HEADER NUCLEIC ACID BINDING PROTEIN 23-DEC-08 2KCM TITLE SOLUTION NMR STRUCTURE OF THE N-TERMINAL OB-DOMAIN OF SO_1732 FROM TITLE 2 SHEWANELLA ONEIDENSIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET SOR210A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLD SHOCK DOMAIN FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-66; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_1732; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21-23C KEYWDS NUCLEIC ACID BINDING PROTEIN, BETA BARREL, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,M.MAGLAQUI,M.JIANG,C.CICCOSANTI,R.XIAO,J.LUI,J.K.EVERETT, AUTHOR 2 G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 01-MAY-24 2KCM 1 REMARK SEQADV REVDAT 2 13-JUL-11 2KCM 1 VERSN REVDAT 1 10-FEB-09 2KCM 0 JRNL AUTH M.A.KENNEDY,T.A.RAMELOT,K.DING,M.MAGLAQUI,M.JIANG, JRNL AUTH 2 C.CICCOSANTI,R.XIAO,J.LUI,J.K.EVERETT,G.SWAPNA,T.B.ACTON, JRNL AUTH 3 B.ROST,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF THE N-TERMINAL OB-DOMAIN OF JRNL TITL 2 SO_1732 FROM SHEWANELLA ONEIDENSIS. NORTHEAST STRUCTURAL JRNL TITL 3 GENOMICS CONSORTIUM TARGET SOR210A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CNS 1.2, X-PLOR NIH 2.2.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTOSTRUCTURE AND CYANA WERE USED TO REMARK 3 AUTOMATICALLY ASSIGN NOE CROSSPEAKS. XPLOR-NIH AND CNS WERE USED REMARK 3 TO PERFORM HYDROGEN BOND REFINEMENT AND REFINEMENT IN THE REMARK 3 PRESENCE OF WATER. REMARK 4 REMARK 4 2KCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000100953. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.84 MM [U-100% 13C; U-100% 15N] REMARK 210 OB DOMAIN-1, 20 MM MES-2, 100 MM REMARK 210 SODIUM CHLORIDE-3, 10 MM DTT-4, REMARK 210 5 MM CALCIUM CHLORIDE-5, 0.02 % REMARK 210 SODIUM AZIDE-6, 95% H2O/5% D2O; REMARK 210 .85 MM [U-5% 13C; U-99% 15N] OB REMARK 210 DOMAIN-7, 20 MM MES-8, 100 MM REMARK 210 SODIUM CHLORIDE-9, 10 MM DTT-10, REMARK 210 5 MM CALCIUM CHLORIDE-11, 0.02 % REMARK 210 SODIUM AZIDE-12, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 2D 1H- REMARK 210 15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.113, AUTOASSIGN 2.3.0, REMARK 210 AUTOSTRUCTURE 2.2.1, CYANA 2.1, REMARK 210 PSVS 1.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 13 27.35 34.95 REMARK 500 1 ASP A 37 -9.46 -51.10 REMARK 500 1 PRO A 53 -71.52 -73.09 REMARK 500 1 THR A 54 149.29 58.38 REMARK 500 2 LYS A 2 -164.22 -168.20 REMARK 500 2 LYS A 13 15.73 47.08 REMARK 500 2 THR A 54 145.27 -178.01 REMARK 500 2 LYS A 56 131.72 -173.24 REMARK 500 2 LEU A 58 146.15 59.18 REMARK 500 2 GLU A 68 -151.17 -72.35 REMARK 500 2 HIS A 69 73.43 59.15 REMARK 500 2 HIS A 70 76.21 -164.12 REMARK 