HEADER TOXIN 11-NOV-08 2KAM TITLE NMR STRUCTURE OF DELTA-TOXIN FROM STAPHYLOCOCCUS AUREUS IN CD3OH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DELTA-HEMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DELTA-LYSIN, DELTA-TOXIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: NCTC 10345 KEYWDS CYTOLYTIC, CYTOLYSIS, FORMYLATION, HEMOLYSIS, MEMBRANE, SECRETED, KEYWDS 2 TOXIN, TRANSMEMBRANE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.LOUREIRO-FERREIRA,J.RODRIGUES,R.M.M.BRITO REVDAT 2 16-MAR-22 2KAM 1 REMARK LINK REVDAT 1 12-MAY-09 2KAM 0 JRNL AUTH N.LOUREIRO-FERREIRA,J.RODRIGUES,T.H.BIRKBECK,R.M.M.BRITO JRNL TITL NMR SOLUTION STRUCTURE OF DELTA-TOXIN IN MEMBRANE-MIMETIC JRNL TITL 2 ENVIRONMENTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 95.0, X-PLOR NIH 2.16.0 REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. (FELIX) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KAM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000100884. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3 MM DELTA-TOXIN, METHANOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 95.0, VNMR 6.1B, X-PLOR REMARK 210 NIH 2.16.0, PROCHECKNMR 3.5.4, REMARK 210 INSIGHT II 95.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE OF DELTA-TOXIN DETERMINED IN CD3OH. A REMARK 210 COMBINATION OF NOE DISTANCE RESTRAINTS AND COUPLING CONSTANTS REMARK 210 WERE USED. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 24 33.35 -99.84 REMARK 500 2 THR A 24 62.10 62.52 REMARK 500 4 LYS A 25 -143.46 35.55 REMARK 500 5 THR A 24 30.64 -84.26 REMARK 500 6 THR A 24 30.80 -95.75 REMARK 500 8 THR A 24 24.18 -79.07 REMARK 500 10 THR A 24 70.54 72.79 REMARK 500 11 THR A 24 36.33 -94.01 REMARK 500 12 THR A 24 21.88 -72.71 REMARK 500 14 THR A 24 78.55 -167.50 REMARK 500 15 THR A 24 32.77 -94.59 REMARK 500 17 LYS A 22 34.72 -91.56 REMARK 500 17 THR A 24 33.45 -157.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DTC RELATED DB: PDB REMARK 900 SYNTHETHIC ACETYL-DELTA-TOXIN PEPTIDE DISSOLVED IN CD3OH/H2O (2:1) REMARK 900 RELATED ID: 2DTB RELATED DB: PDB REMARK 900 SYNTHETHIC DELTA-TOXIN PEPTIDE DISSOLVED IN CD3OH/H2O (2:1) REMARK 900 RELATED ID: 1DHL RELATED DB: PDB REMARK 900 DELTA-HEMOLYSIN (THEORETICAL MODEL) REMARK 900 RELATED ID: 2DHL RELATED DB: PDB REMARK 900 DELTA-HEMOLYSIN (THEORETICAL MODEL) REMARK 900 RELATED ID: 3DHL RELATED DB: PDB REMARK 900 DELTA-HEMOLYSIN (THEORETICAL MODEL) DBREF 2KAM A 1 26 UNP P0C1V1 HLD_STAAU 1 26 SEQRES 1 A 26 FME ALA GLN ASP ILE ILE SER THR ILE GLY ASP LEU VAL SEQRES 2 A 26 LYS TRP ILE ILE ASP THR VAL ASN LYS PHE THR LYS LYS MODRES 2KAM FME A 1 MET N-FORMYLMETHIONINE HET FME A 1 20 HETNAM FME N-FORMYLMETHIONINE FORMUL 1 FME C6 H11 N O3 S HELIX 1 1 FME A 1 THR A 24 1 24 LINK C FME A 1 N ALA A 2 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 N FME A 1 11.776 13.284 11.565 1.00 1.00 N HETATM 2 CN FME A 1 11.610 13.349 12.884 1.00 1.00 C HETATM 3 O1 FME A 1 12.576 13.612 13.601 1.00 1.00 O HETATM 4 CA FME A 1 12.533 12.202 10.948 1.00 1.00 C HETATM 5 CB FME A 1 11.629 10.982 10.752 1.00 1.00 C HETATM 6 CG FME A 1 10.974 10.600 12.082 1.00 1.00 C HETATM 7 SD FME A 1 10.352 8.903 11.982 1.00 1.00 S HETATM 8 CE FME A 1 9.430 8.910 13.540 1.00 1.00 C HETATM 9 C FME A 1 13.095 12.644 9.603 1.00 1.00 C HETATM 10 O FME A 1 13.272 11.835 8.695 1.00 1.00 O HETATM 11 H1 FME A 1 11.339 13.945 10.994 1.00 1.00 H HETATM 12 HCN FME A 1 10.639 13.169 13.321 1.00 1.00 H HETATM 13 HA FME A 1 13.351 11.933 11.592 1.00 1.00 H HETATM 14 HB2 FME A 1 10.863 11.219 10.028 1.00 1.00 H HETATM 15 HB3 FME A 1 12.218 10.152 10.393 1.00 1.00 H HETATM 16 HG2 FME A 1 11.701 10.670 12.878 1.00 1.00 H HETATM 17 HG3 FME A 1 10.153 11.272 12.285 1.00 1.00 H HETATM 18 HE1 FME A 1 8.790 8.039 13.581 1.00 1.00 H HETATM 19 HE2 FME A 1 8.826 9.801 13.598 1.00 1.00 H HETATM 20 HE3 FME A 1 10.125 8.894 14.368 1.00 1.00 H