ILE A 6 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 HIS A 7 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 HIS A 8 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 HIS A 9 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 HIS A 10 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 HIS A 11 UNP Q9X0H0 EXPRESSION TAG SEQADV 2KA5 HIS A 12 UNP Q9X0H0 EXPRESSION TAG SEQRES 1 A 125 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 125 PHE PRO TYR LYS ILE VAL ASP ASP VAL VAL ILE LEU MET SEQRES 3 A 125 PRO ASN LYS GLU LEU ASN ILE GLU ASN ALA HIS LEU PHE SEQRES 4 A 125 LYS LYS TRP VAL PHE ASP GLU PHE LEU ASN LYS GLY TYR SEQRES 5 A 125 ASN LYS ILE PHE LEU VAL LEU SER ASP VAL GLU SER ILE SEQRES 6 A 125 ASP SER PHE SER LEU GLY VAL ILE VAL ASN ILE LEU LYS SEQRES 7 A 125 SER ILE SER SER SER GLY GLY PHE PHE ALA LEU VAL SER SEQRES 8 A 125 PRO ASN GLU LYS VAL GLU ARG VAL LEU SER LEU THR ASN SEQRES 9 A 125 LEU ASP ARG ILE VAL LYS ILE TYR ASP THR ILE SER GLU SEQRES 10 A 125 ALA MET GLU GLU VAL ARG ARG LYS HELIX 1 1 ASN A 32 ASN A 35 5 4 HELIX 2 2 ALA A 36 PHE A 47 1 12 HELIX 3 3 ASP A 66 GLY A 84 1 19 HELIX 4 4 ASN A 93 THR A 103 1 11 HELIX 5 5 THR A 114 GLU A 120 1 7 SHEET 1 A 5 TYR A 16 ILE A 18 0 SHEET 2 A 5 VAL A 23 LEU A 25 -1 O ILE A 24 N LYS A 17 SHEET 3 A 5 LYS A 54 VAL A 58 1 O PHE A 56 N LEU A 25 SHEET 4 A 5 PHE A 86 VAL A 90 1 O VAL A 90 N LEU A 57 SHEET 5 A 5 LYS A 110 TYR A 112 1 O LYS A 110 N LEU A 89 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1