HEADER RIBOSOMAL PROTEIN 23-DEC-08 2KCO TITLE SOLUTION NMR STRUCTURE OF RIBOSOMAL PROTEIN SSO0164 FROM SULFOLOBUS TITLE 2 SOLFATARICUS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET TITLE 3 SST4. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S8E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: DSM 1617 / JCM 11322 / P2; SOURCE 5 ATCC: 35092; SOURCE 6 GENE: RPS8E, SSO0164; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS RIBOSOMAL PROTEIN OF UNKNOWN FUNCTION, RIBONUCLEOPROTEIN, RIBOSOMAL KEYWDS 2 PROTEIN, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,A.GUTMANAS,A.YEE,C.FARES,M.GARCIA,G.T.MONTELIONE, AUTHOR 2 C.H.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 2 19-FEB-20 2KCO 1 REMARK REVDAT 1 13-JAN-09 2KCO 0 JRNL AUTH A.LEMAK,A.GUTMANAS,A.YEE,C.FARES,M.GARCIA,G.T.MONTELIONE, JRNL AUTH 2 C.H.ARROWSMITH JRNL TITL SOLUTION NMR STRUCTURE OF RIBOSOMAL PROTEIN SSO0164 FROM JRNL TITL 2 SULFOLOBUS SOLFATARICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KCO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000100955. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.7 REMARK 210 IONIC STRENGTH : 500 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] SSO0164-1, REMARK 210 10 MM TRIS-2, 500 MM SODIUM REMARK 210 CHLORIDE-3, 10 UM ZNSO4-4, 10 MM REMARK 210 DTT-5, 0.01 % NAN3-6, 10 MM REMARK 210 BENZAMIDINE-7, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY; 3D REMARK 210 1H-13C_AROM NOESY; 2D 1H-15N REMARK 210 HSQC(IPAP) REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, FMC, TALOS REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS IN REMARK 210 WATER BATH REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE NMR DATA SUGGEST THAT RESIDUES 1-60 DO NOT FORM A REMARK 210 GLOBULAR DOMAIN, ALTHOUGH RESIDUES 38-48 DOES FORM AN ISOLATED REMARK 210 HELIX. THIS N-TERMINAL REGION IS LIKELY TO BE VERY FLEXIBLE AND REMARK 210 THE EXTENDED STRUCTURES PRESENTED HERE DO NOT NECESSARILY REMARK 210 REPRESENT A DEFINED CONFORMATION FOR THIS REGION (OTHER THAN THE REMARK 210 HELIX). THERE DO NOT APPEAR TO BE ANY INTERACTIONS BETWEEN REMARK 210 RESIDUES 1-60 AND THE C-TERMINAL GLOBULAR PART OF THE PROTEIN. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 7 96.85 -65.93 REMARK 500 1 LYS A 23 -166.94 -120.53 REMARK 500 1 LYS A 25 -77.81 -103.35 REMARK 500 1 TYR A 26 37.93 -166.29 REMARK 500 1 THR A 36 -96.83 -82.86 REMARK 500 1 LEU A 37 -173.94 -170.68 REMARK 500 1 SER A 38 20.25 -140.04 REMARK 500 1 LEU A 79 -79.84 -84.97 REMARK 500 1 ASN A 87 48.43 -102.35 REMARK 500 1 ALA A 106 -73.80 -72.54 REMARK 500 2 LEU A 16 75.83 -153.59 REMARK 500 2 PRO A 31 105.90 -53.44 REMARK 500 2 LEU A 79 -69.82 -93.80 REMARK 500 3 LYS A 17 115.66 -162.02 REMARK 500 3 PRO A 32 -165.31 -67.01 REMARK 500 3 LEU A 79 -75.82 -89.43 REMARK 500 3 ASN A 87 54.86 -95.60 REMARK 500 3 LYS A 127 85.71 -66.74 REMARK 500 3 ARG A 132 99.12 -166.64 REMARK 500 4 THR A 36 -72.40 -92.05 REMARK 500 4 LYS A 54 101.93 60.04 REMARK 500 4 LYS A 58 -61.95 -93.56 REMARK 500 4 LEU A 79 -82.16 -97.94 REMARK 500 4 ASN A 87 50.21 -97.06 REMARK 500 4 ALA A 106 -71.46 -74.99 REMARK 500 5 GLN A 5 -21.65 79.45 REMARK 500 5 THR A 36 -92.60 -71.45 REMARK 500 5 LEU A 79 -73.92 -88.29 REMARK 500 5 ASN A 87 57.99 -93.25 REMARK 500 5 ARG A 132 81.40 -159.14 REMARK 500 6 ARG A 21 -70.44 -77.22 REMARK 500 6 TYR A 26 51.54 -147.26 REMARK 500 6 THR A 33 96.05 -66.15 REMARK 500 6 LEU A 37 -173.39 -67.59 REMARK 500 6 LEU A 79 -74.92 -87.91 REMARK 500 6 ASN A 87 43.12 -97.52 REMARK 500 6 LYS A 127 89.59 -60.86 REMARK 500 7 PRO A 7 109.31 -50.10 REMARK 500 7 PRO A 32 84.28 -67.79 REMARK 500 7 PHE A 34 94.40 -67.27 REMARK 500 7 LEU A 79 -82.45 -94.02 REMARK 500 7 ASN A 87 57.64 -98.12 REMARK 500 7 SER A 130 87.97 -65.17 REMARK 500 8 ASP A 22 132.71 67.64 REMARK 500 8 TYR A 59 98.33 -65.51 REMARK 500 8 THR A 61 94.79 -67.85 REMARK 500 8 LEU A 79 -85.52 -99.09 REMARK 500 8 ALA A 106 -70.18 -79.38 REMARK 500 8 LEU A 126 44.26 -91.92 REMARK 500 9 LEU A 16 85.30 -173.29 REMARK 500 REMARK 500 THIS ENTRY HAS 119 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 65 LEU A 66 1 148.30 REMARK 500 VAL A 65 LEU A 66 2 147.94 REMARK 500 VAL A 65 LEU A 66 3 148.66 REMARK 500 VAL A 65 LEU A 66 4 147.65 REMARK 500 VAL A 65 LEU A 66 5 144.54 REMARK 500 VAL A 65 LEU A 66 6 147.00 REMARK 500 VAL A 65 LEU A 66 7 145.63 REMARK 500 VAL A 65 LEU A 66 9 145.54 REMARK 500 VAL A 65 LEU A 66 10 147.74 REMARK 500 VAL A 65 LEU A 66 11 145.42 REMARK 500 VAL A 65 LEU A 66 12 143.92 REMARK 500 VAL A 65 LEU A 66 13 145.04 REMARK 500 VAL A 65 LEU A 66 14 148.71 REMARK 500 VAL A 65 LEU A 66 15 147.06 REMARK 500 VAL A 65 LEU A 66 19 146.60 REMARK 500 VAL A 65 LEU A 66 20 144.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16089 RELATED DB: BMRB REMARK 900 RELATED ID: SST4 RELATED DB: TARGETDB DBREF 2KCO A 1 133 UNP Q980W3 RS8E_SULSO 1 133 SEQRES 1 A 133 MET GLY PHE TYR GLN GLY PRO ASP ASN ARG LYS ILE THR SEQRES 2 A 133 GLY GLY LEU LYS GLY LYS HIS ARG ASP LYS ARG LYS TYR SEQRES 3 A 133 GLU ILE GLY ASN PRO PRO THR PHE THR THR LEU SER ALA SEQRES 4 A 133 GLU ASP ILE ARG ILE LYS ASP ARG THR LEU GLY GLY ASN SEQRES 5 A 133 PHE LYS VAL ARG LEU LYS TYR THR THR THR ALA ASN VAL SEQRES 6 A 133 LEU ASP PRO ALA THR ASN THR ALA LYS LYS VAL LYS ILE SEQRES 7 A 133 LEU GLU ILE LEU GLU THR PRO ALA ASN LYS GLU LEU ALA SEQRES 8 A 133 ARG ARG GLY ILE ILE ILE ARG GLY ALA LYS ILE ARG THR SEQRES 9 A 133 GLU ALA GLY LEU ALA VAL VAL THR SER ARG PRO GLY GLN SEQRES 10 A 133 ASP GLY VAL ILE ASN ALA VAL LEU LEU LYS ASN GLU SER SEQRES 11 A 133 GLN ARG SER HELIX 1 1 SER A 38 THR A 48 1 11 HELIX 2 2 ASN A 87 ARG A 92 1 6 SHEET 1 A 6 THR A 62 ASP A 67 0 SHEET 2 A 6 THR A 72 ILE A 81 -1 O VAL A 76 N ALA A 63 SHEET 3 A 6 LYS A 101 THR A 104 -1 O ARG A 103 N LEU A 79 SHEET 4 A 6 LEU A 108 PRO A 115 -1 O ALA A 109 N ILE A 102 SHEET 5 A 6 ILE A 121 LEU A 125 -1 O VAL A 124 N VAL A 110 SHEET 6 A 6 THR A 62 ASP A 67 1 N LEU A 66 O ALA A 123 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1