data_2KBD # _entry.id 2KBD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KBD pdb_00002kbd 10.2210/pdb2kbd/pdb RCSB RCSB000236 ? ? WWPDB D_1000000236 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-12-09 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-16 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2KBD _pdbx_database_status.recvd_initial_deposition_date 1998-12-07 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tisne, C.' 1 'Hantz, E.' 2 'Hartmann, B.' 3 'Delepierre, M.' 4 # _citation.id primary _citation.title ;Solution structure of a non-palindromic 16 base-pair DNA related to the HIV-1 kappa B site: evidence for BI-BII equilibrium inducing a global dynamic curvature of the duplex. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 279 _citation.page_first 127 _citation.page_last 142 _citation.year 1998 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9636705 _citation.pdbx_database_id_DOI 10.1006/jmbi.1998.1757 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tisne, C.' 1 ? primary 'Hantz, E.' 2 ? primary 'Hartmann, B.' 3 ? primary 'Delepierre, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)-3') ; 4930.189 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*AP*G)-3') ; 4868.169 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DG)(DG)(DG)(DA)(DC)(DT)(DT)(DT)(DC)(DC)(DA)(DG)(DG)' CTGGGGACTTTCCAGG A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DG)(DG)(DA)(DA)(DA)(DG)(DT)(DC)(DC)(DC)(DC)(DA)(DG)' CCTGGAAAGTCCCCAG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DA n 1 8 DC n 1 9 DT n 1 10 DT n 1 11 DT n 1 12 DC n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DG n 2 1 DC n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DA n 2 8 DA n 2 9 DG n 2 10 DT n 2 11 DC n 2 12 DC n 2 13 DC n 2 14 DC n 2 15 DA n 2 16 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DT 11 11 11 DT T A . n A 1 12 DC 12 12 12 DC C A . n A 1 13 DC 13 13 13 DC C A . n A 1 14 DA 14 14 14 DA A A . n A 1 15 DG 15 15 15 DG G A . n A 1 16 DG 16 16 16 DG G A . n B 2 1 DC 1 17 17 DC C B . n B 2 2 DC 2 18 18 DC C B . n B 2 3 DT 3 19 19 DT T B . n B 2 4 DG 4 20 20 DG G B . n B 2 5 DG 5 21 21 DG G B . n B 2 6 DA 6 22 22 DA A B . n B 2 7 DA 7 23 23 DA A B . n B 2 8 DA 8 24 24 DA A B . n B 2 9 DG 9 25 25 DG G B . n B 2 10 DT 10 26 26 DT T B . n B 2 11 DC 11 27 27 DC C B . n B 2 12 DC 12 28 28 DC C B . n B 2 13 DC 13 29 29 DC C B . n B 2 14 DC 14 30 30 DC C B . n B 2 15 DA 15 31 31 DA A B . n B 2 16 DG 16 32 32 DG G B . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DC 1 ? "O5'" ? A DC 1 "O5'" 2 1 Y 1 B DC 17 ? "O5'" ? B DC 1 "O5'" 3 2 Y 1 A DC 1 ? "O5'" ? A DC 1 "O5'" 4 2 Y 1 B DC 17 ? "O5'" ? B DC 1 "O5'" 5 3 Y 1 A DC 1 ? "O5'" ? A DC 1 "O5'" 6 3 Y 1 B DC 17 ? "O5'" ? B DC 1 "O5'" # _cell.entry_id 2KBD _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KBD _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2KBD _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 2KBD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2KBD _struct.title ;5'-D(*CP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*AP*G)-3' ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KBD _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA STRUCTURE, MODELLING, DEOXYRIBONUCLEIC ACID, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 2KBD 2KBD ? ? ? 2 2 PDB 2KBD 2KBD ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KBD A 1 ? 16 ? 2KBD 1 ? 16 ? 1 16 2 2 2KBD B 1 ? 16 ? 2KBD 17 ? 32 ? 