HEADER ISOMERASE 19-DEC-08 2KCF TITLE THE NMR SOLUTION STRUCTURE OF THE ISOLATED APO PIN1 WW DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ROTAMASE PIN1, PPIASE PIN1; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: PIN1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS ISOMERASE, PEPTIDYLPROLYL ISOMERASE, PIN1, WW DOMAIN, CELL CYCLE, KEYWDS 2 NUCLEUS, PHOSPHOPROTEIN, ROTAMASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.A.KOWALSKI,K.LIU,J.W.KELLY REVDAT 3 22-MAY-24 2KCF 1 REMARK REVDAT 2 16-MAR-22 2KCF 1 REMARK SEQADV REVDAT 1 13-JAN-09 2KCF 0 JRNL AUTH J.A.KOWALSKI,K.LIU,J.W.KELLY JRNL TITL NMR SOLUTION STRUCTURE OF THE ISOLATED APO PIN1 WW DOMAIN: JRNL TITL 2 COMPARISON TO THE X-RAY CRYSTAL STRUCTURES OF PIN1 JRNL REF BIOPOLYMERS V. 63 111 2002 JRNL REFN ISSN 0006-3525 JRNL PMID 11786999 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROSA, AMBER OPAL REMARK 3 AUTHORS : GUNTERT (PROSA), CASE, DARDEN, CHEATHAM, III, REMARK 3 SIMMERLING, WANG, DUKE, LUO, ... AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000100946. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : MM PIN1, 50 MM POTASSIUM REMARK 210 PHOSPHATE-2, 0.02% V/V SODIUM REMARK 210 AZIDE-3, TRACE % DSS-4, 90% H2O/ REMARK 210 10% D2O; MM PIN1, 50 MM REMARK 210 POTASSIUM PHOSPHATE-6, 0.02% V/V REMARK 210 SODIUM AZIDE-7, TRACE % DSS-8, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AMX; DMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, GARANT, DYANA REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 18 ARG A 11 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 18 TYR A 21 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 -34.76 66.46 REMARK 500 1 LYS A 10 76.28 -110.81 REMARK 500 1 SER A 13 -144.21 -76.08 REMARK 500 1 SER A 15 -96.76 -166.11 REMARK 500 1 VAL A 19 58.09 -91.16 REMARK 500 1 SER A 35 81.95 -161.29 REMARK 500 2 LYS A 3 160.55 71.98 REMARK 500 2 LEU A 4 105.07 57.28 REMARK 500 2 ARG A 14 -144.74 -80.02 REMARK 500 2 SER A 15 -111.35 53.61 REMARK 500 2 ASN A 27 74.63 46.52 REMARK 500 2 PRO A 34 -85.81 -71.03 REMARK 500 2 SER A 35 61.49 36.57 REMARK 500 3 SER A 16 -76.70 -156.67 REMARK 500 3 ILE A 25 -76.75 -80.01 REMARK 500 3 ASN A 27 12.48 58.33 REMARK 500 3 SER A 35 3.78 -161.31 REMARK 500 4 SER A 15 -76.70 63.25 REMARK 500 4 VAL A 19 67.04 -102.56 REMARK 500 4 TRP A 31 -36.50 -132.45 REMARK 500 5 LYS A 3 -51.63 -129.46 REMARK 500 5 SER A 16 -25.07 -150.83 REMARK 500 5 VAL A 19 59.99 -116.24 REMARK 500 5 ILE A 25 -52.31 -131.86 REMARK 500 5 ASN A 27 -2.63 55.93 REMARK 500 5 GLN A 30 -176.94 -175.15 REMARK 500 5 SER A 35 -47.03 -140.96 REMARK 500 6 SER A 2 88.91 58.02 REMARK 500 6 LYS A 3 -133.15 50.95 REMARK 500 6 ARG A 14 73.05 40.60 REMARK 500 6 SER A 15 -99.86 56.57 REMARK 500 6 VAL A 19 63.77 -110.39 REMARK 500 6 ASN A 27 86.15 53.26 REMARK 500 7 SER A 2 -90.69 -154.63 REMARK 500 7 LYS A 3 -71.00 -25.80 REMARK 500 7 ARG A 14 87.06 47.16 REMARK 500 7 SER A 15 -155.59 56.25 REMARK 500 7 SER A 16 73.49 -66.88 REMARK 500 7 ASN A 27 92.53 52.00 REMARK 500 7 GLN A 30 -142.79 -152.95 REMARK 500 7 TRP A 31 -45.58 -139.62 REMARK 500 7 GLU A 32 -163.89 -77.31 REMARK 500 7 SER A 35 66.31 -153.83 REMARK 500 8 LYS A 3 -160.81 54.34 REMARK 500 8 SER A 16 -9.43 40.61 REMARK 500 8 VAL A 19 59.85 -104.59 REMARK 500 8 SER A 35 116.12 -168.91 REMARK 500 9 LYS A 10 -160.79 52.90 REMARK 500 9 ARG A 14 65.92 28.13 REMARK 500 9 SER A 15 80.46 46.84 REMARK 500 REMARK 500 THIS ENTRY HAS 141 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 20 0.07 SIDE CHAIN REMARK 500 2 TYR A 20 0.09 SIDE CHAIN REMARK 500 4 TYR A 20 0.07 SIDE CHAIN REMARK 500 9 ARG A 11 0.10 SIDE CHAIN REMARK 500 11 TYR A 20 0.09 SIDE CHAIN REMARK 500 12 TYR A 20 0.07 SIDE CHAIN REMARK 500 12 ARG A 33 0.08 SIDE CHAIN REMARK 500 13 ARG A 18 0.08 SIDE CHAIN REMARK 500 13 TYR A 20 0.07 SIDE CHAIN REMARK 500 14 ARG A 11 0.12 SIDE CHAIN REMARK 500 14 TYR A 20 0.08 SIDE CHAIN REMARK 500 15 ARG A 14 0.10 SIDE CHAIN REMARK 500 15 TYR A 20 0.11 SIDE CHAIN REMARK 500 16 ARG A 11 0.08 SIDE CHAIN REMARK 500 16 TYR A 20 0.07 SIDE CHAIN REMARK 500 17 TYR A 20 0.10 SIDE CHAIN REMARK 500 18 ARG A 14 0.09 SIDE CHAIN REMARK 500 18 TYR A 20 0.10 SIDE CHAIN REMARK 500 18 TYR A 21 0.08 SIDE CHAIN REMARK 500 20 TYR A 20 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KBU RELATED DB: PDB REMARK 900 VARIANT OF PIN1 WW DOMAIN WITH BETA TURN MIMIC REMARK 900 RELATED ID: 16088 RELATED DB: BMRB DBREF 2KCF A 3 36 UNP Q13526 PIN1_HUMAN 6 39 SEQADV 2KCF GLY A 1 UNP Q13526 EXPRESSION TAG SEQADV 2KCF SER A 2 UNP Q13526 EXPRESSION TAG SEQRES 1 A 36 GLY SER LYS LEU PRO PRO GLY TRP GLU LYS ARG MET SER SEQRES 2 A 36 ARG SER SER GLY ARG VAL TYR TYR PHE ASN HIS ILE THR SEQRES 3 A 36 ASN ALA SER GLN TRP GLU ARG PRO SER GLY SHEET 1 A 3 TRP A 8 LYS A 10 0 SHEET 2 A 3 TYR A 21 ASN A 23 -1 O PHE A 22 N GLU A 9 SHEET 3 A 3 SER A 29 GLN A 30 -1 O GLN A 30 N TYR A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1