HEADER PROTEIN BINDING 24-NOV-08 2KB9 TITLE HUMAN JAGGED-1, EXON 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: JAGGED-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 252-295; COMPND 5 SYNONYM: JAGGED1, HJ1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PROTEIN IS NATURALLY FOUND IN HOMO SAPIENS SOURCE 4 (HUMAN). THE PROTEIN INCLUDES THE C-TERMINAL PART OF THE EGF1 DOMAIN SOURCE 5 AND THE ENTIRE EGF2 DOMAIN. KEYWDS NOTCH SIGNALING, EGF, CALCIUM, DEVELOPMENTAL PROTEIN, DISEASE KEYWDS 2 MUTATION, EGF-LIKE DOMAIN, GLYCOPROTEIN, MEMBRANE, NOTCH SIGNALING KEYWDS 3 PATHWAY, POLYMORPHISM, TRANSMEMBRANE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.PINTAR,C.GUARNACCIA,S.PONGOR REVDAT 2 16-MAR-22 2KB9 1 REMARK REVDAT 1 28-JUL-09 2KB9 0 JRNL AUTH A.PINTAR,C.GUARNACCIA,S.DHIR,S.PONGOR JRNL TITL EXON 6 OF HUMAN JAG1 ENCODES A CONSERVED STRUCTURAL UNIT JRNL REF BMC STRUCT.BIOL. V. 9 43 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19586525 JRNL DOI 10.1186/1472-6807-9-43 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.GUARNACCIA,A.PINTAR,S.PONGOR REMARK 1 TITL EXON 6 OF HUMAN JAGGED-1 ENCODES AN AUTONOMOUSLY FOLDING REMARK 1 TITL 2 UNIT REMARK 1 REF FEBS LETT. V. 574 156 2004 REMARK 1 REFN ISSN 0014-5793 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KB9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000100906. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM PROTEIN, 90% H2O/10% D2O; REMARK 210 0.5 MM PROTEIN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 2 143.09 -174.84 REMARK 500 1 GLN A 3 -42.29 -166.44 REMARK 500 1 TYR A 10 -74.18 -135.89 REMARK 500 1 CYS A 11 89.25 -179.25 REMARK 500 1 ASP A 12 47.14 -162.53 REMARK 500 1 ILE A 15 77.40 51.80 REMARK 500 1 PRO A 18 83.23 -69.76 REMARK 500 1 TRP A 29 69.76 60.97 REMARK 500 1 CYS A 42 72.90 57.33 REMARK 500 2 GLN A 3 -46.76 -141.99 REMARK 500 2 TYR A 10 -63.78 -153.30 REMARK 500 2 CYS A 11 108.60 -174.79 REMARK 500 2 ASP A 12 -36.14 -177.44 REMARK 500 2 ILE A 15 77.55 53.79 REMARK 500 2 PRO A 18 82.63 -69.73 REMARK 500 2 TRP A 29 85.03 63.23 REMARK 500 3 CYS A 2 78.46 56.67 REMARK 500 3 GLN A 3 -43.37 -165.46 REMARK 500 3 TYR A 10 -70.32 -154.00 REMARK 500 3 CYS A 11 117.79 -178.69 REMARK 500 3 ASP A 12 -40.34 -165.54 REMARK 500 3 ILE A 15 77.43 52.33 REMARK 500 3 PRO A 18 83.22 -69.78 REMARK 500 3 TRP A 29 68.88 61.42 REMARK 500 4 CYS A 11 86.65 52.69 REMARK 500 4 ASP A 12 45.47 -143.30 REMARK 500 4 LYS A 13 127.28 -171.94 REMARK 500 4 ILE A 15 77.39 51.78 REMARK 500 4 PRO A 18 82.89 -69.79 REMARK 500 4 TRP A 29 79.63 59.99 REMARK 500 5 GLN A 3 -74.50 -130.52 REMARK 500 5 ILE A 15 77.38 52.25 REMARK 500 5 PRO A 18 83.14 -69.74 REMARK 500 5 TRP A 29 80.65 60.01 REMARK 500 6 CYS A 2 75.46 -116.78 REMARK 500 6 TRP A 6 85.39 -151.61 REMARK 500 6 CYS A 11 88.87 56.60 REMARK 500 6 ASP A 12 26.56 -151.31 REMARK 500 6 ILE A 15 77.51 51.79 REMARK 500 6 PRO A 18 82.59 -69.74 REMARK 500 6 TRP A 29 71.08 61.82 REMARK 500 7 TYR A 4 96.26 -174.96 REMARK 500 7 CYS A 11 69.70 63.07 REMARK 500 7 ILE A 15 77.48 53.24 REMARK 500 7 PRO A 18 82.30 -69.74 REMARK 500 7 CYS A 25 144.06 -170.74 REMARK 500 7 TRP A 29 71.43 63.16 REMARK 500 8 TRP A 6 65.59 -153.19 REMARK 500 8 CYS A 11 72.35 52.08 REMARK 500 8 ILE A 15 77.41 51.66 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VJ2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DSL/EGF1/EGF2/EGF3 DBREF 2KB9 A 1 44 UNP P78504 JAG1_HUMAN 252 295 SEQRES 1 A 44 ARG CYS GLN TYR GLY TRP GLN GLY LEU TYR CYS ASP LYS SEQRES 2 A 44 CYS ILE PRO HIS PRO GLY CYS VAL HIS GLY ILE CYS ASN SEQRES 3 A 44 GLU PRO TRP GLN CYS LEU CYS GLU THR ASN TRP GLY GLY SEQRES 4 A 44 GLN LEU CYS ASP LYS SSBOND 1 CYS A 2 CYS A 11 1555 1555 2.10 SSBOND 2 CYS A 14 CYS A 25 1555 1555 2.00 SSBOND 3 CYS A 20 CYS A 31 1555 1555 2.03 SSBOND 4 CYS A 33 CYS A 42 1555 1555 2.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1