17 32 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 16 N1 ? ? A DC 1 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 16 O6 ? ? A DC 1 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 16 N2 ? ? A DC 1 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 15 N1 ? ? A DT 2 B DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 15 N6 ? ? A DT 2 B DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 3 B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 3 B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 3 B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 13 N3 ? ? A DG 4 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 13 O2 ? ? A DG 4 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 13 N4 ? ? A DG 4 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 5 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 5 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 5 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 6 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 6 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 6 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 7 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 7 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 8 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 8 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 8 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 9 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 9 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 10 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 10 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 11 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 11 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 12 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 12 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 12 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 13 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 13 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 13 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 14 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 14 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 15 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 15 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 15 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 16 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 16 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 16 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.37 108.30 3.07 0.30 N 2 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.06 108.30 2.76 0.30 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.50 108.30 3.20 0.30 N 4 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.34 108.30 3.04 0.30 N 5 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.50 108.30 3.20 0.30 N 6 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.39 108.30 3.09 0.30 N 7 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.58 108.30 3.28 0.30 N 8 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.68 108.30 3.38 0.30 N 9 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.33 108.30 3.03 0.30 N 10 1 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.17 108.30 2.87 0.30 N 11 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.90 108.30 2.60 0.30 N 12 1 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 112.22 108.30 3.92 0.30 N 13 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.62 108.30 3.32 0.30 N 14 1 "O4'" A DA 14 ? ? "C1'" A DA 14 ? ? N9 A DA 14 ? ? 111.22 108.30 2.92 0.30 N 15 1 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.36 108.30 3.06 0.30 N 16 1 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.90 108.30 2.60 0.30 N 17 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 111.35 108.30 3.05 0.30 N 18 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.04 108.30 2.74 0.30 N 19 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 111.59 108.30 3.29 0.30 N 20 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 111.65 108.30 3.35 0.30 N 21 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 111.89 108.30 3.59 0.30 N 22 1 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9 B DA 22 ? ? 