500 2 HIS A 72 119.14 -166.10 REMARK 500 3 TYR A 8 102.08 -162.76 REMARK 500 3 LEU A 27 96.77 70.40 REMARK 500 3 THR A 52 88.54 -154.17 REMARK 500 3 ALA A 62 71.09 57.33 REMARK 500 3 GLU A 68 166.62 54.49 REMARK 500 4 LYS A 13 4.52 56.29 REMARK 500 4 THR A 54 99.43 -35.37 REMARK 500 4 LEU A 58 128.38 58.40 REMARK 500 4 ALA A 62 74.75 51.56 REMARK 500 4 HIS A 71 -36.65 -153.29 REMARK 500 5 LYS A 13 -17.65 69.33 REMARK 500 5 LYS A 35 -6.64 -54.91 REMARK 500 5 LEU A 41 -168.95 -55.14 REMARK 500 5 LEU A 58 145.61 60.56 REMARK 500 5 GLU A 68 87.40 59.17 REMARK 500 5 HIS A 70 108.22 55.18 REMARK 500 6 LYS A 13 -8.46 65.61 REMARK 500 6 PRO A 66 41.09 -73.43 REMARK 500 6 HIS A 72 179.53 48.94 REMARK 500 6 HIS A 73 83.61 44.43 REMARK 500 7 LYS A 13 30.97 35.06 REMARK 500 7 THR A 52 88.76 -154.29 REMARK 500 7 THR A 54 157.18 52.55 REMARK 500 7 ALA A 60 -83.04 -99.87 REMARK 500 7 LYS A 61 144.79 60.31 REMARK 500 7 GLU A 68 10.38 -144.56 REMARK 500 8 TYR A 8 117.63 -161.06 REMARK 500 8 LYS A 35 -7.27 -52.23 REMARK 500 8 THR A 52 87.96 -150.52 REMARK 500 8 GLU A 68 -161.02 -105.21 REMARK 500 8 HIS A 72 -89.30 42.64 REMARK 500 9 LYS A 13 -7.00 61.47 REMARK 500 9 THR A 54 99.55 -35.65 REMARK 500 9 LEU A 58 146.30 58.81 REMARK 500 9 HIS A 70 -129.70 -147.46 REMARK 500 9 HIS A 71 79.88 50.11 REMARK 500 10 TYR A 8 -74.65 -160.28 REMARK 500 REMARK 500 THIS ENTRY HAS 124 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16086 RELATED DB: BMRB REMARK 900 RELATED ID: SOR210A RELATED DB: TARGETDB DBREF 2KCM A 1 66 UNP Q8EG75 Q8EG75_SHEON 1 66 SEQADV 2KCM LEU A 67 UNP Q8EG75 EXPRESSION TAG SEQADV 2KCM GLU A 68 UNP Q8EG75 EXPRESSION TAG SEQADV 2KCM HIS A 69 UNP Q8EG75 EXPRESSION TAG SEQADV 2KCM HIS A 70 UNP Q8EG75 EXPRESSION TAG SEQADV 2KCM HIS A 71 UNP Q8EG75 EXPRESSION TAG SEQADV 2KCM HIS A 72 UNP Q8EG75 EXPRESSION TAG SEQADV 2KCM HIS A 73 UNP Q8EG75 EXPRESSION TAG SEQADV 2KCM HIS A 74 UNP Q8EG75 EXPRESSION TAG SEQRES 1 A 74 MET LYS GLY LYS VAL VAL SER TYR LEU ALA ALA LYS LYS SEQRES 2 A 74 TYR GLY PHE ILE GLN GLY ASP ASP GLY GLU SER TYR PHE SEQRES 3 A 74 LEU HIS PHE SER GLU LEU LEU ASP LYS LYS ASP GLU GLY SEQRES 4 A 74 LYS LEU VAL LYS GLY SER MET VAL HIS PHE ASP PRO THR SEQRES 5 A 74 PRO THR PRO LYS GLY LEU ALA ALA LYS ALA ILE SER LEU SEQRES 6 A 74 PRO LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 HIS A 28 LEU A 32 5 5 HELIX 2 2 LYS A 35 GLY A 39 5 5 SHEET 1 A 5 SER A 24 TYR A 25 0 SHEET 2 A 5 TYR A 14 GLY A 19 -1 N ILE A 17 O TYR A 25 SHEET 3 A 5 LYS A 2 LEU A 9 -1 N SER A 7 O PHE A 16 SHEET 4 A 5 MET A 46 THR A 52 -1 O VAL A 47 N GLY A 3 SHEET 5 A 5 ALA A 59 SER A 64 -1 O SER A 64 N HIS A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1