110.95 108.30 2.65 0.30 N 23 1 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 111.30 108.30 3.00 0.30 N 24 1 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9 B DA 24 ? ? 111.45 108.30 3.15 0.30 N 25 1 "O4'" B DG 25 ? ? "C1'" B DG 25 ? ? N9 B DG 25 ? ? 111.87 108.30 3.57 0.30 N 26 1 "O4'" B DT 26 ? ? "C1'" B DT 26 ? ? N1 B DT 26 ? ? 111.45 108.30 3.15 0.30 N 27 1 "O4'" B DC 27 ? ? "C1'" B DC 27 ? ? N1 B DC 27 ? ? 111.72 108.30 3.42 0.30 N 28 1 "O4'" B DC 28 ? ? "C1'" B DC 28 ? ? N1 B DC 28 ? ? 111.44 108.30 3.14 0.30 N 29 1 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.36 108.30 3.06 0.30 N 30 1 "O4'" B DC 30 ? ? "C1'" B DC 30 ? ? N1 B DC 30 ? ? 111.17 108.30 2.87 0.30 N 31 1 "O4'" B DA 31 ? ? "C1'" B DA 31 ? ? N9 B DA 31 ? ? 111.15 108.30 2.85 0.30 N 32 1 "O4'" B DG 32 ? ? "C1'" B DG 32 ? ? N9 B DG 32 ? ? 111.48 108.30 3.18 0.30 N 33 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.28 108.30 2.98 0.30 N 34 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.96 108.30 2.66 0.30 N 35 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.32 108.30 3.02 0.30 N 36 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.45 108.30 3.15 0.30 N 37 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.36 108.30 3.06 0.30 N 38 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.35 108.30 3.05 0.30 N 39 2 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.42 108.30 3.12 0.30 N 40 2 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.50 108.30 3.20 0.30 N 41 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.21 108.30 2.91 0.30 N 42 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.06 108.30 2.76 0.30 N 43 2 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.96 108.30 2.66 0.30 N 44 2 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 112.14 108.30 3.84 0.30 N 45 2 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.57 108.30 3.27 0.30 N 46 2 "O4'" A DA 14 ? ? "C1'" A DA 14 ? ? N9 A DA 14 ? ? 111.05 108.30 2.75 0.30 N 47 2 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.35 108.30 3.05 0.30 N 48 2 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.86 108.30 2.56 0.30 N 49 2 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 111.28 108.30 2.98 0.30 N 50 2 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.97 108.30 2.67 0.30 N 51 2 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 111.45 108.30 3.15 0.30 N 52 2 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 111.58 108.30 3.28 0.30 N 53 2 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 111.77 108.30 3.47 0.30 N 54 2 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9 B DA 22 ? ? 110.88 108.30 2.58 0.30 N 55 2 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 111.17 108.30 2.87 0.30 N 56 2 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9 B DA 24 ? ? 111.43 108.30 3.13 0.30 N 57 2 "O4'" B DG 25 ? ? "C1'" B DG 25 ? ? N9 B DG 25 ? ? 111.76 108.30 3.46 0.30 N 58 2 "O4'" B DT 26 ? ? "C1'" B DT 26 ? ? N1 B DT 26 ? ? 111.41 108.30 3.11 0.30 N 59 2 "O4'" B DC 27 ? ? "C1'" B DC 27 ? ? N1 B DC 27 ? ? 111.47 108.30 3.17 0.30 N 60 2 "O4'" B DC 28 ? ? "C1'" B DC 28 ? ? N1 B DC 28 ? ? 111.24 108.30 2.94 0.30 N 61 2 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 111.26 108.30 2.96 0.30 N 62 2 "O4'" B DC 30 ? ? "C1'" B DC 30 ? ? N1 B DC 30 ? ? 111.10 108.30 2.80 0.30 N 63 2 "O4'" B DA 31 ? ? "C1'" B DA 31 ? ? N9 B DA 31 ? ? 111.02 108.30 2.72 0.30 N 64 2 "O4'" B DG 32 ? ? "C1'" B DG 32 ? ? N9 B DG 32 ? ? 111.24 108.30 2.94 0.30 N 65 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.90 108.30 3.60 0.30 N 66 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.80 108.30 2.50 0.30 N 67 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.29 108.30 2.99 0.30 N 68 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.69 108.30 2.39 0.30 N 69 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.52 108.30 3.22 0.30 N 70 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.87 108.30 2.57 0.30 N 71 3 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.45 108.30 3.15 0.30 N 72 3 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.37 108.30 3.07 0.30 N 73 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.97 108.30 2.67 0.30 N 74 3 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.06 108.30 2.76 0.30 N 75 3 "O4'" A DT 11 ? ? "C4'" A DT 11 ? ? "C3'" A DT 11 ? ? 109.70 106.00 3.70 0.60 N 76 3 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.67 108.30 2.37 0.30 N 77 3 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 112.13 108.30 3.83 0.30 N 78 3 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.43 108.30 3.13 0.30 N 79 3 "O4'" A DA 14 ? ? "C1'" A DA 14 ? ? N9 A DA 14 ? ? 110.95 108.30 2.65 0.30 N 80 3 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.56 108.30 3.26 0.30 N 81 3 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.60 108.30 2.30 0.30 N 82 3 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 111.92 108.30 3.62 0.30 N 83 3 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.85 108.30 2.55 0.30 N 84 3 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 111.21 108.30 2.91 0.30 N 85 3 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 111.68 108.30 3.38 0.30 N 86 3 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 111.54 108.30 3.24 0.30 N 87 3 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9 B DA 22 ? ? 110.66 108.30 2.36 0.30 N 88 3 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 110.76 108.30 2.46 0.30 N 89 3 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9 B DA 24 ? ? 111.49 108.30 3.19 0.30 N 90 3 "O4'" B DG 25 ? ? "C1'" B DG 25 ? ? N9 B DG 25 ? ? 111.70 108.30 3.40 0.30 N 91 3 "O4'" B DT 26 ? ? "C1'" B DT 26 ? ? N1 B DT 26 ? ? 111.05 108.30 2.75 0.30 N 92 3 "O4'" B DC 27 ? ? "C1'" B DC 27 ? ? N1 B DC 27 ? ? 112.01 108.30 3.71 0.30 N 93 3 "O4'" B DC 28 ? ? "C1'" B DC 28 ? ? N1 B DC 28 ? ? 110.98 108.30 2.68 0.30 N 94 3 "O4'" B DC 29 ? ? "C1'" B DC 29 ? ? N1 B DC 29 ? ? 110.89 108.30 2.59 0.30 N 95 3 "O4'" B DC 30 ? ? "C1'" B DC 30 ? ? N1 B DC 30 ? ? 110.93 108.30 2.63 0.30 N 96 3 "O4'" B DA 31 ? ? "C1'" B DA 31 ? ? N9 B DA 31 ? ? 110.96 108.30 2.66 0.30 N 97 3 "O4'" B DG 32 ? ? "C1'" B DG 32 ? ? N9 B DG 32 ? ? 111.77 108.30 3.47 0.30 N # _pdbx_nmr_ensemble.entry_id 2KBD _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 3 _pdbx_nmr_ensemble.conformer_selection_criteria ENERGY _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 308.0 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type NOESY _pdbx_nmr_exptl.solution_id 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement IRMA ? 'BOELENS ET AL.' 1 'structure calculation' JUMNA ? ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2KBD 'double helix' 2KBD 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 16 1_555 0.338 -0.044 0.311 -17.277 14.148 -0.675 1 A_DC1:DG32_B A 1 ? B 32 ? 19 1 1 A DT 2 1_555 B DA 15 1_555 -0.095 -0.021 0.089 3.420 0.092 -0.340 2 A_DT2:DA31_B A 2 ? B 31 ? 20 1 1 A DG 3 1_555 B DC 14 1_555 -0.321 -0.072 0.106 9.142 9.560 -1.181 3 A_DG3:DC30_B A 3 ? B 30 ? 19 1 1 A DG 4 1_555 B DC 13 1_555 -0.328 -0.022 0.267 18.491 13.121 -1.138 4 A_DG4:DC29_B A 4 ? B 29 ? 19 1 1 A DG 5 1_555 B DC 12 1_555 -0.433 -0.084 0.146 9.942 10.225 -0.555 5 A_DG5:DC28_B A 5 ? B 28 ? 19 1 1 A DG 6 1_555 B DC 11 1_555 -0.434 -0.092 -0.168 -2.761 5.127 -0.879 6 A_DG6:DC27_B A 6 ? B 27 ? 19 1 1 A DA 7 1_555 B DT 10 1_555 0.142 -0.002 -0.151 -2.497 -0.386 -1.472 7 A_DA7:DT26_B A 7 ? B 26 ? 20 1 1 A DC 8 1_555 B DG 9 1_555 0.431 -0.097 0.116 -3.891 2.668 -1.188 8 A_DC8:DG25_B A 8 ? B 25 ? 19 1 1 A DT 9 1_555 B DA 8 1_555 -0.064 0.023 0.129 -14.372 -5.768 -2.542 9 A_DT9:DA24_B A 9 ? B 24 ? 20 1 1 A DT 10 1_555 B DA 7 1_555 -0.124 0.001 -0.061 -5.575 -10.501 -2.577 10 A_DT10:DA23_B A 10 ? B 23 ? 20 1 1 A DT 11 1_555 B DA 6 1_555 -0.206 0.003 -0.345 1.624 -11.109 -1.615 11 A_DT11:DA22_B A 11 ? B 22 ? 20 1 1 A DC 12 1_555 B DG 5 1_555 0.423 -0.094 -0.277 6.456 -5.921 -0.575 12 A_DC12:DG21_B A 12 ? B 21 ? 19 1 1 A DC 13 1_555 B DG 4 1_555 0.315 -0.055 0.208 -7.669 8.243 -0.114 13 A_DC13:DG20_B A 13 ? B 20 ? 19 1 1 A DA 14 1_555 B DT 3 1_555 0.025 -0.031 0.125 -9.136 1.591 0.517 14 A_DA14:DT19_B A 14 ? B 19 ? 20 1 1 A DG 15 1_555 B DC 2 1_555 -0.192 -0.066 0.580 16.341 -6.448 -2.866 15 A_DG15:DC18_B A 15 ? B 18 ? 19 1 1 A DG 16 1_555 B DC 1 1_555 -0.256 -0.035 0.611 19.281 2.511 -1.923 16 A_DG16:DC17_B A 16 ? B 17 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 16 1_555 A DT 2 1_555 B DA 15 1_555 -0.847 -1.035 3.161 2.315 -17.409 33.112 0.775 1.639 3.229 -28.213 -3.752 37.366 1 AA_DC1DT2:DA31DG32_BB A 1 ? B 32 ? A 2 ? B 31 ? 1 A DT 2 1_555 B DA 15 1_555 A DG 3 1_555 B DC 14 1_555 0.441 1.999 4.708 0.835 -51.026 42.866 4.450 -0.364 1.699 -52.558 -0.860 65.709 2 AA_DT2DG3:DC30DA31_BB A 2 ? B 31 ? A 3 ? B 30 ? 1 A DG 3 1_555 B DC 14 1_555 A DG 4 1_555 B DC 13 1_555 0.583 -0.510 3.529 -0.804 -16.463 37.179 1.314 -0.941 3.435 -24.406 1.192 40.551 3 AA_DG3DG4:DC29DC30_BB A 3 ? B 30 ? A 4 ? B 29 ? 1 A DG 4 1_555 B DC 13 1_555 A DG 5 1_555 B DC 12 1_555 0.740 -1.775 4.316 1.667 -25.592 33.410 1.597 -0.770 4.552 -38.293 -2.494 41.895 4 AA_DG4DG5:DC28DC29_BB A 4 ? B 29 ? A 5 ? B 28 ? 1 A DG 5 1_555 B DC 12 1_555 A DG 6 1_555 B DC 11 1_555 0.170 -1.623 4.139 5.426 -16.265 35.799 0.238 0.628 4.425 -24.785 -8.268 39.572 5 AA_DG5DG6:DC27DC28_BB A 5 ? B 28 ? A 6 ? B 27 ? 1 A DG 6 1_555 B DC 11 1_555 A DA 7 1_555 B DT 10 1_555 0.019 -1.154 3.382 3.246 -4.037 36.605 -1.247 0.431 3.474 -6.388 -5.136 36.957 6 AA_DG6DA7:DT26DC27_BB A 6 ? B 27 ? A 7 ? B 26 ? 1 A DA 7 1_555 B DT 10 1_555 A DC 8 1_555 B DG 9 1_555 0.009 -1.285 3.499 -3.429 -5.225 36.100 -1.257 -0.531 3.628 -8.354 5.482 36.620 7 AA_DA7DC8:DG25DT26_BB A 7 ? B 26 ? A 8 ? B 25 ? 1 A DC 8 1_555 B DG 9 1_555 A DT 9 1_555 B DA 8 1_555 -0.657 -1.736 3.789 0.536 -7.771 32.141 -1.448 1.267 4.075 -13.785 -0.952 33.047 8 AA_DC8DT9:DA24DG25_BB A 8 ? B 25 ? A 9 ? B 24 ? 1 A DT 9 1_555 B DA 8 1_555 A DT 10 1_555 B DA 7 1_555 -0.323 -0.480 3.100 1.140 -8.262 37.941 0.249 0.621 3.122 -12.522 -1.728 38.814 9 AA_DT9DT10:DA23DA24_BB A 9 ? B 24 ? A 10 ? B 23 ? 1 A DT 10 1_555 B DA 7 1_555 A DT 11 1_555 B DA 6 1_555 -0.057 -0.248 3.063 1.297 -5.026 37.416 0.228 0.246 3.066 -7.789 -2.010 37.761 10 AA_DT10DT11:DA22DA23_BB A 10 ? B 23 ? A 11 ? B 22 ? 1 A DT 11 1_555 B DA 6 1_555 A DC 12 1_555 B DG 5 1_555 1.233 -0.286 3.162 0.341 1.026 38.584 -0.555 -1.824 3.164 1.552 -0.515 38.598 11 AA_DT11DC12:DG21DA22_BB A 11 ? B 22 ? A 12 ? B 21 ? 1 A DC 12 1_555 B DG 5 1_555 A DC 13 1_555 B DG 4 1_555 -0.301 -1.855 3.798 -6.445 -1.052 32.016 -3.084 -0.784 3.842 -1.883 11.535 32.658 12 AA_DC12DC13:DG20DG21_BB A 12 ? B 21 ? A 13 ? B 20 ? 1 A DC 13 1_555 B DG 4 1_555 A DA 14 1_555 B DT 3 1_555 -0.719 1.324 5.010 -0.620 -53.600 42.914 4.175 0.612 2.300 -54.088 0.626 67.657 13 AA_DC13DA14:DT19DG20_BB A 13 ? B 20 ? A 14 ? B 19 ? 1 A DA 14 1_555 B DT 3 1_555 A DG 15 1_555 B DC 2 1_555 -0.618 -0.128 2.980 -0.304 -13.101 34.227 1.460 0.946 2.844 -21.317 0.495 36.580 14 AA_DA14DG15:DC18DT19_BB A 14 ? B 19 ? A 15 ? B 18 ? 1 A DG 15 1_555 B DC 2 1_555 A DG 16 1_555 B DC 1 1_555 0.678 -0.340 3.558 -2.115 -17.286 42.640 1.223 -1.073 3.409 -22.674 2.775 45.906 15 AA_DG15DG16:DC17DC18_BB A 15 ? B 18 ? A 16 ? B 17 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model UNITY _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 2KBD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_